Wall clock time and date at job start Mon Mar 30 2020 01:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47376 * 2 1 4 4 C 1.50698 * 109.47085 * 120.00395 * 2 1 3 5 5 H 1.08003 * 120.00080 * 120.00101 * 4 2 1 6 6 C 1.37875 * 119.99758 * 299.99342 * 4 2 1 7 7 N 1.31508 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46906 * 60.00810 * 8 6 4 10 10 H 1.48494 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47196 * 300.00735 * 8 6 4 12 12 C 1.50698 * 109.47071 * 240.00427 * 2 1 3 13 13 O 1.21289 * 119.99883 * 231.73469 * 12 2 1 14 14 N 1.34777 * 120.00202 * 51.73889 * 12 2 1 15 15 C 1.46931 * 120.63009 * 204.92653 * 14 12 2 16 16 H 1.09001 * 109.58703 * 113.69423 * 15 14 12 17 17 C 1.53002 * 109.58612 * 353.41180 * 15 14 12 18 18 C 1.53164 * 108.76582 * 233.62720 * 15 14 12 19 19 C 1.53042 * 109.32616 * 305.35716 * 18 15 14 20 20 C 1.53039 * 109.52917 * 61.37271 * 19 18 15 21 21 C 1.46926 * 120.63112 * 24.94395 * 14 12 2 22 22 H 1.09003 * 109.70069 * 246.22831 * 21 14 12 23 23 C 1.50696 * 109.58652 * 6.58439 * 21 14 12 24 24 O 1.20829 * 120.00041 * 65.26896 * 23 21 14 25 25 O 1.34230 * 120.00158 * 245.26980 * 23 21 14 26 26 H 1.08990 * 109.47560 * 191.00353 * 1 2 3 27 27 H 1.09003 * 109.46610 * 311.00627 * 1 2 3 28 28 H 1.08999 * 109.47120 * 70.99718 * 1 2 3 29 29 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46773 * 58.96808 * 17 15 14 31 31 H 1.08993 * 109.46901 * 178.96710 * 17 15 14 32 32 H 1.08997 * 109.46889 * 298.97090 * 17 15 14 33 33 H 1.08997 * 109.47848 * 185.40725 * 18 15 14 34 34 H 1.09005 * 109.50186 * 65.31817 * 18 15 14 35 35 H 1.09003 * 109.45730 * 301.35143 * 19 18 15 36 36 H 1.09002 * 109.45604 * 181.38708 * 19 18 15 37 37 H 1.08992 * 109.49613 * 58.59603 * 20 19 18 38 38 H 1.08998 * 109.49546 * 178.65836 * 20 19 18 39 39 H 0.96702 * 117.00353 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.8063 -1.1211 4.0081 10 1 1.8261 -0.4208 5.2203 11 1 1.8258 -2.5205 4.0075 12 6 2.0323 -0.7103 -1.2305 13 8 2.8477 -1.6020 -1.1256 14 7 1.5755 -0.3547 -2.4476 15 6 1.5930 -1.3114 -3.5627 16 1 0.5704 -1.5565 -3.8499 17 6 2.3247 -2.5850 -3.1343 18 6 2.3236 -0.6733 -4.7479 19 6 1.6702 0.6696 -5.0823 20 6 1.7877 1.6093 -3.8801 21 6 1.0509 0.9971 -2.6847 22 1 -0.0161 0.9445 -2.9011 23 6 1.2771 1.8484 -1.4620 24 8 2.4021 2.1180 -1.1132 25 8 0.2288 2.3072 -0.7603 26 1 -0.3634 -1.0087 0.1961 27 1 -0.3633 0.6743 0.7756 28 1 -0.3633 0.3346 -0.9716 29 1 0.7084 1.1608 3.4845 30 1 1.8211 -3.0205 -2.2713 31 1 2.3206 -3.3003 -3.9567 32 1 3.3536 -2.3413 -2.8698 33 1 2.2602 -1.3340 -5.6124 34 1 3.3700 -0.5138 -4.4873 35 1 0.6178 0.5124 -5.3189 36 1 2.1729 1.1142 -5.9413 37 1 2.8390 1.7472 -3.6277 38 1 1.3433 2.5734 -4.1271 39 1 0.4237 2.8490 0.0166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603119420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:50 Heat of formation + Delta-G solvation = -105.996370 kcal Electronic energy + Delta-G solvation = -23061.553763 eV Core-core repulsion = 19777.109162 eV Total energy + Delta-G solvation = -3284.444600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.78194 -40.44328 -38.42713 -37.06760 -35.77078 -34.15601 -33.74511 -32.02908 -28.91002 -27.22898 -26.36464 -25.20985 -23.32668 -22.24014 -21.75810 -20.01219 -19.07768 -18.80940 -17.64230 -17.32445 -16.92686 -16.78117 -16.45800 -15.99149 -15.21679 -15.07394 -14.67701 -14.30498 -14.04527 -13.79514 -13.61136 -13.44059 -13.28356 -13.05336 -12.90364 -12.80223 -12.65934 -12.42242 -12.20881 -12.08705 -12.05765 -11.73560 -11.69687 -11.54053 -11.34966 -10.73317 -10.38534 -9.92276 -9.45433 -8.17459 -6.21885 0.97633 1.34987 1.37027 1.45262 1.75914 2.01430 2.20862 2.42800 3.13228 3.65860 3.79766 3.93080 3.96947 4.15807 4.30594 4.32610 4.39407 4.49934 4.72515 4.80135 4.80976 4.90550 4.93193 4.96879 5.06720 5.08613 5.17222 5.23541 5.38371 5.49536 5.51791 5.67496 5.75150 5.77992 5.95106 6.19405 6.49329 6.79577 6.98002 7.36398 7.44008 8.89945 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.007873 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.698086 B = 3555.581515 C = 4299.260199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.047 4.047 3 H 0.097 0.903 4 C -0.528 4.528 5 H 0.037 0.963 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.562 6.562 14 N -0.623 5.623 15 C 0.140 3.860 16 H 0.099 0.901 17 C -0.136 4.136 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.124 4.124 21 C 0.156 3.844 22 H 0.132 0.868 23 C 0.494 3.506 24 O -0.543 6.543 25 O -0.495 6.495 26 H 0.004 0.996 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.265 0.735 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 3.339 -16.877 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.068 4.068 3 H 0.113 0.887 4 C -0.567 4.567 5 H 0.055 0.945 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.193 1.193 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.440 6.440 14 N -0.363 5.363 15 C 0.039 3.961 16 H 0.117 0.883 17 C -0.193 4.193 18 C -0.167 4.167 19 C -0.143 4.143 20 C -0.162 4.162 21 C 0.052 3.948 22 H 0.150 0.850 23 C 0.339 3.661 24 O -0.435 6.435 25 O -0.307 6.307 26 H 0.024 0.976 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -4.704 2.817 -16.909 17.776 hybrid contribution 0.859 -0.313 2.172 2.357 sum -3.845 2.503 -14.737 15.435 Atomic orbital electron populations 1.21772 0.94141 0.99201 1.01123 1.20394 0.95840 1.00525 0.90020 0.88702 1.21162 1.31510 1.12535 0.91468 0.94456 1.25482 0.95352 0.95978 1.00911 1.69881 1.36954 1.23187 1.24191 0.85728 0.78333 0.78867 0.79337 1.20944 1.19346 1.20297 1.21697 0.78983 0.82680 0.85243 1.90511 1.32191 1.34259 1.87051 1.48143 1.65799 1.12170 1.10155 1.21554 1.00797 0.88005 0.85740 0.88276 1.22036 1.00906 0.96502 0.99885 1.22027 0.98909 0.98356 0.97365 1.21509 1.03136 0.93352 0.96304 1.21994 1.00293 1.00803 0.93088 1.21098 1.02463 0.80758 0.90470 0.85009 1.23054 0.82385 0.77069 0.83589 1.90694 1.26941 1.57178 1.68712 1.84543 1.38355 1.65049 1.42764 0.97643 0.90570 0.92286 0.92604 0.95339 0.90082 0.93466 0.87661 0.93731 0.88692 0.88683 0.92927 0.87195 0.71637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.89 6.74 71.98 0.48 -4.40 16 2 C -0.05 -2.51 1.66 -12.29 -0.02 -2.53 16 3 H 0.10 5.22 3.32 -62.49 -0.21 5.01 16 4 C -0.53 -32.39 8.34 25.60 0.21 -32.17 16 5 H 0.04 2.46 6.79 -2.91 -0.02 2.44 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.90 -50.53 11.46 21.45 0.25 -50.29 16 8 Si 0.95 46.78 29.54 68.60 2.03 48.80 16 9 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.52 25.72 6.01 87.66 0.53 26.25 16 13 O -0.56 -31.32 11.54 -3.06 -0.04 -31.35 16 14 N -0.62 -22.48 2.78 -775.49 -2.16 -24.63 16 15 C 0.14 3.91 3.49 44.97 0.16 4.07 16 16 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.14 -4.54 7.64 71.98 0.55 -3.99 16 18 C -0.13 -2.63 5.37 30.66 0.16 -2.47 16 19 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 20 C -0.12 -2.69 5.29 30.67 0.16 -2.52 16 21 C 0.16 4.51 2.28 44.23 0.10 4.61 16 22 H 0.13 2.91 7.65 -2.39 -0.02 2.89 16 23 C 0.49 17.90 3.66 71.23 0.26 18.16 16 24 O -0.54 -24.54 14.82 21.96 0.33 -24.22 16 25 O -0.49 -16.05 9.76 -51.41 -0.50 -16.55 16 26 H 0.00 0.22 8.10 -2.39 -0.02 0.20 16 27 H 0.08 3.72 5.97 -2.39 -0.01 3.71 16 28 H 0.06 2.26 4.53 -2.39 -0.01 2.25 16 29 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.03 1.13 7.00 -2.39 -0.02 1.11 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.88 6.61 -2.39 -0.02 1.87 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.47 7.87 -2.39 -0.02 1.45 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.42 12.92 9.10 -74.06 -0.67 12.24 16 Total: -1.00 -77.16 295.12 3.33 -73.83 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.20 Total: 19.11 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 3.23 Total: 5.30 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.91 Total: -74.92 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -0.21 Total: -72.12 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -77.16 3.33 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.165 kcal (2) G-P(sol) polarization free energy of solvation -77.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds