Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47043 * 2 1 4 4 C 1.50692 * 109.46970 * 119.99980 * 2 1 3 5 5 H 1.08001 * 119.99698 * 120.00309 * 4 2 1 6 6 C 1.37877 * 120.00399 * 299.99743 * 4 2 1 7 7 N 1.31521 * 119.99649 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47207 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.46900 * 300.00016 * 8 6 4 11 11 H 1.48499 * 109.47063 * 59.99870 * 8 6 4 12 12 C 1.50701 * 109.46934 * 240.00291 * 2 1 3 13 13 O 1.21282 * 119.99756 * 240.00107 * 12 2 1 14 14 N 1.34772 * 120.00168 * 60.00056 * 12 2 1 15 15 C 1.46502 * 119.99869 * 174.76563 * 14 12 2 16 16 C 1.52998 * 109.47627 * 65.07687 * 15 14 12 17 17 C 1.53001 * 109.46790 * 305.07595 * 15 14 12 18 18 C 1.50703 * 109.47172 * 180.02562 * 17 15 14 19 19 O 1.20822 * 119.99987 * 0.02562 * 18 17 15 20 20 O 1.34233 * 119.99757 * 180.02562 * 18 17 15 21 21 C 1.52994 * 109.47180 * 185.08071 * 15 14 12 22 22 C 1.53000 * 117.50013 * 14.73198 * 21 15 14 23 23 C 1.53006 * 117.50085 * 306.07208 * 21 15 14 24 24 H 1.08997 * 109.47136 * 300.00062 * 1 2 3 25 25 H 1.09007 * 109.47073 * 59.99920 * 1 2 3 26 26 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99693 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00181 * 354.75125 * 14 12 2 29 29 H 1.08999 * 109.47019 * 60.00040 * 16 15 14 30 30 H 1.08994 * 109.47382 * 180.02562 * 16 15 14 31 31 H 1.09004 * 109.47191 * 300.00136 * 16 15 14 32 32 H 1.09001 * 109.47719 * 300.00284 * 17 15 14 33 33 H 1.09004 * 109.47067 * 60.00453 * 17 15 14 34 34 H 0.96703 * 116.99612 * 179.97438 * 20 18 17 35 35 H 1.09002 * 115.55416 * 160.40085 * 21 15 14 36 36 H 1.08998 * 117.49671 * 0.02562 * 22 21 15 37 37 H 1.08998 * 117.50321 * 145.02354 * 22 21 15 38 38 H 1.08993 * 117.50057 * 214.98200 * 23 21 15 39 39 H 1.09003 * 117.49404 * 0.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 1.8269 -0.4199 5.2203 10 1 1.8279 -2.5198 4.0081 11 1 3.8075 -1.1190 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7068 -0.2499 -2.4546 15 6 2.2868 -0.8697 -3.6485 16 6 1.7963 -2.3144 -3.7628 17 6 3.8129 -0.8564 -3.5397 18 6 4.4097 -1.4935 -4.7682 19 8 3.6885 -1.9145 -5.6413 20 8 5.7426 -1.5932 -4.8922 21 6 1.8573 -0.0856 -4.8901 22 6 1.2561 1.3047 -4.6746 23 6 0.3586 0.1398 -5.0998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7088 1.1613 3.4844 28 1 1.0882 0.4918 -2.5450 29 1 0.7091 -2.3239 -3.8403 30 1 2.2282 -2.7757 -4.6508 31 1 2.1023 -2.8731 -2.8782 32 1 4.1625 0.1728 -3.4584 33 1 4.1190 -1.4151 -2.6552 34 1 6.0785 -2.0098 -5.6977 35 1 2.4726 -0.2358 -5.7772 36 1 1.1669 1.6609 -3.6483 37 1 1.4754 2.0690 -5.4201 38 1 -0.0120 0.1383 -6.1248 39 1 -0.3214 -0.2701 -4.3530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -121.733923 kcal Electronic energy + Delta-G solvation = -21770.735167 eV Core-core repulsion = 18485.608135 eV Total energy + Delta-G solvation = -3285.127032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.02215 -40.67045 -38.80173 -37.07304 -35.80906 -34.97535 -33.29799 -31.63333 -29.31739 -27.18187 -25.41904 -24.27097 -23.15933 -22.70574 -21.43228 -20.15052 -19.15465 -18.26529 -18.20350 -17.23279 -16.98322 -16.66056 -16.23314 -15.88807 -15.73606 -15.01734 -14.66315 -14.57994 -14.32971 -14.00738 -13.71409 -13.48544 -13.02414 -12.90207 -12.72603 -12.54572 -12.50373 -12.44765 -12.30419 -12.10401 -11.96891 -11.93052 -11.44484 -11.12808 -11.03588 -11.01622 -10.53590 -10.11423 -9.95789 -8.12349 -6.22051 1.17895 1.43029 1.43912 1.52304 1.87185 2.03048 2.42477 2.63602 2.88533 3.17643 3.52762 3.62898 3.96469 4.08247 4.22533 4.32781 4.41828 4.54882 4.67097 4.73633 4.75880 4.78757 4.88047 4.93267 4.95973 5.04816 5.10926 5.23810 5.27339 5.32022 5.52634 5.62337 5.72697 5.79981 5.97063 6.24464 6.76060 6.89527 7.01824 7.43427 7.58071 8.93158 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.005504 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.689408 B = 5085.704899 C = 5853.811033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.570 6.570 14 N -0.721 5.721 15 C 0.221 3.779 16 C -0.161 4.161 17 C -0.131 4.131 18 C 0.497 3.503 19 O -0.525 6.525 20 O -0.514 6.514 21 C -0.161 4.161 22 C -0.177 4.177 23 C -0.169 4.169 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.264 0.736 28 H 0.408 0.592 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.429 0.571 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 1.284 -16.920 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.003 3.997 3 H 0.059 0.941 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.316 3.684 13 O -0.449 6.449 14 N -0.378 5.378 15 C 0.135 3.865 16 C -0.219 4.219 17 C -0.170 4.170 18 C 0.341 3.659 19 O -0.415 6.415 20 O -0.327 6.327 21 C -0.180 4.180 22 C -0.214 4.214 23 C -0.206 4.206 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.248 0.752 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.291 0.709 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.400 0.787 -16.581 16.772 hybrid contribution 0.263 -0.472 0.608 0.814 sum 2.664 0.315 -15.973 16.197 Atomic orbital electron populations 1.21570 0.95435 0.99333 1.01569 1.18810 0.95098 0.96007 0.89835 0.94051 1.21267 1.31430 1.12696 0.90985 0.93025 1.25570 0.95280 0.95746 1.01358 1.69944 1.37265 1.23618 1.24242 0.85693 0.78696 0.78669 0.79053 1.20190 1.20367 1.20133 1.21437 0.78314 0.83463 0.85192 1.90456 1.39795 1.27368 1.87251 1.46398 1.49018 1.37964 1.04391 1.19349 0.89784 0.93329 0.84084 1.22307 1.01497 0.95604 1.02519 1.21740 0.95904 1.03827 0.95488 1.22995 0.80395 0.75179 0.87357 1.90622 1.61468 1.46608 1.42814 1.84527 1.23407 1.75492 1.49321 1.22571 0.98326 0.98926 0.98145 1.23164 1.03688 0.91427 1.03132 1.23027 0.92022 1.02060 1.03459 0.91140 0.93258 0.95921 0.92711 0.75206 0.92341 0.89704 0.93842 0.86569 0.87667 0.70948 0.85713 0.88675 0.86551 0.87030 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.86 71.98 0.64 -4.78 16 2 C 0.02 1.15 2.65 -12.29 -0.03 1.12 16 3 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.53 -29.72 8.37 25.60 0.21 -29.51 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.60 11.32 21.45 0.24 -50.36 16 8 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.53 22.83 6.56 87.66 0.57 23.41 16 13 O -0.57 -28.02 11.70 -3.03 -0.04 -28.06 16 14 N -0.72 -23.58 4.73 -422.93 -2.00 -25.58 16 15 C 0.22 6.43 0.60 3.60 0.00 6.43 16 16 C -0.16 -5.16 8.07 71.98 0.58 -4.58 16 17 C -0.13 -3.80 4.73 29.85 0.14 -3.66 16 18 C 0.50 12.49 7.63 71.24 0.54 13.03 16 19 O -0.52 -14.22 12.38 21.98 0.27 -13.95 16 20 O -0.51 -10.13 13.42 -51.45 -0.69 -10.82 16 21 C -0.16 -3.72 4.49 -10.79 -0.05 -3.77 16 22 C -0.18 -3.38 9.72 30.62 0.30 -3.08 16 23 C -0.17 -3.36 9.53 30.62 0.29 -3.07 16 24 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 25 H 0.05 1.77 7.46 -2.38 -0.02 1.75 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.41 11.61 4.92 -92.71 -0.46 11.15 16 29 H 0.06 1.77 7.72 -2.39 -0.02 1.75 16 30 H 0.08 2.61 5.52 -2.39 -0.01 2.60 16 31 H 0.04 1.65 6.37 -2.38 -0.02 1.64 16 32 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.11 3.75 5.99 -2.38 -0.01 3.74 16 34 H 0.43 4.07 9.10 -74.06 -0.67 3.40 16 35 H 0.13 2.91 6.01 -2.39 -0.01 2.90 16 36 H 0.10 1.91 5.96 -2.39 -0.01 1.90 16 37 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.94 8.00 -2.39 -0.02 1.92 16 Total: -1.00 -66.37 309.82 3.43 -62.94 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.04 Total: 26.17 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.65 Total: -6.92 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.76 Total: -75.94 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.45 Total: -52.83 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.37 3.43 -62.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.796 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds