Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.50697 * 109.47030 * 60.00195 * 15 13 12 17 17 O 1.20823 * 119.99861 * 120.00040 * 16 15 13 18 18 O 1.34224 * 120.00079 * 299.99902 * 16 15 13 19 19 C 1.53000 * 109.47208 * 300.00162 * 15 13 12 20 20 C 1.53005 * 109.47170 * 300.00110 * 19 15 13 21 21 C 1.53008 * 109.46872 * 300.00057 * 20 19 15 22 22 C 1.53000 * 109.47269 * 60.00004 * 21 20 19 23 23 C 1.52998 * 109.47052 * 180.02562 * 15 13 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 0.96701 * 117.00275 * 180.02562 * 18 16 15 30 30 H 1.09002 * 109.47125 * 59.99974 * 19 15 13 31 31 H 1.08992 * 109.47138 * 180.02562 * 19 15 13 32 32 H 1.08994 * 109.47419 * 179.97438 * 20 19 15 33 33 H 1.08998 * 109.46860 * 59.99440 * 20 19 15 34 34 H 1.08998 * 109.46656 * 299.99881 * 21 20 19 35 35 H 1.09006 * 109.46635 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.46957 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47284 * 59.99565 * 22 21 20 38 38 H 1.09001 * 109.47307 * 179.97438 * 23 15 13 39 39 H 1.09005 * 109.47365 * 300.00129 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 1.7185 -1.8651 -3.9262 17 8 1.1546 -1.8863 -4.9946 18 8 1.5163 -2.8535 -3.0409 19 6 4.0513 -1.2800 -3.3223 20 6 4.9959 -0.1265 -2.9786 21 6 5.0475 0.8567 -4.1498 22 6 3.6450 1.4077 -4.4153 23 6 2.7010 0.2543 -4.7588 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 2.2490 -1.6318 -1.1526 29 1 0.9111 -3.5607 -3.3030 30 1 4.0145 -1.9804 -2.4879 31 1 4.4144 -1.7935 -4.2124 32 1 5.9948 -0.5190 -2.7890 33 1 4.6329 0.3875 -2.0886 34 1 5.4104 0.3427 -5.0398 35 1 5.7201 1.6787 -3.9048 36 1 3.6819 2.1084 -5.2494 37 1 3.2820 1.9216 -3.5252 38 1 3.0644 -0.2595 -5.6488 39 1 1.7021 0.6473 -4.9481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603118461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = -143.834973 kcal Electronic energy + Delta-G solvation = -22291.393066 eV Core-core repulsion = 19005.307661 eV Total energy + Delta-G solvation = -3286.085405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24482 -39.24029 -37.16285 -36.14171 -35.02502 -32.63967 -31.65734 -30.70671 -29.49850 -25.26308 -24.72324 -22.84411 -22.53057 -21.01993 -20.17213 -19.20183 -18.16113 -17.28142 -16.69043 -16.14039 -15.63892 -15.27067 -14.79430 -14.43121 -14.04316 -13.94297 -13.60394 -13.18437 -12.96921 -12.69098 -12.42921 -12.24267 -12.17868 -12.06798 -11.72973 -11.58192 -11.36852 -11.00938 -10.88664 -10.82621 -10.51990 -10.22537 -10.19058 -10.11499 -9.71263 -9.25899 -9.07753 -8.77268 -8.18619 -6.22819 -4.25341 2.04108 2.68955 3.21600 3.32500 3.34067 3.37842 3.77930 4.29612 4.40264 4.64835 4.89921 5.07997 5.11907 5.18640 5.27958 5.37414 5.46068 5.51283 5.63464 5.80952 5.90399 6.03482 6.14243 6.24782 6.28118 6.31101 6.32825 6.33362 6.43743 6.52633 6.66550 6.81777 7.16195 7.24487 7.47571 7.80648 8.09617 8.48062 8.71840 8.84386 9.37743 10.89253 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.006536 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.841556 B = 4282.843205 C = 4605.198920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.688 5.688 13 C 0.518 3.482 14 O -0.537 6.537 15 C -0.071 4.071 16 C 0.494 3.506 17 O -0.509 6.509 18 O -0.506 6.506 19 C -0.103 4.103 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.079 4.079 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.267 0.733 28 H 0.401 0.599 29 H 0.412 0.588 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -1.801 -14.323 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.336 5.336 13 C 0.301 3.699 14 O -0.415 6.415 15 C -0.075 4.075 16 C 0.335 3.665 17 O -0.397 6.397 18 O -0.318 6.318 19 C -0.141 4.141 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.171 4.171 23 C -0.117 4.117 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.237 0.763 29 H 0.272 0.728 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.245 -0.671 -14.286 14.665 hybrid contribution -1.013 -0.349 0.106 1.077 sum 2.232 -1.020 -14.180 14.391 Atomic orbital electron populations 1.22459 0.99310 1.00930 0.99296 1.19146 0.90145 0.94670 0.82717 0.93258 1.21015 1.33296 1.14435 0.88398 0.90076 1.24819 0.95467 0.96659 0.95532 1.69867 1.44865 1.40052 0.98038 0.86896 0.80571 0.83666 0.77467 1.20358 1.22133 1.18663 1.46250 1.63890 1.14225 1.09280 1.19653 0.78867 0.87329 0.84030 1.90605 1.50770 1.15528 1.84645 1.20988 0.95527 0.92673 0.98338 1.23034 0.79906 0.82079 0.81466 1.90697 1.47322 1.76905 1.24751 1.84527 1.64333 1.34770 1.48195 1.21586 0.90640 0.98826 1.03032 1.21579 0.99191 0.95915 0.99344 1.21571 0.97426 0.98722 0.97961 1.21826 0.94084 0.97300 1.03889 1.21219 1.01686 0.94791 0.93977 0.94653 0.93375 0.92744 0.92280 0.76343 0.72838 0.89828 0.90631 0.91041 0.90793 0.92333 0.91812 0.91892 0.88369 0.91076 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.24 5.52 2.15 -69.08 -0.15 5.37 16 3 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 4 C -0.53 -14.10 9.31 -34.44 -0.32 -14.42 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 8 Si 0.88 21.48 24.37 -169.99 -4.14 17.34 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.69 -13.41 4.73 -54.93 -0.26 -13.67 16 13 C 0.52 9.55 4.92 -10.98 -0.05 9.49 16 14 O -0.54 -11.40 13.32 5.56 0.07 -11.32 16 15 C -0.07 -1.03 0.57 -156.82 -0.09 -1.12 16 16 C 0.49 7.05 6.91 36.00 0.25 7.30 16 17 O -0.51 -8.22 16.74 -18.75 -0.31 -8.53 16 18 O -0.51 -5.93 11.78 -39.24 -0.46 -6.39 16 19 C -0.10 -1.26 4.57 -26.73 -0.12 -1.38 16 20 C -0.12 -1.53 5.70 -26.72 -0.15 -1.68 16 21 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 22 C -0.13 -1.78 5.63 -26.75 -0.15 -1.94 16 23 C -0.08 -1.11 3.66 -26.76 -0.10 -1.20 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.40 7.17 6.63 -40.82 -0.27 6.90 16 29 H 0.41 2.95 9.10 45.56 0.41 3.36 16 30 H 0.08 1.02 7.54 -51.93 -0.39 0.62 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.13 7.22 -51.93 -0.37 0.75 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.61 5.51 -51.93 -0.29 1.32 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -31.59 304.50 -5.37 -36.97 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.82 Total: 8.52 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.81 Total: -2.30 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.51 Total: -38.87 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.70 Total: -26.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.59 -5.37 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.868 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds