Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46766 * 2 1 4 4 C 1.50698 * 109.47353 * 239.99892 * 2 1 3 5 5 H 1.07998 * 120.00355 * 245.51218 * 4 2 1 6 6 C 1.37880 * 119.99752 * 65.51291 * 4 2 1 7 7 N 1.31510 * 119.99961 * 199.39413 * 6 4 2 8 8 Si 1.86798 * 120.00108 * 19.67800 * 6 4 2 9 9 H 1.48498 * 109.47040 * 179.72325 * 8 6 4 10 10 H 1.48502 * 109.46917 * 299.71873 * 8 6 4 11 11 H 1.48495 * 109.47395 * 59.72206 * 8 6 4 12 12 C 1.50703 * 109.47075 * 119.99889 * 2 1 3 13 13 O 1.21276 * 120.00198 * 120.00398 * 12 2 1 14 14 N 1.34778 * 119.99811 * 300.00317 * 12 2 1 15 15 C 1.46502 * 119.99931 * 184.97286 * 14 12 2 16 16 C 1.52994 * 109.47510 * 58.00354 * 15 14 12 17 17 C 1.53000 * 109.46729 * 298.00441 * 15 14 12 18 18 C 1.50695 * 109.47163 * 180.02562 * 17 15 14 19 19 O 1.20824 * 119.99929 * 359.97438 * 18 17 15 20 20 O 1.34228 * 120.00219 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47254 * 178.00934 * 15 14 12 22 22 C 1.53010 * 117.49718 * 14.66642 * 21 15 14 23 23 C 1.52999 * 117.49440 * 306.00965 * 21 15 14 24 24 H 1.08995 * 109.46810 * 175.28427 * 1 2 3 25 25 H 1.08994 * 109.47565 * 295.28662 * 1 2 3 26 26 H 1.09007 * 109.47088 * 55.28605 * 1 2 3 27 27 H 0.97006 * 119.99556 * 355.24552 * 7 6 4 28 28 H 0.97004 * 120.00208 * 4.96831 * 14 12 2 29 29 H 1.09006 * 109.46973 * 59.99775 * 16 15 14 30 30 H 1.08993 * 109.47171 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46885 * 300.00743 * 16 15 14 32 32 H 1.09006 * 109.47515 * 300.00521 * 17 15 14 33 33 H 1.08997 * 109.47061 * 60.00199 * 17 15 14 34 34 H 0.96703 * 117.00352 * 180.02562 * 20 18 17 35 35 H 1.08995 * 115.55304 * 160.33452 * 21 15 14 36 36 H 1.08999 * 117.49735 * 0.02562 * 22 21 15 37 37 H 1.09001 * 117.49443 * 145.02529 * 22 21 15 38 38 H 1.09004 * 117.49865 * 214.98001 * 23 21 15 39 39 H 1.08996 * 117.50360 * 359.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5779 -1.6375 -1.1339 6 6 1.7956 -0.1768 -2.4795 7 7 1.8782 -0.9402 -3.5471 8 14 1.3651 1.6323 -2.6560 9 1 1.1662 1.9560 -4.0916 10 1 0.1158 1.9193 -1.9062 11 1 2.4710 2.4598 -2.1107 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.2823 -0.8734 3.6488 16 6 3.8087 -0.7976 3.5784 17 6 1.8472 -2.3386 3.7191 18 6 2.4387 -2.9799 4.9478 19 8 3.1370 -2.3317 5.6908 20 8 2.1906 -4.2714 5.2163 21 6 1.7919 -0.1355 4.8962 22 6 0.5997 0.8099 4.7347 23 6 2.0044 1.3787 4.9503 24 1 -0.3633 -1.0242 -0.0845 25 1 -0.3634 0.4389 0.9291 26 1 -0.3634 0.5853 -0.8448 27 1 2.1726 -1.8607 -3.4635 28 1 1.0912 0.4944 2.5449 29 1 4.1187 0.2463 3.5283 30 1 4.2369 -1.2619 4.4667 31 1 4.1580 -1.3233 2.6898 32 1 0.7596 -2.3927 3.7692 33 1 2.1965 -2.8643 2.8305 34 1 2.5916 -4.6385 6.0160 35 1 1.8722 -0.6888 5.8318 36 1 0.1645 0.9058 3.7399 37 1 -0.1039 0.8788 5.5643 38 1 2.2243 1.8216 5.9217 39 1 2.4939 1.8491 4.0976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = -124.122413 kcal Electronic energy + Delta-G solvation = -21830.851815 eV Core-core repulsion = 18545.621211 eV Total energy + Delta-G solvation = -3285.230604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07604 -40.75113 -38.86436 -37.11067 -35.83677 -35.03754 -33.64023 -32.03831 -29.36548 -26.77367 -25.55635 -24.16315 -23.16793 -22.72851 -21.32844 -20.23144 -19.46046 -19.17593 -18.24186 -17.31297 -17.03278 -16.60758 -16.19278 -15.79553 -15.63229 -15.19364 -14.74446 -14.56543 -14.39682 -14.04741 -13.91261 -13.75275 -13.26521 -13.10408 -12.90138 -12.53996 -12.40281 -12.35513 -12.29061 -12.04185 -11.85231 -11.60942 -11.47572 -11.15488 -11.05363 -10.97440 -10.46026 -10.18850 -10.03685 -8.74945 -6.32037 1.14069 1.48375 1.59511 1.75534 1.81555 1.95482 2.52161 2.54875 2.86698 3.11313 3.48542 3.59867 3.93582 4.04975 4.20322 4.20814 4.34866 4.48115 4.51362 4.61970 4.66232 4.70937 4.74037 4.84087 4.87861 4.90465 5.09501 5.17183 5.23210 5.26515 5.27774 5.55793 5.57822 5.69955 5.90250 6.09114 6.65515 6.74714 6.97932 7.44109 7.52472 8.65722 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.005696 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.260580 B = 4914.960557 C = 5548.481294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 H 0.063 0.937 4 C -0.598 4.598 5 H 0.017 0.983 6 C -0.024 4.024 7 N -0.938 5.938 8 Si 1.085 2.915 9 H -0.293 1.293 10 H -0.224 1.224 11 H -0.265 1.265 12 C 0.529 3.471 13 O -0.572 6.572 14 N -0.718 5.718 15 C 0.222 3.778 16 C -0.165 4.165 17 C -0.129 4.129 18 C 0.496 3.504 19 O -0.525 6.525 20 O -0.514 6.514 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.170 4.170 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.247 0.753 28 H 0.411 0.589 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.429 0.571 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 4.480 21.514 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.081 0.919 4 C -0.636 4.636 5 H 0.036 0.964 6 C -0.221 4.221 7 N -0.574 5.574 8 Si 0.905 3.095 9 H -0.219 1.219 10 H -0.148 1.148 11 H -0.190 1.190 12 C 0.318 3.682 13 O -0.450 6.450 14 N -0.376 5.376 15 C 0.136 3.864 16 C -0.223 4.223 17 C -0.168 4.168 18 C 0.339 3.661 19 O -0.415 6.415 20 O -0.328 6.328 21 C -0.182 4.182 22 C -0.209 4.209 23 C -0.207 4.207 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.252 0.748 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.291 0.709 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.872 5.254 20.197 21.430 hybrid contribution 1.090 -2.021 0.968 2.492 sum -3.783 3.232 21.164 21.741 Atomic orbital electron populations 1.22064 0.94312 1.01179 1.02118 1.19191 0.95708 0.97006 0.90850 0.91915 1.22015 1.39618 1.09217 0.92703 0.96449 1.27429 0.93881 1.09228 0.91540 1.71000 1.44875 1.08378 1.33100 0.83622 0.79533 0.69710 0.76677 1.21947 1.14793 1.18975 1.21170 0.78328 0.83608 0.85116 1.90499 1.39431 1.27891 1.87194 1.46391 1.49555 1.37589 1.04099 1.19329 0.93139 0.89630 0.84308 1.22317 0.94956 1.02425 1.02582 1.21760 1.03709 0.96412 0.94895 1.23049 0.77092 0.79924 0.86032 1.90624 1.37005 1.63818 1.50054 1.84525 1.71507 1.26664 1.50136 1.22549 1.04655 0.93331 0.97705 1.23187 0.91407 1.02374 1.03970 1.23033 0.99475 0.94167 1.03977 0.94675 0.90538 0.91994 0.94405 0.74766 0.92135 0.89633 0.94168 0.86141 0.88357 0.70937 0.85828 0.88139 0.86411 0.87177 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.81 71.98 0.63 -4.53 16 2 C -0.01 -0.25 2.23 -12.29 -0.03 -0.28 16 3 H 0.06 2.58 6.77 -2.39 -0.02 2.57 16 4 C -0.60 -34.89 8.61 25.60 0.22 -34.67 16 5 H 0.02 1.18 7.02 -2.91 -0.02 1.16 16 6 C -0.02 -1.39 5.32 84.66 0.45 -0.94 16 7 N -0.94 -60.00 13.70 21.45 0.29 -59.71 16 8 Si 1.09 47.29 26.47 68.60 1.82 49.10 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.22 -7.99 5.62 99.48 0.56 -7.43 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 12 C 0.53 22.17 6.55 87.66 0.57 22.74 16 13 O -0.57 -28.90 11.70 -3.02 -0.04 -28.94 16 14 N -0.72 -21.59 4.76 -422.93 -2.01 -23.61 16 15 C 0.22 6.17 0.60 3.60 0.00 6.18 16 16 C -0.17 -5.27 7.97 71.98 0.57 -4.70 16 17 C -0.13 -3.62 4.84 29.85 0.14 -3.47 16 18 C 0.50 12.25 7.63 71.23 0.54 12.79 16 19 O -0.52 -14.05 12.38 21.97 0.27 -13.78 16 20 O -0.51 -10.04 13.42 -51.40 -0.69 -10.73 16 21 C -0.16 -3.47 4.49 -10.79 -0.05 -3.52 16 22 C -0.17 -2.73 9.74 30.62 0.30 -2.44 16 23 C -0.17 -3.02 9.60 30.62 0.29 -2.73 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 2.04 7.33 -2.39 -0.02 2.02 16 26 H 0.06 2.31 4.99 -2.38 -0.01 2.29 16 27 H 0.25 16.40 8.73 -92.70 -0.81 15.59 16 28 H 0.41 9.78 4.77 -92.71 -0.44 9.34 16 29 H 0.06 1.81 7.72 -2.38 -0.02 1.79 16 30 H 0.09 2.65 5.52 -2.39 -0.01 2.63 16 31 H 0.04 1.57 6.20 -2.39 -0.01 1.55 16 32 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 33 H 0.10 3.50 6.15 -2.39 -0.01 3.48 16 34 H 0.43 4.04 9.10 -74.06 -0.67 3.36 16 35 H 0.12 2.71 6.01 -2.39 -0.01 2.69 16 36 H 0.10 1.53 5.84 -2.39 -0.01 1.52 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.09 1.77 7.99 -2.39 -0.02 1.75 16 Total: -1.00 -77.14 305.35 3.10 -74.04 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.20 Total: 29.18 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.66 Total: -15.56 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.72 Total: -83.32 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -0.45 Total: -53.45 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.82 Total: 49.10 kcal Total: -77.14 3.10 -74.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.078 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds