Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46830 * 239.99828 * 2 1 3 5 5 H 1.08000 * 120.00019 * 274.70998 * 4 2 1 6 6 C 1.37879 * 119.99755 * 94.71038 * 4 2 1 7 7 N 1.31511 * 119.99813 * 183.58271 * 6 4 2 8 8 Si 1.86801 * 120.00003 * 3.59236 * 6 4 2 9 9 H 1.48500 * 109.47423 * 93.30857 * 8 6 4 10 10 H 1.48504 * 109.46755 * 213.30702 * 8 6 4 11 11 H 1.48499 * 109.46986 * 333.30454 * 8 6 4 12 12 C 1.50694 * 109.46975 * 119.99956 * 2 1 3 13 13 O 1.21286 * 120.00046 * 120.00139 * 12 2 1 14 14 N 1.34777 * 120.00262 * 299.99849 * 12 2 1 15 15 C 1.46496 * 120.00147 * 185.38094 * 14 12 2 16 16 C 1.53001 * 109.47285 * 294.83558 * 15 14 12 17 17 C 1.53005 * 109.47062 * 54.83422 * 15 14 12 18 18 C 1.50700 * 109.46925 * 179.97438 * 17 15 14 19 19 O 1.20825 * 120.00240 * 0.02562 * 18 17 15 20 20 O 1.34235 * 119.99766 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47400 * 174.83212 * 15 14 12 22 22 C 1.53002 * 117.51723 * 345.32476 * 21 15 14 23 23 C 1.53001 * 60.00060 * 107.47552 * 22 21 15 24 24 H 1.08993 * 109.47651 * 55.35605 * 1 2 3 25 25 H 1.09001 * 109.46827 * 175.35718 * 1 2 3 26 26 H 1.08996 * 109.47146 * 295.34841 * 1 2 3 27 27 H 0.96998 * 120.00043 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99982 * 5.38263 * 14 12 2 29 29 H 1.08994 * 109.46839 * 299.99942 * 16 15 14 30 30 H 1.09002 * 109.47098 * 60.00283 * 16 15 14 31 31 H 1.09006 * 109.47281 * 179.97438 * 16 15 14 32 32 H 1.08990 * 109.47227 * 300.00104 * 17 15 14 33 33 H 1.09001 * 109.47199 * 60.00406 * 17 15 14 34 34 H 0.96707 * 116.99542 * 180.02562 * 20 18 17 35 35 H 1.08991 * 115.55459 * 199.62047 * 21 15 14 36 36 H 1.08993 * 117.49982 * 214.96547 * 22 21 15 37 37 H 1.09001 * 117.49711 * 359.97438 * 22 21 15 38 38 H 1.09001 * 117.49795 * 252.51038 * 23 22 21 39 39 H 1.08995 * 117.49957 * 107.49152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1399 -1.7851 -1.2275 6 6 2.3545 0.0115 -2.3601 7 7 2.7254 -0.6133 -3.4562 8 14 2.2645 1.8772 -2.3334 9 1 3.5973 2.4322 -1.9860 10 1 1.8559 2.3721 -3.6726 11 1 1.2686 2.3102 -1.3205 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.2893 -0.8677 3.6484 16 6 1.8004 -2.3128 3.7650 17 6 3.8152 -0.8530 3.5372 18 6 4.4144 -1.4879 4.7656 19 8 3.6949 -1.9094 5.6399 20 8 5.7476 -1.5852 4.8883 21 6 1.8608 -0.0825 4.8897 22 6 1.2564 1.3064 4.6738 23 6 0.3621 0.1410 5.1016 24 1 -0.3634 0.5841 -0.8454 25 1 -0.3633 -1.0243 -0.0832 26 1 -0.3633 0.4399 0.9287 27 1 2.9524 -0.1055 -4.2508 28 1 1.0867 0.4905 2.5451 29 1 0.7134 -2.3233 3.8442 30 1 2.1058 -2.8722 2.8807 31 1 2.2342 -2.7726 4.6530 32 1 4.1205 -1.4123 2.6530 33 1 4.1636 0.1765 3.4542 34 1 6.0851 -2.0005 5.6938 35 1 2.4777 -0.2307 5.7759 36 1 1.4758 2.0719 5.4180 37 1 1.1644 1.6612 3.6473 38 1 -0.3185 -0.2709 4.3564 39 1 -0.0069 0.1398 6.1272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -98.580899 kcal Electronic energy + Delta-G solvation = -21844.334535 eV Core-core repulsion = 18560.211494 eV Total energy + Delta-G solvation = -3284.123041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88346 -39.42949 -37.55194 -36.11469 -33.99315 -33.57840 -31.85976 -30.53235 -28.12370 -25.27092 -24.19774 -22.68903 -22.30895 -21.69696 -19.80911 -18.87241 -18.14926 -17.10328 -16.72131 -16.11476 -15.95469 -15.28792 -14.72352 -14.48306 -14.11589 -13.72507 -13.40492 -13.09449 -12.94877 -12.63026 -12.53799 -12.27824 -11.91362 -11.57583 -11.45540 -11.38412 -11.19529 -11.04922 -10.83798 -10.78184 -10.37876 -10.26187 -10.20424 -10.09262 -9.80077 -9.16950 -8.63050 -8.59719 -8.47868 -6.07663 -4.07074 2.21481 2.95986 3.22602 3.28801 3.32577 3.56412 3.72732 3.88379 4.36739 4.51549 4.72182 4.87920 5.01473 5.21412 5.22677 5.33332 5.52059 5.59358 5.74905 5.77987 5.93209 5.99219 6.03794 6.07874 6.12927 6.16931 6.29418 6.36846 6.47991 6.52001 6.70726 6.81860 7.04422 7.16519 7.54545 7.90165 8.13028 8.52965 9.08220 9.11856 9.51868 11.05542 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.005989 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.988705 B = 4674.488144 C = 5204.234178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.007 4.007 3 H 0.056 0.944 4 C -0.494 4.494 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.522 3.478 13 O -0.524 6.524 14 N -0.743 5.743 15 C 0.223 3.777 16 C -0.169 4.169 17 C -0.130 4.130 18 C 0.488 3.512 19 O -0.514 6.514 20 O -0.516 6.516 21 C -0.153 4.153 22 C -0.189 4.189 23 C -0.173 4.173 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.024 0.976 27 H 0.264 0.736 28 H 0.396 0.604 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.406 0.594 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 3.956 17.931 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.074 0.926 4 C -0.532 4.532 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.532 5.532 8 Si 0.697 3.303 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.311 3.689 13 O -0.399 6.399 14 N -0.401 5.401 15 C 0.136 3.864 16 C -0.227 4.227 17 C -0.169 4.169 18 C 0.331 3.669 19 O -0.403 6.403 20 O -0.328 6.328 21 C -0.171 4.171 22 C -0.226 4.226 23 C -0.210 4.210 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.690 3.335 17.482 17.811 hybrid contribution -0.036 1.192 0.476 1.284 sum -0.726 4.527 17.958 18.534 Atomic orbital electron populations 1.21963 0.96942 1.01367 0.98954 1.19410 0.94005 0.97137 0.92356 0.92568 1.20741 1.42923 0.96237 0.93263 0.89560 1.25030 0.94679 0.97930 0.95424 1.69885 1.45714 1.35615 1.02004 0.86973 0.78818 0.86865 0.77667 1.20277 1.21186 1.18731 1.21772 0.79042 0.84192 0.83901 1.90510 1.37447 1.25512 1.86404 1.46734 1.49615 1.38544 1.05247 1.19262 0.89587 0.93708 0.83842 1.22400 1.01250 0.95026 1.04004 1.21865 0.95798 1.03402 0.95799 1.23443 0.79757 0.75517 0.88146 1.90627 1.61085 1.46100 1.42466 1.84594 1.24833 1.75583 1.47769 1.22742 0.97126 0.97593 0.99627 1.23068 1.05157 0.91801 1.02598 1.22930 0.93192 1.02277 1.02565 0.92741 0.92863 0.95686 0.92584 0.76635 0.92740 0.90681 0.90153 0.84654 0.87757 0.73592 0.85888 0.88644 0.88418 0.88504 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.11 37.16 0.34 -2.26 16 2 C -0.01 -0.16 2.25 -92.92 -0.21 -0.37 16 3 H 0.06 1.22 5.18 -51.93 -0.27 0.96 16 4 C -0.49 -13.77 8.37 -34.44 -0.29 -14.05 16 5 H 0.09 2.74 7.60 -52.49 -0.40 2.34 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 8 Si 0.87 20.46 27.15 -169.99 -4.61 15.85 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -5.65 6.49 56.52 0.37 -5.28 16 12 C 0.52 10.80 6.56 -10.99 -0.07 10.73 16 13 O -0.52 -12.50 12.01 5.55 0.07 -12.44 16 14 N -0.74 -11.79 4.72 -47.61 -0.22 -12.01 16 15 C 0.22 3.24 0.60 -131.82 -0.08 3.16 16 16 C -0.17 -2.64 8.07 37.16 0.30 -2.34 16 17 C -0.13 -1.90 4.73 -27.88 -0.13 -2.03 16 18 C 0.49 6.41 7.63 36.01 0.27 6.68 16 19 O -0.51 -7.29 12.38 -18.75 -0.23 -7.52 16 20 O -0.52 -5.60 13.42 -39.27 -0.53 -6.13 16 21 C -0.15 -1.85 4.49 -90.62 -0.41 -2.26 16 22 C -0.19 -1.96 9.72 -26.73 -0.26 -2.22 16 23 C -0.17 -1.84 9.53 -26.73 -0.25 -2.10 16 24 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.38 7.33 -51.93 -0.38 0.00 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.40 5.44 4.85 -40.82 -0.20 5.24 16 29 H 0.05 0.81 7.72 -51.93 -0.40 0.40 16 30 H 0.07 1.37 6.37 -51.93 -0.33 1.04 16 31 H 0.08 1.24 5.52 -51.93 -0.29 0.95 16 32 H 0.14 2.36 5.99 -51.93 -0.31 2.05 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.41 2.44 9.10 45.56 0.41 2.85 16 35 H 0.12 1.55 6.01 -51.93 -0.31 1.23 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.02 5.96 -51.93 -0.31 0.71 16 38 H 0.10 1.07 8.00 -51.93 -0.42 0.66 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -32.64 309.44 -5.46 -38.10 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.48 Total: 11.03 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.89 Total: -5.15 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.55 Total: -38.40 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.69 Total: -26.09 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.61 Total: 15.85 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.64 -5.46 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.481 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds