Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47376 * 2 1 4 4 C 1.50698 * 109.47085 * 120.00395 * 2 1 3 5 5 H 1.08003 * 120.00080 * 120.00101 * 4 2 1 6 6 C 1.37875 * 119.99758 * 299.99342 * 4 2 1 7 7 N 1.31508 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46906 * 60.00810 * 8 6 4 10 10 H 1.48494 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47196 * 300.00735 * 8 6 4 12 12 C 1.50698 * 109.47071 * 240.00427 * 2 1 3 13 13 O 1.21289 * 119.99883 * 231.73469 * 12 2 1 14 14 N 1.34777 * 120.00202 * 51.73889 * 12 2 1 15 15 C 1.46931 * 120.63009 * 204.92653 * 14 12 2 16 16 H 1.09001 * 109.58703 * 113.69423 * 15 14 12 17 17 C 1.53002 * 109.58612 * 353.41180 * 15 14 12 18 18 C 1.53164 * 108.76582 * 233.62720 * 15 14 12 19 19 C 1.53042 * 109.32616 * 305.35716 * 18 15 14 20 20 C 1.53039 * 109.52917 * 61.37271 * 19 18 15 21 21 C 1.46926 * 120.63112 * 24.94395 * 14 12 2 22 22 H 1.09003 * 109.70069 * 246.22831 * 21 14 12 23 23 C 1.50696 * 109.58652 * 6.58439 * 21 14 12 24 24 O 1.20829 * 120.00041 * 65.26896 * 23 21 14 25 25 O 1.34230 * 120.00158 * 245.26980 * 23 21 14 26 26 H 1.08990 * 109.47560 * 191.00353 * 1 2 3 27 27 H 1.09003 * 109.46610 * 311.00627 * 1 2 3 28 28 H 1.08999 * 109.47120 * 70.99718 * 1 2 3 29 29 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46773 * 58.96808 * 17 15 14 31 31 H 1.08993 * 109.46901 * 178.96710 * 17 15 14 32 32 H 1.08997 * 109.46889 * 298.97090 * 17 15 14 33 33 H 1.08997 * 109.47848 * 185.40725 * 18 15 14 34 34 H 1.09005 * 109.50186 * 65.31817 * 18 15 14 35 35 H 1.09003 * 109.45730 * 301.35143 * 19 18 15 36 36 H 1.09002 * 109.45604 * 181.38708 * 19 18 15 37 37 H 1.08992 * 109.49613 * 58.59603 * 20 19 18 38 38 H 1.08998 * 109.49546 * 178.65836 * 20 19 18 39 39 H 0.96702 * 117.00353 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.8063 -1.1211 4.0081 10 1 1.8261 -0.4208 5.2203 11 1 1.8258 -2.5205 4.0075 12 6 2.0323 -0.7103 -1.2305 13 8 2.8477 -1.6020 -1.1256 14 7 1.5755 -0.3547 -2.4476 15 6 1.5930 -1.3114 -3.5627 16 1 0.5704 -1.5565 -3.8499 17 6 2.3247 -2.5850 -3.1343 18 6 2.3236 -0.6733 -4.7479 19 6 1.6702 0.6696 -5.0823 20 6 1.7877 1.6093 -3.8801 21 6 1.0509 0.9971 -2.6847 22 1 -0.0161 0.9445 -2.9011 23 6 1.2771 1.8484 -1.4620 24 8 2.4021 2.1180 -1.1132 25 8 0.2288 2.3072 -0.7603 26 1 -0.3634 -1.0087 0.1961 27 1 -0.3633 0.6743 0.7756 28 1 -0.3633 0.3346 -0.9716 29 1 0.7084 1.1608 3.4845 30 1 1.8211 -3.0205 -2.2713 31 1 2.3206 -3.3003 -3.9567 32 1 3.3536 -2.3413 -2.8698 33 1 2.2602 -1.3340 -5.6124 34 1 3.3700 -0.5138 -4.4873 35 1 0.6178 0.5124 -5.3189 36 1 2.1729 1.1142 -5.9413 37 1 2.8390 1.7472 -3.6277 38 1 1.3433 2.5734 -4.1271 39 1 0.4237 2.8490 0.0166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = -82.622859 kcal Electronic energy + Delta-G solvation = -23060.540211 eV Core-core repulsion = 19777.109162 eV Total energy + Delta-G solvation = -3283.431049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27350 -38.92166 -36.96695 -35.59172 -33.80718 -32.64359 -32.51086 -30.14011 -27.58919 -25.28467 -25.00999 -23.56749 -21.84706 -20.92403 -20.45112 -18.49178 -17.63130 -16.91291 -16.09642 -15.73355 -15.37607 -15.06270 -14.80549 -14.43309 -13.96345 -13.64370 -13.50020 -12.70116 -12.54258 -12.36172 -12.05281 -11.78019 -11.75571 -11.52255 -11.20638 -11.11484 -10.94657 -10.86301 -10.81032 -10.70194 -10.56070 -10.43377 -10.00180 -9.87704 -9.73970 -8.65952 -8.35751 -8.18133 -7.91908 -6.00764 -3.98323 2.42522 3.31024 3.38275 3.39890 3.45848 3.56379 3.69383 4.49507 4.73983 4.84663 4.95802 5.03522 5.26894 5.35315 5.44483 5.54897 5.63194 5.71594 5.77081 5.86272 5.97057 6.04540 6.06782 6.18781 6.29518 6.50985 6.69835 6.77708 6.87143 6.95909 7.08246 7.16965 7.55463 7.78274 7.98077 8.09168 8.35638 8.45499 9.04274 9.15951 9.63535 11.09062 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.007873 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.698086 B = 3555.581515 C = 4299.260199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.039 4.039 3 H 0.103 0.897 4 C -0.491 4.491 5 H 0.069 0.931 6 C 0.058 3.942 7 N -0.899 5.899 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.530 3.470 13 O -0.522 6.522 14 N -0.628 5.628 15 C 0.149 3.851 16 H 0.066 0.934 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.128 4.128 21 C 0.164 3.836 22 H 0.096 0.904 23 C 0.498 3.502 24 O -0.500 6.500 25 O -0.502 6.502 26 H 0.025 0.975 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 2.705 -14.465 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.060 4.060 3 H 0.120 0.880 4 C -0.530 4.530 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 C 0.322 3.678 13 O -0.396 6.396 14 N -0.369 5.369 15 C 0.047 3.953 16 H 0.084 0.916 17 C -0.199 4.199 18 C -0.172 4.172 19 C -0.151 4.151 20 C -0.166 4.166 21 C 0.059 3.941 22 H 0.113 0.887 23 C 0.341 3.659 24 O -0.389 6.389 25 O -0.315 6.315 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.885 2.148 -14.457 14.898 hybrid contribution 0.313 -0.146 1.436 1.477 sum -2.572 2.002 -13.021 13.423 Atomic orbital electron populations 1.21979 0.95790 1.00788 0.99698 1.20411 0.94560 1.01102 0.89886 0.88048 1.21011 1.30491 1.12518 0.88949 0.91280 1.24873 0.95204 0.95194 0.98874 1.69836 1.37435 1.23247 1.23422 0.86514 0.79278 0.79635 0.81734 1.20292 1.21376 1.20362 1.22013 0.78850 0.83192 0.83699 1.90519 1.30455 1.32573 1.86030 1.48217 1.67166 1.10533 1.10969 1.21153 0.98767 0.89412 0.86018 0.91575 1.22194 1.03229 0.94577 0.99945 1.22047 1.00708 0.96526 0.97947 1.21470 1.01255 0.95403 0.96972 1.21929 1.02283 0.98721 0.93664 1.20591 1.00020 0.82735 0.90801 0.88650 1.22300 0.82901 0.77597 0.83144 1.90714 1.25200 1.55530 1.67417 1.84574 1.38963 1.65238 1.42691 0.95571 0.89306 0.95787 0.93096 0.91698 0.93943 0.90024 0.91057 0.91216 0.91550 0.91290 0.90041 0.90382 0.72174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 6.74 37.16 0.25 -2.66 16 2 C -0.04 -1.01 1.66 -92.93 -0.15 -1.17 16 3 H 0.10 2.70 3.32 -57.09 -0.19 2.51 16 4 C -0.49 -14.41 8.34 -34.44 -0.29 -14.70 16 5 H 0.07 2.14 6.79 -52.48 -0.36 1.79 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.00 11.46 55.43 0.64 -24.36 16 8 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.53 12.65 6.01 -10.99 -0.07 12.58 16 13 O -0.52 -13.68 11.54 5.55 0.06 -13.62 16 14 N -0.63 -11.62 2.78 -159.05 -0.44 -12.06 16 15 C 0.15 2.26 3.49 -67.61 -0.24 2.02 16 16 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.14 -2.38 7.64 37.16 0.28 -2.09 16 18 C -0.13 -1.61 5.37 -26.62 -0.14 -1.75 16 19 C -0.11 -1.16 5.88 -26.69 -0.16 -1.32 16 20 C -0.13 -1.60 5.29 -26.61 -0.14 -1.74 16 21 C 0.16 2.58 2.28 -68.76 -0.16 2.42 16 22 H 0.10 1.29 7.65 -51.93 -0.40 0.89 16 23 C 0.50 9.19 3.66 36.00 0.13 9.32 16 24 O -0.50 -11.03 14.82 -18.75 -0.28 -11.31 16 25 O -0.50 -8.43 9.76 -39.26 -0.38 -8.81 16 26 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.09 2.18 5.97 -51.93 -0.31 1.87 16 28 H 0.02 0.47 4.53 -51.93 -0.24 0.24 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.06 1.26 7.00 -51.93 -0.36 0.89 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.56 6.61 -51.93 -0.34 1.22 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.42 6.43 9.10 45.56 0.41 6.84 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -33.07 295.12 -6.45 -39.52 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.70 Total: 6.32 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.77 Total: 2.48 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.19 Total: -36.42 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.60 Total: -33.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.07 -6.45 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.101 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds