Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47043 * 2 1 4 4 C 1.50692 * 109.46970 * 119.99980 * 2 1 3 5 5 H 1.08001 * 119.99698 * 120.00309 * 4 2 1 6 6 C 1.37877 * 120.00399 * 299.99743 * 4 2 1 7 7 N 1.31521 * 119.99649 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47207 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.46900 * 300.00016 * 8 6 4 11 11 H 1.48499 * 109.47063 * 59.99870 * 8 6 4 12 12 C 1.50701 * 109.46934 * 240.00291 * 2 1 3 13 13 O 1.21282 * 119.99756 * 240.00107 * 12 2 1 14 14 N 1.34772 * 120.00168 * 60.00056 * 12 2 1 15 15 C 1.46502 * 119.99869 * 174.76563 * 14 12 2 16 16 C 1.52998 * 109.47627 * 65.07687 * 15 14 12 17 17 C 1.53001 * 109.46790 * 305.07595 * 15 14 12 18 18 C 1.50703 * 109.47172 * 180.02562 * 17 15 14 19 19 O 1.20822 * 119.99987 * 0.02562 * 18 17 15 20 20 O 1.34233 * 119.99757 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47180 * 185.08071 * 15 14 12 22 22 C 1.53000 * 117.50013 * 14.73198 * 21 15 14 23 23 C 1.53006 * 117.50085 * 306.07208 * 21 15 14 24 24 H 1.08997 * 109.47136 * 300.00062 * 1 2 3 25 25 H 1.09007 * 109.47073 * 59.99920 * 1 2 3 26 26 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99693 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00181 * 354.75125 * 14 12 2 29 29 H 1.08999 * 109.47019 * 60.00040 * 16 15 14 30 30 H 1.08994 * 109.47382 * 180.02562 * 16 15 14 31 31 H 1.09004 * 109.47191 * 300.00136 * 16 15 14 32 32 H 1.09001 * 109.47719 * 300.00284 * 17 15 14 33 33 H 1.09004 * 109.47067 * 60.00453 * 17 15 14 34 34 H 0.96703 * 116.99612 * 179.97438 * 20 18 17 35 35 H 1.09002 * 115.55416 * 160.40085 * 21 15 14 36 36 H 1.08998 * 117.49671 * 0.02562 * 22 21 15 37 37 H 1.08998 * 117.50321 * 145.02354 * 22 21 15 38 38 H 1.08993 * 117.50057 * 214.98200 * 23 21 15 39 39 H 1.09003 * 117.49404 * 0.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 1.8269 -0.4199 5.2203 10 1 1.8279 -2.5198 4.0081 11 1 3.8075 -1.1190 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7068 -0.2499 -2.4546 15 6 2.2868 -0.8697 -3.6485 16 6 1.7963 -2.3144 -3.7628 17 6 3.8129 -0.8564 -3.5397 18 6 4.4097 -1.4935 -4.7682 19 8 3.6885 -1.9145 -5.6413 20 8 5.7426 -1.5932 -4.8922 21 6 1.8573 -0.0856 -4.8901 22 6 1.2561 1.3047 -4.6746 23 6 0.3586 0.1398 -5.0998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1613 3.4844 28 1 1.0882 0.4918 -2.5450 29 1 0.7091 -2.3239 -3.8403 30 1 2.2282 -2.7757 -4.6508 31 1 2.1023 -2.8731 -2.8782 32 1 4.1625 0.1728 -3.4584 33 1 4.1190 -1.4151 -2.6552 34 1 6.0785 -2.0098 -5.6977 35 1 2.4726 -0.2358 -5.7772 36 1 1.1669 1.6609 -3.6483 37 1 1.4754 2.0690 -5.4201 38 1 -0.0120 0.1383 -6.1248 39 1 -0.3214 -0.2701 -4.3530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -101.398708 kcal Electronic energy + Delta-G solvation = -21769.853366 eV Core-core repulsion = 18485.608135 eV Total energy + Delta-G solvation = -3284.245231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84336 -39.36879 -37.47284 -36.09804 -33.99453 -33.56638 -31.65068 -29.90148 -28.07475 -25.15010 -24.11163 -22.67187 -22.24993 -21.66760 -19.90518 -18.79583 -18.13485 -16.78121 -16.22828 -16.08846 -15.91341 -15.18342 -14.73128 -14.46106 -14.11139 -13.65621 -13.31878 -13.10209 -12.91486 -12.53569 -12.43660 -11.97652 -11.55543 -11.44721 -11.39155 -11.10926 -10.99985 -10.87047 -10.70996 -10.66558 -10.32794 -10.23602 -10.15805 -10.03975 -9.94665 -8.99214 -8.56973 -8.47713 -8.28710 -6.03290 -4.06521 2.23039 2.98821 3.36102 3.38840 3.44097 3.65862 3.79933 3.97477 4.47336 4.57780 4.77366 4.94742 5.07755 5.25525 5.30178 5.36474 5.57964 5.65666 5.82091 5.84985 5.97979 6.08931 6.11464 6.12972 6.30780 6.33777 6.51245 6.60129 6.73666 6.81398 6.92348 7.11823 7.46806 7.75169 7.91372 7.98757 8.13913 8.42908 9.02052 9.20551 9.59083 11.04221 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.005504 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.689408 B = 5085.704899 C = 5853.811033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.541 6.541 14 N -0.741 5.741 15 C 0.223 3.777 16 C -0.169 4.169 17 C -0.129 4.129 18 C 0.487 3.513 19 O -0.513 6.513 20 O -0.517 6.517 21 C -0.153 4.153 22 C -0.188 4.188 23 C -0.173 4.173 24 H 0.093 0.907 25 H 0.010 0.990 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.398 0.602 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.406 0.594 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 0.557 -15.461 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.417 6.417 14 N -0.398 5.398 15 C 0.136 3.864 16 C -0.227 4.227 17 C -0.167 4.167 18 C 0.331 3.669 19 O -0.402 6.402 20 O -0.329 6.329 21 C -0.172 4.172 22 C -0.225 4.225 23 C -0.210 4.210 24 H 0.112 0.888 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.236 0.764 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.152 0.848 34 H 0.264 0.736 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.508 0.040 -15.081 15.288 hybrid contribution 0.186 -0.245 0.209 0.372 sum 2.694 -0.205 -14.872 15.115 Atomic orbital electron populations 1.21753 0.96648 0.99840 1.00862 1.18880 0.94119 0.96808 0.89399 0.93003 1.21094 1.31030 1.12822 0.88958 0.90765 1.24948 0.95118 0.95062 0.99107 1.69863 1.37046 1.23084 1.23626 0.86514 0.79261 0.79710 0.81688 1.21421 1.20242 1.20209 1.21977 0.78422 0.83896 0.84393 1.90455 1.38479 1.26161 1.86649 1.46680 1.49668 1.38331 1.05144 1.19249 0.89531 0.93649 0.84010 1.22395 1.01274 0.95126 1.03857 1.21862 0.95909 1.03320 0.95633 1.23475 0.79715 0.75550 0.88186 1.90628 1.60949 1.46115 1.42533 1.84591 1.24935 1.75563 1.47768 1.22733 0.97151 0.97703 0.99570 1.23084 1.05015 0.91711 1.02720 1.22942 0.93143 1.02382 1.02533 0.88824 0.97094 0.94948 0.92927 0.76421 0.92751 0.90252 0.90762 0.87748 0.84787 0.73633 0.85975 0.88258 0.88671 0.88818 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.86 37.16 0.33 -2.66 16 2 C 0.03 0.70 2.65 -92.92 -0.25 0.45 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -13.85 8.37 -34.44 -0.29 -14.14 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.84 11.32 55.43 0.63 -24.21 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.52 11.21 6.56 -10.99 -0.07 11.14 16 13 O -0.54 -12.90 11.70 5.56 0.07 -12.83 16 14 N -0.74 -12.39 4.73 -47.61 -0.23 -12.62 16 15 C 0.22 3.35 0.60 -131.82 -0.08 3.27 16 16 C -0.17 -2.72 8.07 37.16 0.30 -2.42 16 17 C -0.13 -1.90 4.73 -27.88 -0.13 -2.03 16 18 C 0.49 6.45 7.63 36.01 0.27 6.72 16 19 O -0.51 -7.39 12.38 -18.75 -0.23 -7.62 16 20 O -0.52 -5.58 13.42 -39.27 -0.53 -6.11 16 21 C -0.15 -1.95 4.49 -90.62 -0.41 -2.35 16 22 C -0.19 -2.09 9.72 -26.69 -0.26 -2.35 16 23 C -0.17 -1.98 9.53 -26.69 -0.25 -2.23 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 25 H 0.01 0.19 7.46 -51.92 -0.39 -0.19 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 28 H 0.40 6.00 4.92 -40.82 -0.20 5.80 16 29 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 30 H 0.08 1.25 5.52 -51.93 -0.29 0.96 16 31 H 0.07 1.39 6.37 -51.93 -0.33 1.05 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.13 2.33 5.99 -51.93 -0.31 2.02 16 34 H 0.41 2.42 9.10 45.56 0.41 2.84 16 35 H 0.12 1.59 6.01 -51.93 -0.31 1.28 16 36 H 0.10 1.14 5.96 -51.93 -0.31 0.83 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.17 8.00 -51.93 -0.42 0.75 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -30.69 309.82 -6.03 -36.72 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.46 Total: 10.52 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.93 Total: -5.10 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.40 Total: -36.83 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.69 Total: -26.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.69 -6.03 -36.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.678 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds