Wall clock time and date at job start Mon Mar 30 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47441 * 275.00125 * 15 14 12 17 17 C 1.53005 * 109.47123 * 300.00042 * 16 15 14 18 18 C 1.52997 * 109.46848 * 300.00101 * 17 16 15 19 19 C 1.50701 * 109.47020 * 180.02562 * 18 17 16 20 20 O 1.20836 * 119.99751 * 239.99909 * 19 18 17 21 21 O 1.34231 * 120.00608 * 59.99123 * 19 18 17 22 22 C 1.52999 * 109.47571 * 59.99744 * 18 17 16 23 23 C 1.52997 * 109.47364 * 155.00135 * 15 14 12 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.08995 * 109.47049 * 34.99932 * 15 14 12 30 30 H 1.09003 * 109.46569 * 59.99623 * 16 15 14 31 31 H 1.08995 * 109.47355 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47156 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.47027 * 59.99786 * 17 16 15 34 34 H 1.09005 * 109.47049 * 299.99671 * 18 17 16 35 35 H 0.96695 * 117.00297 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47060 * 179.97438 * 22 18 17 37 37 H 1.08995 * 109.47004 * 59.99987 * 22 18 17 38 38 H 1.08995 * 109.47349 * 180.02562 * 23 15 14 39 39 H 1.09000 * 109.47142 * 300.00132 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 3.5979 -0.4340 -3.9944 17 6 3.5460 1.0719 -4.2599 18 6 2.6019 1.3509 -5.4312 19 6 2.5512 2.8341 -5.6931 20 8 1.5009 3.4262 -5.6130 21 8 3.6727 3.4976 -6.0153 22 6 1.1995 0.8449 -5.0876 23 6 1.2515 -0.6610 -4.8221 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 2.2325 -2.0127 -3.4616 30 1 4.2704 -0.6328 -3.1599 31 1 3.9617 -0.9478 -4.8841 32 1 4.5452 1.4325 -4.5043 33 1 3.1823 1.5855 -3.3699 34 1 2.9656 0.8374 -6.3212 35 1 3.5903 4.4478 -6.1746 36 1 0.5269 1.0441 -5.9219 37 1 0.8359 1.3584 -4.1977 38 1 1.6149 -1.1748 -5.7120 39 1 0.2524 -1.0214 -4.5774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:08 Heat of formation + Delta-G solvation = -155.988126 kcal Electronic energy + Delta-G solvation = -21345.907176 eV Core-core repulsion = 18059.294771 eV Total energy + Delta-G solvation = -3286.612405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78377 -39.37066 -37.48131 -36.25785 -33.69846 -33.28240 -30.91464 -30.82556 -29.35979 -25.09898 -24.57325 -22.78827 -22.73163 -21.06010 -19.90405 -18.78082 -18.16944 -16.91331 -16.51586 -16.10573 -15.76117 -15.13811 -14.93513 -14.50617 -13.99792 -13.90219 -13.54016 -13.08008 -12.84359 -12.57664 -12.32823 -12.27348 -12.21161 -11.68557 -11.52451 -11.25041 -10.99581 -10.97484 -10.75455 -10.67379 -10.64164 -10.42307 -10.21125 -10.15022 -9.91886 -8.94921 -8.57008 -8.38209 -8.27848 -5.99767 -4.02840 2.04673 2.86604 3.38134 3.40555 3.45928 3.77754 3.96253 4.43431 4.50124 4.56918 4.73752 5.00438 5.07450 5.20649 5.33147 5.35315 5.37355 5.39491 5.58267 5.72879 5.90402 6.00631 6.05501 6.11220 6.19731 6.30560 6.36794 6.42955 6.66179 6.86674 6.97241 7.18294 7.51723 7.72515 7.79486 8.02793 8.19653 8.50093 9.05848 9.30241 9.62619 11.07791 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.004533 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.370747 B = 6175.329437 C = 6442.202417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.741 5.741 15 C 0.141 3.859 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.077 4.077 19 C 0.482 3.518 20 O -0.515 6.515 21 O -0.517 6.517 22 C -0.106 4.106 23 C -0.124 4.124 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 2.929 -18.298 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.396 5.396 15 C 0.035 3.965 16 C -0.166 4.166 17 C -0.147 4.147 18 C -0.096 4.096 19 C 0.324 3.676 20 O -0.403 6.403 21 O -0.328 6.328 22 C -0.144 4.144 23 C -0.162 4.162 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.229 0.771 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.425 2.049 -17.957 18.235 hybrid contribution -0.042 0.740 0.615 0.963 sum 2.382 2.789 -17.343 17.726 Atomic orbital electron populations 1.21735 0.96629 0.99742 1.00876 1.18862 0.94102 0.96774 0.89548 0.93197 1.21104 1.30928 1.12760 0.89029 0.90871 1.24956 0.95160 0.95073 0.99095 1.69868 1.37136 1.23094 1.23570 0.86516 0.79245 0.79714 0.81700 1.21425 1.20227 1.20241 1.21936 0.78335 0.84150 0.84568 1.90517 1.38054 1.26928 1.86806 1.46427 1.55205 1.32535 1.05403 1.20798 0.92389 0.98166 0.85097 1.21923 0.98180 0.94422 1.02105 1.21505 0.98651 0.97981 0.96551 1.21130 0.99513 0.87163 1.01808 1.23670 0.80747 0.91304 0.71870 1.90729 1.31747 1.69985 1.47792 1.84548 1.38564 1.28347 1.81378 1.21461 0.93881 0.96053 1.02991 1.21822 1.00707 0.95377 0.98297 0.95035 0.88931 0.96980 0.92959 0.77116 0.89567 0.90445 0.91292 0.90740 0.90824 0.87396 0.73377 0.90822 0.90684 0.90592 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.70 2.64 -92.93 -0.25 0.46 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 11.60 7.11 -10.99 -0.08 11.52 16 13 O -0.55 -13.91 15.12 5.56 0.08 -13.82 16 14 N -0.74 -12.36 4.12 -53.81 -0.22 -12.58 16 15 C 0.14 1.91 2.78 -67.93 -0.19 1.72 16 16 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 17 C -0.11 -1.22 4.98 -26.73 -0.13 -1.35 16 18 C -0.08 -0.75 2.63 -91.77 -0.24 -0.99 16 19 C 0.48 5.27 7.63 36.01 0.27 5.54 16 20 O -0.51 -7.19 16.74 -18.76 -0.31 -7.51 16 21 O -0.52 -4.45 13.33 -39.26 -0.52 -4.98 16 22 C -0.11 -1.09 4.32 -26.73 -0.12 -1.20 16 23 C -0.12 -1.25 5.61 -26.73 -0.15 -1.40 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 6.02 6.29 -40.82 -0.26 5.76 16 29 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.41 1.88 9.10 45.56 0.41 2.30 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.89 6.46 -51.93 -0.34 0.55 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -33.25 316.27 -6.65 -39.90 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.96 Total: 5.17 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.08 Total: -3.12 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.41 Total: -37.35 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.75 Total: -26.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.25 -6.65 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.092 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds