Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.50698 * 109.47353 * 239.99892 * 2 1 3 5 5 H 1.07998 * 120.00355 * 245.51218 * 4 2 1 6 6 C 1.37880 * 119.99752 * 65.51291 * 4 2 1 7 7 N 1.31510 * 119.99961 * 199.39413 * 6 4 2 8 8 Si 1.86798 * 120.00108 * 19.67800 * 6 4 2 9 9 H 1.48498 * 109.47040 * 179.72325 * 8 6 4 10 10 H 1.48502 * 109.46917 * 299.71873 * 8 6 4 11 11 H 1.48495 * 109.47395 * 59.72206 * 8 6 4 12 12 C 1.50703 * 109.47075 * 119.99889 * 2 1 3 13 13 O 1.21276 * 120.00198 * 120.00398 * 12 2 1 14 14 N 1.34778 * 119.99811 * 300.00317 * 12 2 1 15 15 C 1.46502 * 119.99931 * 184.97286 * 14 12 2 16 16 C 1.52994 * 109.47510 * 58.00354 * 15 14 12 17 17 C 1.53000 * 109.46729 * 298.00441 * 15 14 12 18 18 C 1.50695 * 109.47163 * 180.02562 * 17 15 14 19 19 O 1.20824 * 119.99929 * 359.97438 * 18 17 15 20 20 O 1.34228 * 120.00219 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47254 * 178.00934 * 15 14 12 22 22 C 1.53010 * 117.49718 * 14.66642 * 21 15 14 23 23 C 1.52999 * 117.49440 * 306.00965 * 21 15 14 24 24 H 1.08995 * 109.46810 * 175.28427 * 1 2 3 25 25 H 1.08994 * 109.47565 * 295.28662 * 1 2 3 26 26 H 1.09007 * 109.47088 * 55.28605 * 1 2 3 27 27 H 0.97006 * 119.99556 * 355.24552 * 7 6 4 28 28 H 0.97004 * 120.00208 * 4.96831 * 14 12 2 29 29 H 1.09006 * 109.46973 * 59.99775 * 16 15 14 30 30 H 1.08993 * 109.47171 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46885 * 300.00743 * 16 15 14 32 32 H 1.09006 * 109.47515 * 300.00521 * 17 15 14 33 33 H 1.08997 * 109.47061 * 60.00199 * 17 15 14 34 34 H 0.96703 * 117.00352 * 180.02562 * 20 18 17 35 35 H 1.08995 * 115.55304 * 160.33452 * 21 15 14 36 36 H 1.08999 * 117.49735 * 0.02562 * 22 21 15 37 37 H 1.09001 * 117.49443 * 145.02529 * 22 21 15 38 38 H 1.09004 * 117.49865 * 214.98001 * 23 21 15 39 39 H 1.08996 * 117.50360 * 359.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5779 -1.6375 -1.1339 6 6 1.7956 -0.1768 -2.4795 7 7 1.8782 -0.9402 -3.5471 8 14 1.3651 1.6323 -2.6560 9 1 1.1662 1.9560 -4.0916 10 1 0.1158 1.9193 -1.9062 11 1 2.4710 2.4598 -2.1107 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.2823 -0.8734 3.6488 16 6 3.8087 -0.7976 3.5784 17 6 1.8472 -2.3386 3.7191 18 6 2.4387 -2.9799 4.9478 19 8 3.1370 -2.3317 5.6908 20 8 2.1906 -4.2714 5.2163 21 6 1.7919 -0.1355 4.8962 22 6 0.5997 0.8099 4.7347 23 6 2.0044 1.3787 4.9503 24 1 -0.3633 -1.0242 -0.0845 25 1 -0.3634 0.4389 0.9291 26 1 -0.3634 0.5853 -0.8448 27 1 2.1726 -1.8607 -3.4635 28 1 1.0912 0.4944 2.5449 29 1 4.1187 0.2463 3.5283 30 1 4.2369 -1.2619 4.4667 31 1 4.1580 -1.3233 2.6898 32 1 0.7596 -2.3927 3.7692 33 1 2.1965 -2.8643 2.8305 34 1 2.5916 -4.6385 6.0160 35 1 1.8722 -0.6888 5.8318 36 1 0.1645 0.9058 3.7399 37 1 -0.1039 0.8788 5.5643 38 1 2.2243 1.8216 5.9217 39 1 2.4939 1.8491 4.0976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = -99.551349 kcal Electronic energy + Delta-G solvation = -21829.786334 eV Core-core repulsion = 18545.621211 eV Total energy + Delta-G solvation = -3284.165123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92177 -39.47681 -37.58801 -36.15517 -34.06262 -33.65677 -31.86256 -30.43756 -28.14596 -24.85183 -24.26102 -22.64403 -22.30539 -21.72063 -19.79648 -18.91501 -18.18527 -17.36725 -16.80061 -16.19424 -16.00191 -15.37930 -14.90758 -14.28655 -14.07563 -13.66431 -13.43458 -13.23768 -12.97007 -12.78933 -12.46996 -12.06994 -11.89575 -11.60448 -11.50360 -11.37643 -11.27678 -10.93252 -10.90810 -10.55356 -10.41622 -10.25101 -10.11908 -10.09516 -9.84162 -8.90144 -8.67100 -8.62138 -8.12821 -6.45922 -4.02459 2.17257 2.92323 3.32238 3.40410 3.49799 3.58923 3.69889 3.85967 4.47893 4.47979 4.70116 4.85419 4.98639 5.17029 5.26792 5.29839 5.47531 5.57251 5.70641 5.75046 5.89306 5.94539 6.01221 6.05705 6.14369 6.19285 6.27957 6.37121 6.44340 6.51317 6.68489 6.87847 7.00372 7.23134 7.80202 7.86008 8.24340 8.47875 9.04566 9.08011 9.65864 10.96047 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.005696 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.260580 B = 4914.960557 C = 5548.481294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.002 3.998 3 H 0.043 0.957 4 C -0.590 4.590 5 H 0.075 0.925 6 C 0.030 3.970 7 N -0.903 5.903 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.275 1.275 11 H -0.284 1.284 12 C 0.530 3.470 13 O -0.531 6.531 14 N -0.742 5.742 15 C 0.223 3.777 16 C -0.171 4.171 17 C -0.127 4.127 18 C 0.487 3.513 19 O -0.513 6.513 20 O -0.517 6.517 21 C -0.153 4.153 22 C -0.189 4.189 23 C -0.172 4.172 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.396 0.604 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.406 0.594 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 1.809 18.768 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 H 0.061 0.939 4 C -0.628 4.628 5 H 0.093 0.907 6 C -0.175 4.175 7 N -0.537 5.537 8 Si 0.871 3.129 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.210 1.210 12 C 0.320 3.680 13 O -0.406 6.406 14 N -0.401 5.401 15 C 0.136 3.864 16 C -0.229 4.229 17 C -0.166 4.166 18 C 0.330 3.670 19 O -0.402 6.402 20 O -0.329 6.329 21 C -0.171 4.171 22 C -0.226 4.226 23 C -0.209 4.209 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.235 0.765 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.857 2.594 17.369 17.793 hybrid contribution 0.383 -1.046 1.745 2.070 sum -2.474 1.548 19.114 19.336 Atomic orbital electron populations 1.22204 0.97122 1.01653 0.99410 1.19197 0.93604 0.96820 0.92346 0.93924 1.21909 1.40394 1.10903 0.89618 0.90660 1.25725 0.94590 1.05038 0.92135 1.70837 1.41969 1.09149 1.31746 0.84084 0.76879 0.75674 0.76281 1.21021 1.20134 1.21020 1.21456 0.78559 0.84099 0.83923 1.90485 1.37545 1.26073 1.86453 1.46724 1.50316 1.37847 1.05173 1.19268 0.94215 0.88961 0.83938 1.22400 0.93522 1.02724 1.04248 1.21877 1.02623 0.96705 0.95377 1.23468 0.77492 0.79326 0.86692 1.90631 1.36569 1.63289 1.49675 1.84586 1.71567 1.27990 1.48720 1.22738 1.02214 0.92691 0.99489 1.23073 0.91635 1.04940 1.02961 1.22945 0.98974 0.95645 1.03287 0.92914 0.95742 0.91926 0.92045 0.76523 0.92625 0.90022 0.90549 0.87803 0.85054 0.73562 0.85865 0.88470 0.88568 0.88737 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.81 37.16 0.33 -2.61 16 2 C 0.00 0.05 2.23 -92.92 -0.21 -0.16 16 3 H 0.04 0.95 6.77 -51.93 -0.35 0.59 16 4 C -0.59 -16.67 8.61 -34.44 -0.30 -16.96 16 5 H 0.08 2.41 7.02 -52.49 -0.37 2.04 16 6 C 0.03 0.86 5.32 -17.82 -0.09 0.77 16 7 N -0.90 -27.70 13.70 55.43 0.76 -26.94 16 8 Si 1.04 24.25 26.47 -169.99 -4.50 19.76 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.27 -5.71 5.62 56.52 0.32 -5.39 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.53 11.14 6.55 -10.98 -0.07 11.07 16 13 O -0.53 -12.78 11.70 5.56 0.07 -12.71 16 14 N -0.74 -11.88 4.76 -47.61 -0.23 -12.11 16 15 C 0.22 3.25 0.60 -131.82 -0.08 3.17 16 16 C -0.17 -2.74 7.97 37.15 0.30 -2.44 16 17 C -0.13 -1.82 4.84 -27.89 -0.13 -1.95 16 18 C 0.49 6.29 7.63 36.00 0.27 6.57 16 19 O -0.51 -7.23 12.38 -18.75 -0.23 -7.47 16 20 O -0.52 -5.45 13.42 -39.25 -0.53 -5.98 16 21 C -0.15 -1.85 4.49 -90.62 -0.41 -2.26 16 22 C -0.19 -1.93 9.74 -26.69 -0.26 -2.19 16 23 C -0.17 -1.85 9.60 -26.69 -0.26 -2.11 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.02 0.38 7.33 -51.93 -0.38 0.00 16 26 H 0.06 1.29 4.99 -51.92 -0.26 1.04 16 27 H 0.27 8.34 8.73 -40.82 -0.36 7.98 16 28 H 0.40 5.49 4.77 -40.82 -0.19 5.29 16 29 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 30 H 0.08 1.27 5.52 -51.93 -0.29 0.98 16 31 H 0.08 1.44 6.20 -51.93 -0.32 1.11 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.13 2.24 6.15 -51.93 -0.32 1.92 16 34 H 0.41 2.34 9.10 45.56 0.41 2.75 16 35 H 0.12 1.54 6.01 -51.93 -0.31 1.22 16 36 H 0.10 1.00 5.84 -51.93 -0.30 0.69 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.11 7.99 -51.93 -0.42 0.70 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -32.93 305.35 -5.39 -38.32 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.42 Total: 11.63 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.91 Total: -9.10 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.53 Total: -39.05 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.69 Total: -26.16 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.50 Total: 19.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.93 -5.39 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.227 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds