Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46830 * 239.99828 * 2 1 3 5 5 H 1.08000 * 120.00019 * 274.70998 * 4 2 1 6 6 C 1.37879 * 119.99755 * 94.71038 * 4 2 1 7 7 N 1.31511 * 119.99813 * 183.58271 * 6 4 2 8 8 Si 1.86801 * 120.00003 * 3.59236 * 6 4 2 9 9 H 1.48500 * 109.47423 * 93.30857 * 8 6 4 10 10 H 1.48504 * 109.46755 * 213.30702 * 8 6 4 11 11 H 1.48499 * 109.46986 * 333.30454 * 8 6 4 12 12 C 1.50694 * 109.46975 * 119.99956 * 2 1 3 13 13 O 1.21286 * 120.00046 * 120.00139 * 12 2 1 14 14 N 1.34777 * 120.00262 * 299.99849 * 12 2 1 15 15 C 1.46496 * 120.00147 * 185.38094 * 14 12 2 16 16 C 1.53001 * 109.47285 * 294.83558 * 15 14 12 17 17 C 1.53005 * 109.47062 * 54.83422 * 15 14 12 18 18 C 1.50700 * 109.46925 * 179.97438 * 17 15 14 19 19 O 1.20825 * 120.00240 * 0.02562 * 18 17 15 20 20 O 1.34235 * 119.99766 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.47400 * 174.83212 * 15 14 12 22 22 C 1.53002 * 117.51723 * 345.32476 * 21 15 14 23 23 C 1.53001 * 60.00060 * 107.47552 * 22 21 15 24 24 H 1.08993 * 109.47651 * 55.35605 * 1 2 3 25 25 H 1.09001 * 109.46827 * 175.35718 * 1 2 3 26 26 H 1.08996 * 109.47146 * 295.34841 * 1 2 3 27 27 H 0.96998 * 120.00043 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99982 * 5.38263 * 14 12 2 29 29 H 1.08994 * 109.46839 * 299.99942 * 16 15 14 30 30 H 1.09002 * 109.47098 * 60.00283 * 16 15 14 31 31 H 1.09006 * 109.47281 * 179.97438 * 16 15 14 32 32 H 1.08990 * 109.47227 * 300.00104 * 17 15 14 33 33 H 1.09001 * 109.47199 * 60.00406 * 17 15 14 34 34 H 0.96707 * 116.99542 * 180.02562 * 20 18 17 35 35 H 1.08991 * 115.55459 * 199.62047 * 21 15 14 36 36 H 1.08993 * 117.49982 * 214.96547 * 22 21 15 37 37 H 1.09001 * 117.49711 * 359.97438 * 22 21 15 38 38 H 1.09001 * 117.49795 * 252.51038 * 23 22 21 39 39 H 1.08995 * 117.49957 * 107.49152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1399 -1.7851 -1.2275 6 6 2.3545 0.0115 -2.3601 7 7 2.7254 -0.6133 -3.4562 8 14 2.2645 1.8772 -2.3334 9 1 3.5973 2.4322 -1.9860 10 1 1.8559 2.3721 -3.6726 11 1 1.2686 2.3102 -1.3205 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.2893 -0.8677 3.6484 16 6 1.8004 -2.3128 3.7650 17 6 3.8152 -0.8530 3.5372 18 6 4.4144 -1.4879 4.7656 19 8 3.6949 -1.9094 5.6399 20 8 5.7476 -1.5852 4.8883 21 6 1.8608 -0.0825 4.8897 22 6 1.2564 1.3064 4.6738 23 6 0.3621 0.1410 5.1016 24 1 -0.3634 0.5841 -0.8454 25 1 -0.3633 -1.0243 -0.0832 26 1 -0.3633 0.4399 0.9287 27 1 2.9524 -0.1055 -4.2508 28 1 1.0867 0.4905 2.5451 29 1 0.7134 -2.3233 3.8442 30 1 2.1058 -2.8722 2.8807 31 1 2.2342 -2.7726 4.6530 32 1 4.1205 -1.4123 2.6530 33 1 4.1636 0.1765 3.4542 34 1 6.0851 -2.0005 5.6938 35 1 2.4777 -0.2307 5.7759 36 1 1.4758 2.0719 5.4180 37 1 1.1644 1.6612 3.6473 38 1 -0.3185 -0.2709 4.3564 39 1 -0.0069 0.1398 6.1272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -122.519828 kcal Electronic energy + Delta-G solvation = -21845.372605 eV Core-core repulsion = 18560.211494 eV Total energy + Delta-G solvation = -3285.161111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03844 -40.70033 -38.82133 -37.08383 -35.68266 -34.98805 -33.67256 -32.08152 -29.33403 -27.20776 -25.45730 -24.19205 -23.13813 -22.71511 -21.29297 -20.18634 -19.16727 -19.06779 -18.19071 -17.23200 -16.99193 -16.64777 -16.07938 -15.95547 -15.74653 -15.04763 -14.66394 -14.59592 -14.38611 -14.09543 -14.01478 -13.61648 -13.20547 -12.94689 -12.85862 -12.59467 -12.49282 -12.43693 -12.27977 -12.06184 -11.95051 -11.70133 -11.45306 -11.18933 -11.12190 -11.02610 -10.72173 -10.19221 -9.97999 -8.23802 -6.30137 1.16825 1.38229 1.40409 1.51353 1.85454 2.00351 2.38204 2.54237 2.89298 3.13988 3.52446 3.62684 3.96929 4.07890 4.23084 4.25138 4.37620 4.44746 4.54904 4.66973 4.71291 4.76318 4.77721 4.84428 4.88866 4.94917 5.11651 5.15285 5.25264 5.28777 5.32003 5.52839 5.60593 5.62385 5.74633 6.29189 6.70095 6.88648 7.00642 7.31524 7.56489 8.94088 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.005989 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.988705 B = 4674.488144 C = 5204.234178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.012 4.012 3 H 0.074 0.926 4 C -0.502 4.502 5 H 0.023 0.977 6 C 0.004 3.996 7 N -0.953 5.953 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.219 1.219 12 C 0.523 3.477 13 O -0.566 6.566 14 N -0.720 5.720 15 C 0.222 3.778 16 C -0.162 4.162 17 C -0.133 4.133 18 C 0.496 3.504 19 O -0.524 6.524 20 O -0.514 6.514 21 C -0.164 4.164 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.410 0.590 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.428 0.572 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 7.198 20.601 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 H 0.092 0.908 4 C -0.540 4.540 5 H 0.042 0.958 6 C -0.192 4.192 7 N -0.593 5.593 8 Si 0.766 3.234 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.141 1.141 12 C 0.311 3.689 13 O -0.444 6.444 14 N -0.378 5.378 15 C 0.136 3.864 16 C -0.220 4.220 17 C -0.172 4.172 18 C 0.340 3.660 19 O -0.415 6.415 20 O -0.328 6.328 21 C -0.183 4.183 22 C -0.212 4.212 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.251 0.749 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.290 0.710 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.822 6.590 20.226 21.351 hybrid contribution 0.369 0.028 -0.302 0.478 sum -1.453 6.618 19.924 21.045 Atomic orbital electron populations 1.21850 0.94186 1.01069 1.01609 1.19394 0.96056 0.97223 0.90686 0.90794 1.20875 1.43114 0.93862 0.96150 0.95848 1.26075 0.94095 1.04490 0.94519 1.70081 1.47810 1.38294 1.03134 0.85794 0.80094 0.78723 0.78798 1.19726 1.21255 1.14123 1.21420 0.78713 0.83680 0.85050 1.90524 1.39359 1.27352 1.87152 1.46391 1.48970 1.38215 1.04199 1.19321 0.89567 0.93320 0.84189 1.22311 1.01665 0.95684 1.02353 1.21765 0.96138 1.03926 0.95355 1.23019 0.80381 0.75191 0.87408 1.90621 1.61560 1.46540 1.42753 1.84533 1.23457 1.75537 1.49312 1.22550 0.98493 0.99205 0.98015 1.23173 1.03404 0.91272 1.03330 1.23026 0.91926 1.02029 1.03512 0.92505 0.94447 0.90864 0.92553 0.74891 0.92000 0.94166 0.89867 0.87970 0.86326 0.70969 0.85950 0.86664 0.88173 0.88824 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.11 71.98 0.66 -4.03 16 2 C -0.01 -0.52 2.25 -12.29 -0.03 -0.55 16 3 H 0.07 2.97 5.18 -2.39 -0.01 2.96 16 4 C -0.50 -29.05 8.37 25.60 0.21 -28.84 16 5 H 0.02 1.60 7.60 -2.91 -0.02 1.58 16 6 C 0.00 0.25 5.47 84.66 0.46 0.72 16 7 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 8 Si 0.94 41.42 27.15 68.60 1.86 43.28 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.22 -8.02 6.49 99.48 0.65 -7.37 16 12 C 0.52 21.58 6.56 87.66 0.57 22.15 16 13 O -0.57 -28.33 12.01 -3.05 -0.04 -28.37 16 14 N -0.72 -21.44 4.72 -422.92 -1.99 -23.44 16 15 C 0.22 6.16 0.60 3.61 0.00 6.16 16 16 C -0.16 -5.06 8.07 71.98 0.58 -4.48 16 17 C -0.13 -3.81 4.73 29.85 0.14 -3.67 16 18 C 0.50 12.49 7.63 71.24 0.54 13.04 16 19 O -0.52 -14.13 12.38 21.97 0.27 -13.86 16 20 O -0.51 -10.38 13.42 -51.46 -0.69 -11.07 16 21 C -0.16 -3.49 4.49 -10.79 -0.05 -3.53 16 22 C -0.17 -2.83 9.72 30.60 0.30 -2.53 16 23 C -0.17 -2.93 9.53 30.60 0.29 -2.64 16 24 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.94 7.33 -2.39 -0.02 1.93 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.41 9.71 4.85 -92.71 -0.45 9.26 16 29 H 0.06 1.78 7.72 -2.39 -0.02 1.76 16 30 H 0.04 1.53 6.37 -2.39 -0.02 1.51 16 31 H 0.08 2.54 5.52 -2.38 -0.01 2.52 16 32 H 0.10 3.70 5.99 -2.39 -0.01 3.69 16 33 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.43 4.27 9.10 -74.05 -0.67 3.59 16 35 H 0.12 2.71 6.01 -2.39 -0.01 2.70 16 36 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.59 5.96 -2.39 -0.01 1.57 16 38 H 0.09 1.72 8.00 -2.39 -0.02 1.70 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.25 309.44 3.31 -72.95 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.09 Total: 28.88 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 3.69 Total: -8.20 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.70 Total: -83.61 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.46 Total: -53.30 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.86 Total: 43.28 kcal Total: -76.25 3.31 -72.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.573 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds