Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47441 * 275.00125 * 15 14 12 17 17 C 1.53005 * 109.47123 * 300.00042 * 16 15 14 18 18 C 1.52997 * 109.46848 * 300.00101 * 17 16 15 19 19 C 1.50701 * 109.47020 * 180.02562 * 18 17 16 20 20 O 1.20836 * 119.99751 * 239.99909 * 19 18 17 21 21 O 1.34231 * 120.00608 * 59.99123 * 19 18 17 22 22 C 1.52999 * 109.47571 * 59.99744 * 18 17 16 23 23 C 1.52997 * 109.47364 * 155.00135 * 15 14 12 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.08995 * 109.47049 * 34.99932 * 15 14 12 30 30 H 1.09003 * 109.46569 * 59.99623 * 16 15 14 31 31 H 1.08995 * 109.47355 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47156 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.47027 * 59.99786 * 17 16 15 34 34 H 1.09005 * 109.47049 * 299.99671 * 18 17 16 35 35 H 0.96695 * 117.00297 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47060 * 179.97438 * 22 18 17 37 37 H 1.08995 * 109.47004 * 59.99987 * 22 18 17 38 38 H 1.08995 * 109.47349 * 180.02562 * 23 15 14 39 39 H 1.09000 * 109.47142 * 300.00132 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 3.5979 -0.4340 -3.9944 17 6 3.5460 1.0719 -4.2599 18 6 2.6019 1.3509 -5.4312 19 6 2.5512 2.8341 -5.6931 20 8 1.5009 3.4262 -5.6130 21 8 3.6727 3.4976 -6.0153 22 6 1.1995 0.8449 -5.0876 23 6 1.2515 -0.6610 -4.8221 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 2.2325 -2.0127 -3.4616 30 1 4.2704 -0.6328 -3.1599 31 1 3.9617 -0.9478 -4.8841 32 1 4.5452 1.4325 -4.5043 33 1 3.1823 1.5855 -3.3699 34 1 2.9656 0.8374 -6.3212 35 1 3.5903 4.4478 -6.1746 36 1 0.5269 1.0441 -5.9219 37 1 0.8359 1.3584 -4.1977 38 1 1.6149 -1.1748 -5.7120 39 1 0.2524 -1.0214 -4.5774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = -179.003767 kcal Electronic energy + Delta-G solvation = -21346.905209 eV Core-core repulsion = 18059.294771 eV Total energy + Delta-G solvation = -3287.610439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69904 -40.72368 -38.79194 -37.07830 -35.74819 -34.63943 -32.63559 -31.79390 -30.72363 -27.19523 -25.60218 -24.42790 -23.67088 -22.01296 -21.39634 -20.00729 -18.98422 -18.31130 -17.91977 -17.72669 -16.93339 -16.61768 -16.25039 -16.06520 -15.28727 -15.10873 -14.72873 -14.62373 -14.30913 -13.78675 -13.47907 -13.37079 -13.27854 -13.15459 -12.95192 -12.67022 -12.58922 -12.51074 -12.22650 -12.11120 -11.99689 -11.96805 -11.55797 -11.33365 -11.11798 -11.03550 -10.58417 -10.24492 -9.84037 -8.14167 -6.24745 1.21937 1.41131 1.42799 1.51341 1.99803 2.16135 2.38761 2.60411 3.15316 3.60470 3.70645 3.88703 4.07158 4.16267 4.34993 4.41435 4.49409 4.51535 4.58815 4.71937 4.74987 4.88589 4.94174 5.01671 5.08927 5.10317 5.18138 5.23584 5.35028 5.38245 5.50349 5.65024 5.71668 5.80641 5.95874 6.22761 6.76686 6.89274 7.01808 7.41411 7.61328 8.91499 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.004533 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.370747 B = 6175.329437 C = 6442.202417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.021 3.979 3 H 0.035 0.965 4 C -0.527 4.527 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.585 6.585 14 N -0.720 5.720 15 C 0.133 3.867 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.072 4.072 19 C 0.485 3.515 20 O -0.551 6.551 21 O -0.512 6.512 22 C -0.105 4.105 23 C -0.111 4.111 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.403 0.597 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.142 0.858 35 H 0.425 0.575 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 2.952 -20.285 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.000 4.000 3 H 0.052 0.948 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.029 3.971 16 C -0.161 4.161 17 C -0.141 4.141 18 C -0.090 4.090 19 C 0.329 3.671 20 O -0.442 6.442 21 O -0.325 6.325 22 C -0.143 4.143 23 C -0.149 4.149 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.160 0.840 35 H 0.287 0.713 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.517 2.115 -19.991 20.260 hybrid contribution -0.030 0.796 1.171 1.416 sum 2.487 2.911 -18.821 19.206 Atomic orbital electron populations 1.21540 0.95293 0.99369 1.01447 1.18804 0.95207 0.95739 0.90247 0.94763 1.21263 1.31496 1.12682 0.91090 0.93217 1.25629 0.95230 0.95754 1.01518 1.69958 1.37316 1.23669 1.24292 0.85640 0.78654 0.78742 0.78771 1.20046 1.20069 1.20156 1.21384 0.78193 0.83584 0.85659 1.90492 1.39901 1.28560 1.87536 1.46196 1.53980 1.32279 1.04915 1.21110 0.94369 0.96826 0.84797 1.21863 0.96380 0.95552 1.02271 1.21410 0.99692 0.96771 0.96235 1.21140 0.98749 0.86893 1.02266 1.23843 0.80535 0.91722 0.70950 1.90724 1.33098 1.70766 1.49563 1.84507 1.37427 1.29919 1.80683 1.21440 0.94505 0.95740 1.02573 1.21773 0.99835 0.95633 0.97627 0.95711 0.91288 0.93365 0.92675 0.76084 0.91343 0.93925 0.87742 0.89573 0.93535 0.84031 0.71347 0.89563 0.92775 0.87151 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.87 71.98 0.64 -4.89 16 2 C 0.02 1.09 2.64 -12.29 -0.03 1.06 16 3 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.53 -30.92 8.37 25.60 0.21 -30.71 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -52.24 11.32 21.45 0.24 -51.99 16 8 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.52 23.89 7.11 87.66 0.62 24.51 16 13 O -0.59 -30.78 15.12 -3.03 -0.05 -30.83 16 14 N -0.72 -23.93 4.12 -442.55 -1.83 -25.75 16 15 C 0.13 3.43 2.78 44.99 0.13 3.55 16 16 C -0.12 -2.79 5.60 30.60 0.17 -2.62 16 17 C -0.10 -2.11 4.98 30.59 0.15 -1.96 16 18 C -0.07 -1.17 2.63 -11.54 -0.03 -1.20 16 19 C 0.49 9.49 7.63 71.24 0.54 10.04 16 20 O -0.55 -14.58 16.74 21.93 0.37 -14.21 16 21 O -0.51 -7.48 13.33 -51.43 -0.69 -8.17 16 22 C -0.10 -1.86 4.32 30.59 0.13 -1.72 16 23 C -0.11 -1.88 5.61 30.59 0.17 -1.71 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 26 H 0.05 1.84 7.57 -2.38 -0.02 1.82 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.40 12.09 6.29 -92.70 -0.58 11.51 16 29 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.05 1.20 7.60 -2.38 -0.02 1.18 16 34 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.43 2.94 9.10 -74.06 -0.67 2.26 16 36 H 0.09 1.37 8.10 -2.39 -0.02 1.36 16 37 H 0.05 1.19 6.46 -2.39 -0.02 1.18 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.09 316.27 3.05 -71.03 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.19 Total: 16.63 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 3.16 Total: -4.20 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.58 Total: -77.75 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.36 Total: -53.21 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.09 3.05 -71.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.969 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds