Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47113 * 120.00231 * 2 1 3 5 5 H 1.08007 * 119.99873 * 119.99282 * 4 2 1 6 6 C 1.37875 * 120.00195 * 299.99839 * 4 2 1 7 7 N 1.31508 * 119.99935 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46958 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47177 * 119.99809 * 8 6 4 11 11 H 1.48499 * 109.47340 * 240.00169 * 8 6 4 12 12 C 1.50700 * 109.46607 * 240.00007 * 2 1 3 13 13 O 1.21276 * 120.00499 * 334.95461 * 12 2 1 14 14 N 1.34784 * 119.99685 * 154.95658 * 12 2 1 15 15 C 1.46921 * 120.62844 * 4.90047 * 14 12 2 16 16 C 1.53626 * 108.54480 * 126.37031 * 15 14 12 17 17 C 1.53042 * 109.24297 * 54.85094 * 16 15 14 18 18 H 1.09004 * 109.44670 * 58.52830 * 17 16 15 19 19 C 1.50696 * 109.46119 * 178.49238 * 17 16 15 20 20 O 1.20825 * 119.99820 * 120.06944 * 19 17 16 21 21 O 1.34231 * 120.00067 * 300.07039 * 19 17 16 22 22 C 1.53044 * 109.54069 * 298.51842 * 17 16 15 23 23 H 1.08994 * 109.52676 * 181.33172 * 22 17 16 24 24 C 1.53011 * 109.49225 * 301.41195 * 22 17 16 25 25 C 1.46921 * 120.62894 * 185.17744 * 14 12 2 26 26 H 1.09006 * 109.46493 * 295.10040 * 1 2 3 27 27 H 1.08994 * 109.46873 * 55.09876 * 1 2 3 28 28 H 1.09001 * 109.47161 * 175.10494 * 1 2 3 29 29 H 0.97002 * 120.00025 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.58480 * 246.20105 * 15 14 12 31 31 H 1.08997 * 109.59045 * 6.62360 * 15 14 12 32 32 H 1.09001 * 109.63257 * 294.86812 * 16 15 14 33 33 H 1.09000 * 109.46200 * 174.74110 * 16 15 14 34 34 H 0.96698 * 116.99509 * 179.97438 * 21 19 17 35 35 H 1.08996 * 109.46551 * 179.83671 * 24 22 17 36 36 H 1.08992 * 109.46845 * 299.83477 * 24 22 17 37 37 H 1.08994 * 109.47172 * 59.83972 * 24 22 17 38 38 H 1.09002 * 109.59356 * 353.37547 * 25 14 12 39 39 H 1.09005 * 109.58375 * 113.79737 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1465 -2.2872 3.6036 10 1 3.1468 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 1.3373 -1.5399 -1.7780 14 7 3.2539 -0.4240 -1.7226 15 6 4.1499 0.4982 -1.0116 16 6 5.4982 -0.2040 -0.7903 17 6 6.0391 -0.6929 -2.1359 18 1 6.1505 0.1549 -2.8119 19 6 7.3795 -1.3500 -1.9294 20 8 7.5383 -2.5078 -2.2360 21 8 8.3969 -0.6489 -1.4049 22 6 5.0636 -1.7041 -2.7428 23 1 5.4603 -2.0699 -3.6897 24 6 4.8795 -2.8779 -1.7787 25 6 3.7125 -1.0232 -2.9832 26 1 -0.3632 0.4360 0.9307 27 1 -0.3633 0.5880 -0.8428 28 1 -0.3633 -1.0239 -0.0877 29 1 0.7091 1.1612 3.4845 30 1 4.2970 1.3979 -1.6090 31 1 3.7123 0.7637 -0.0493 32 1 5.3630 -1.0544 -0.1220 33 1 6.2049 0.4980 -0.3476 34 1 9.2373 -1.1134 -1.2911 35 1 4.1825 -3.5963 -2.2100 36 1 5.8410 -3.3619 -1.6079 37 1 4.4838 -2.5114 -0.8315 38 1 2.9863 -1.7620 -3.3222 39 1 3.8247 -0.2450 -3.7381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -138.868013 kcal Electronic energy + Delta-G solvation = -22069.167006 eV Core-core repulsion = 18783.296985 eV Total energy + Delta-G solvation = -3285.870022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82546 -39.32599 -37.14852 -36.11867 -33.92959 -32.94946 -31.57109 -30.26975 -27.22877 -26.13931 -25.15305 -22.92633 -22.53148 -21.65142 -19.17651 -18.13847 -18.06208 -16.86226 -16.47636 -16.10096 -15.55964 -15.19102 -14.80035 -14.40103 -14.23673 -13.59093 -13.46535 -12.96577 -12.87331 -12.59093 -12.12710 -11.76759 -11.69460 -11.59132 -11.44715 -11.24954 -11.02119 -10.86920 -10.84242 -10.50990 -10.41572 -10.39607 -10.25857 -10.16074 -9.99008 -9.05576 -8.63796 -8.37078 -8.01576 -6.14173 -4.22849 2.15581 2.97735 3.22522 3.31559 3.35128 3.66824 3.79428 4.36139 4.56611 4.76581 4.99557 5.16853 5.18736 5.33821 5.36766 5.54988 5.70362 5.79969 5.82059 5.93987 6.02695 6.18808 6.27435 6.29129 6.32934 6.39577 6.51681 6.72533 6.80523 6.99932 7.09614 7.23498 7.55152 7.73562 7.84690 7.93324 8.14883 8.27323 8.78320 9.20621 9.43388 10.91192 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.006751 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.255776 B = 4146.645399 C = 4936.388104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.531 3.469 13 O -0.563 6.563 14 N -0.620 5.620 15 C 0.112 3.888 16 C -0.127 4.127 17 C -0.074 4.074 18 H 0.107 0.893 19 C 0.484 3.516 20 O -0.512 6.512 21 O -0.516 6.516 22 C -0.087 4.087 23 H 0.081 0.919 24 C -0.156 4.156 25 C 0.115 3.885 26 H 0.088 0.912 27 H 0.009 0.991 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.180 1.230 -7.593 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.323 3.677 13 O -0.441 6.441 14 N -0.355 5.355 15 C -0.011 4.011 16 C -0.165 4.165 17 C -0.093 4.093 18 H 0.125 0.875 19 C 0.326 3.674 20 O -0.400 6.400 21 O -0.328 6.328 22 C -0.106 4.106 23 H 0.100 0.900 24 C -0.213 4.213 25 C -0.009 4.009 26 H 0.107 0.893 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.364 0.791 -7.874 13.848 hybrid contribution 1.070 -0.750 0.880 1.576 sum 12.434 0.041 -6.994 14.266 Atomic orbital electron populations 1.21628 0.96232 0.99742 1.00832 1.18922 0.94671 0.96226 0.89243 0.93554 1.20792 1.31948 1.12661 0.89213 0.92369 1.24898 0.94773 0.94880 0.98939 1.69887 1.35967 1.22611 1.23684 0.86478 0.78783 0.79736 0.82747 1.19687 1.20840 1.20830 1.21971 0.79092 0.81429 0.85169 1.90520 1.56978 1.34770 1.61853 1.48186 1.16661 1.47275 1.23360 1.21824 0.88796 0.90791 0.99720 1.22062 0.97817 1.02153 0.94485 1.21148 0.87733 0.99537 1.00915 0.87501 1.23673 0.86299 0.84899 0.72491 1.90665 1.83372 1.18229 1.47731 1.84566 1.23573 1.48309 1.76338 1.21361 0.94368 0.95152 0.99717 0.90042 1.22027 1.02369 0.97183 0.99760 1.21495 0.94765 0.97718 0.86873 0.89308 0.97197 0.94351 0.92699 0.92314 0.86326 0.90033 0.89809 0.73599 0.92706 0.91252 0.91777 0.88823 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.66 37.16 0.32 -2.83 16 2 C 0.03 0.74 1.79 -92.92 -0.17 0.57 16 3 H 0.05 1.12 6.74 -51.93 -0.35 0.77 16 4 C -0.51 -13.16 7.83 -34.44 -0.27 -13.43 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 7 N -0.88 -23.65 11.29 55.43 0.63 -23.02 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.53 12.01 6.74 -10.98 -0.07 11.93 16 13 O -0.56 -14.25 15.41 5.56 0.09 -14.16 16 14 N -0.62 -11.13 2.41 -172.51 -0.41 -11.55 16 15 C 0.11 1.72 6.16 -3.49 -0.02 1.70 16 16 C -0.13 -1.70 4.97 -26.38 -0.13 -1.83 16 17 C -0.07 -0.90 2.37 -91.73 -0.22 -1.11 16 18 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.48 5.94 7.34 36.00 0.26 6.20 16 20 O -0.51 -7.60 14.51 -18.75 -0.27 -7.87 16 21 O -0.52 -4.96 13.30 -39.26 -0.52 -5.49 16 22 C -0.09 -1.19 2.36 -90.49 -0.21 -1.40 16 23 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 24 C -0.16 -2.51 8.40 37.16 0.31 -2.20 16 25 C 0.11 1.74 5.83 -3.71 -0.02 1.72 16 26 H 0.09 2.34 5.96 -51.93 -0.31 2.03 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.98 7.69 -51.93 -0.40 0.58 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.12 2.13 5.27 -51.93 -0.27 1.86 16 32 H 0.08 1.27 6.33 -51.93 -0.33 0.94 16 33 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.41 2.21 9.10 45.56 0.41 2.62 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.11 5.65 -51.93 -0.29 0.82 16 37 H 0.06 1.17 5.97 -51.93 -0.31 0.86 16 38 H 0.09 1.60 7.00 -51.93 -0.36 1.23 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -31.08 308.12 -5.89 -36.97 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.71 Total: 4.13 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.31 Total: 0.99 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.21 Total: -34.57 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.71 Total: -27.52 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.08 -5.89 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.899 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds