Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.50697 * 109.47030 * 60.00195 * 15 13 12 17 17 O 1.20823 * 119.99861 * 120.00040 * 16 15 13 18 18 O 1.34224 * 120.00079 * 299.99902 * 16 15 13 19 19 C 1.53000 * 109.47208 * 300.00162 * 15 13 12 20 20 C 1.53005 * 109.47170 * 300.00110 * 19 15 13 21 21 C 1.53008 * 109.46872 * 300.00057 * 20 19 15 22 22 C 1.53000 * 109.47269 * 60.00004 * 21 20 19 23 23 C 1.52998 * 109.47052 * 180.02562 * 15 13 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 0.96701 * 117.00275 * 180.02562 * 18 16 15 30 30 H 1.09002 * 109.47125 * 59.99974 * 19 15 13 31 31 H 1.08992 * 109.47138 * 180.02562 * 19 15 13 32 32 H 1.08994 * 109.47419 * 179.97438 * 20 19 15 33 33 H 1.08998 * 109.46860 * 59.99440 * 20 19 15 34 34 H 1.08998 * 109.46656 * 299.99881 * 21 20 19 35 35 H 1.09006 * 109.46635 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.46957 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.47284 * 59.99565 * 22 21 20 38 38 H 1.09001 * 109.47307 * 179.97438 * 23 15 13 39 39 H 1.09005 * 109.47365 * 300.00129 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 1.7185 -1.8651 -3.9262 17 8 1.1546 -1.8863 -4.9946 18 8 1.5163 -2.8535 -3.0409 19 6 4.0513 -1.2800 -3.3223 20 6 4.9959 -0.1265 -2.9786 21 6 5.0475 0.8567 -4.1498 22 6 3.6450 1.4077 -4.4153 23 6 2.7010 0.2543 -4.7588 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 2.2490 -1.6318 -1.1526 29 1 0.9111 -3.5607 -3.3030 30 1 4.0145 -1.9804 -2.4879 31 1 4.4144 -1.7935 -4.2124 32 1 5.9948 -0.5190 -2.7890 33 1 4.6329 0.3875 -2.0886 34 1 5.4104 0.3427 -5.0398 35 1 5.7201 1.6787 -3.9048 36 1 3.6819 2.1084 -5.2494 37 1 3.2820 1.9216 -3.5252 38 1 3.0644 -0.2595 -5.6488 39 1 1.7021 0.6473 -4.9481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603118461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = -166.732928 kcal Electronic energy + Delta-G solvation = -22292.385996 eV Core-core repulsion = 19005.307661 eV Total energy + Delta-G solvation = -3287.078335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.45900 -40.52069 -38.43279 -37.21711 -36.75573 -34.49480 -33.03622 -31.82066 -31.08421 -27.24121 -25.86207 -24.18614 -23.71944 -22.24231 -21.66946 -20.67153 -19.28914 -18.73974 -18.12488 -17.57479 -17.38679 -16.60935 -16.13337 -15.74800 -15.41035 -15.15369 -15.01233 -14.71561 -14.57607 -14.16188 -13.78003 -13.73859 -13.39060 -13.23991 -13.19461 -13.04932 -12.78797 -12.64223 -12.18058 -12.04746 -11.97540 -11.67973 -11.54883 -11.28707 -11.22748 -11.12994 -10.87157 -10.54716 -9.87161 -8.37002 -6.42394 0.88663 1.27205 1.35733 1.44385 1.45527 2.07903 2.26217 2.33802 2.99158 3.28384 3.55196 3.78287 3.97626 4.17024 4.23634 4.33665 4.42573 4.45313 4.51208 4.54143 4.64477 4.68148 4.80602 4.93938 4.98840 5.02269 5.18352 5.23931 5.29405 5.32182 5.34424 5.39857 5.47235 5.54644 5.70091 6.13340 6.58791 6.79048 6.85206 7.18179 7.36002 8.78038 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.006536 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.841556 B = 4282.843205 C = 4605.198920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.026 0.974 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.935 3.065 9 H -0.262 1.262 10 H -0.292 1.292 11 H -0.262 1.262 12 N -0.688 5.688 13 C 0.518 3.482 14 O -0.567 6.567 15 C -0.067 4.067 16 C 0.500 3.500 17 O -0.528 6.528 18 O -0.502 6.502 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.078 4.078 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.270 0.730 28 H 0.409 0.591 29 H 0.433 0.567 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -2.320 -16.043 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.044 0.956 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.762 3.238 9 H -0.188 1.188 10 H -0.219 1.219 11 H -0.187 1.187 12 N -0.337 5.337 13 C 0.303 3.697 14 O -0.447 6.447 15 C -0.071 4.071 16 C 0.342 3.658 17 O -0.417 6.417 18 O -0.317 6.317 19 C -0.138 4.138 20 C -0.162 4.162 21 C -0.152 4.152 22 C -0.170 4.170 23 C -0.115 4.115 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.246 0.754 29 H 0.296 0.704 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.474 -1.226 -16.021 16.439 hybrid contribution -1.043 -0.234 0.623 1.237 sum 2.432 -1.459 -15.398 15.657 Atomic orbital electron populations 1.22364 0.98072 1.01686 0.99338 1.18797 0.91005 0.93300 0.83106 0.95618 1.21201 1.32296 1.13559 0.89657 0.92254 1.25497 0.96774 0.99145 0.95398 1.69968 1.46617 1.41808 0.98616 0.86069 0.79803 0.80637 0.77254 1.18802 1.21944 1.18701 1.46061 1.64370 1.14512 1.08768 1.20262 0.77759 0.87027 0.84630 1.90601 1.51745 1.17056 1.85293 1.20980 0.96993 0.92918 0.96222 1.22834 0.79378 0.82279 0.81325 1.90697 1.47904 1.77501 1.25642 1.84479 1.64783 1.34952 1.47443 1.21671 0.88934 0.98744 1.04500 1.21597 1.00186 0.96071 0.98308 1.21564 0.96195 0.98871 0.98543 1.21775 0.95109 0.97310 1.02847 1.21244 1.00840 0.94970 0.94481 0.93900 0.93963 0.91619 0.92073 0.75373 0.70352 0.89831 0.87494 0.88901 0.94499 0.89588 0.91223 0.90254 0.91975 0.88748 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.80 8.96 71.98 0.65 -6.16 16 2 C 0.24 11.34 2.15 44.25 0.10 11.43 16 3 H 0.03 1.34 6.64 -2.39 -0.02 1.32 16 4 C -0.53 -28.25 9.31 25.60 0.24 -28.01 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.77 5.45 84.66 0.46 2.23 16 7 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 8 Si 0.93 44.20 24.37 68.60 1.67 45.88 16 9 H -0.26 -11.72 6.87 99.48 0.68 -11.04 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.26 -12.33 6.53 99.48 0.65 -11.68 16 12 N -0.69 -26.65 4.73 -446.09 -2.11 -28.76 16 13 C 0.52 18.95 4.92 87.66 0.43 19.39 16 14 O -0.57 -24.41 13.32 -3.03 -0.04 -24.45 16 15 C -0.07 -1.85 0.57 -53.68 -0.03 -1.88 16 16 C 0.50 13.23 6.91 71.23 0.49 13.73 16 17 O -0.53 -15.95 16.74 21.97 0.37 -15.59 16 18 O -0.50 -10.58 11.78 -51.36 -0.61 -11.19 16 19 C -0.10 -2.22 4.57 30.60 0.14 -2.08 16 20 C -0.12 -2.87 5.70 30.60 0.17 -2.70 16 21 C -0.11 -2.34 5.92 30.60 0.18 -2.16 16 22 C -0.13 -3.39 5.63 30.58 0.17 -3.21 16 23 C -0.08 -2.05 3.66 30.58 0.11 -1.93 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.87 3.27 -2.39 -0.01 1.86 16 26 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 28 H 0.41 14.39 6.63 -92.71 -0.61 13.77 16 29 H 0.43 5.02 9.10 -74.06 -0.67 4.35 16 30 H 0.08 1.85 7.54 -2.39 -0.02 1.83 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.12 7.22 -2.39 -0.02 1.10 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.06 5.51 -2.39 -0.01 2.05 16 38 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 39 H 0.05 1.65 8.06 -2.38 -0.02 1.64 16 Total: -1.00 -68.43 304.50 2.41 -66.02 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.29 Total: 24.07 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 3.11 Total: -1.36 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.81 Total: -83.38 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.28 Total: -51.23 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.88 kcal Total: -68.43 2.41 -66.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.712 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds