Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47113 * 120.00231 * 2 1 3 5 5 H 1.08007 * 119.99873 * 119.99282 * 4 2 1 6 6 C 1.37875 * 120.00195 * 299.99839 * 4 2 1 7 7 N 1.31508 * 119.99935 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46958 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47177 * 119.99809 * 8 6 4 11 11 H 1.48499 * 109.47340 * 240.00169 * 8 6 4 12 12 C 1.50700 * 109.46607 * 240.00007 * 2 1 3 13 13 O 1.21276 * 120.00499 * 334.95461 * 12 2 1 14 14 N 1.34784 * 119.99685 * 154.95658 * 12 2 1 15 15 C 1.46921 * 120.62844 * 4.90047 * 14 12 2 16 16 C 1.53626 * 108.54480 * 126.37031 * 15 14 12 17 17 C 1.53042 * 109.24297 * 54.85094 * 16 15 14 18 18 H 1.09004 * 109.44670 * 58.52830 * 17 16 15 19 19 C 1.50696 * 109.46119 * 178.49238 * 17 16 15 20 20 O 1.20825 * 119.99820 * 120.06944 * 19 17 16 21 21 O 1.34231 * 120.00067 * 300.07039 * 19 17 16 22 22 C 1.53044 * 109.54069 * 298.51842 * 17 16 15 23 23 H 1.08994 * 109.52676 * 181.33172 * 22 17 16 24 24 C 1.53011 * 109.49225 * 301.41195 * 22 17 16 25 25 C 1.46921 * 120.62894 * 185.17744 * 14 12 2 26 26 H 1.09006 * 109.46493 * 295.10040 * 1 2 3 27 27 H 1.08994 * 109.46873 * 55.09876 * 1 2 3 28 28 H 1.09001 * 109.47161 * 175.10494 * 1 2 3 29 29 H 0.97002 * 120.00025 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.58480 * 246.20105 * 15 14 12 31 31 H 1.08997 * 109.59045 * 6.62360 * 15 14 12 32 32 H 1.09001 * 109.63257 * 294.86812 * 16 15 14 33 33 H 1.09000 * 109.46200 * 174.74110 * 16 15 14 34 34 H 0.96698 * 116.99509 * 179.97438 * 21 19 17 35 35 H 1.08996 * 109.46551 * 179.83671 * 24 22 17 36 36 H 1.08992 * 109.46845 * 299.83477 * 24 22 17 37 37 H 1.08994 * 109.47172 * 59.83972 * 24 22 17 38 38 H 1.09002 * 109.59356 * 353.37547 * 25 14 12 39 39 H 1.09005 * 109.58375 * 113.79737 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1465 -2.2872 3.6036 10 1 3.1468 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 1.3373 -1.5399 -1.7780 14 7 3.2539 -0.4240 -1.7226 15 6 4.1499 0.4982 -1.0116 16 6 5.4982 -0.2040 -0.7903 17 6 6.0391 -0.6929 -2.1359 18 1 6.1505 0.1549 -2.8119 19 6 7.3795 -1.3500 -1.9294 20 8 7.5383 -2.5078 -2.2360 21 8 8.3969 -0.6489 -1.4049 22 6 5.0636 -1.7041 -2.7428 23 1 5.4603 -2.0699 -3.6897 24 6 4.8795 -2.8779 -1.7787 25 6 3.7125 -1.0232 -2.9832 26 1 -0.3632 0.4360 0.9307 27 1 -0.3633 0.5880 -0.8428 28 1 -0.3633 -1.0239 -0.0877 29 1 0.7091 1.1612 3.4845 30 1 4.2970 1.3979 -1.6090 31 1 3.7123 0.7637 -0.0493 32 1 5.3630 -1.0544 -0.1220 33 1 6.2049 0.4980 -0.3476 34 1 9.2373 -1.1134 -1.2911 35 1 4.1825 -3.5963 -2.2100 36 1 5.8410 -3.3619 -1.6079 37 1 4.4838 -2.5114 -0.8315 38 1 2.9863 -1.7620 -3.3222 39 1 3.8247 -0.2450 -3.7381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -159.004290 kcal Electronic energy + Delta-G solvation = -22070.040181 eV Core-core repulsion = 18783.296985 eV Total energy + Delta-G solvation = -3286.743196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90211 -40.73295 -38.52574 -37.06454 -35.87216 -34.37220 -32.83066 -32.16246 -28.44314 -27.60142 -27.10326 -24.35947 -23.87043 -22.86830 -20.60303 -19.45054 -18.99292 -18.44360 -18.21961 -17.37670 -16.83969 -16.59640 -16.16863 -16.06991 -15.55566 -15.03422 -14.54679 -14.45863 -14.40666 -13.88793 -13.71156 -13.49548 -13.03270 -12.87476 -12.82948 -12.76646 -12.69294 -12.50894 -12.29607 -12.17631 -12.09795 -11.94987 -11.55826 -11.51373 -11.24202 -11.05484 -10.57957 -10.23597 -9.45619 -8.15090 -6.29494 1.22549 1.40039 1.44152 1.53572 1.92501 2.13389 2.34046 2.45360 3.13784 3.49258 3.69479 3.96193 4.01802 4.16103 4.28048 4.37925 4.49094 4.58118 4.74031 4.75720 4.78424 4.82533 4.89403 4.98899 5.01676 5.09790 5.11104 5.17760 5.23899 5.39755 5.48996 5.65959 5.70134 5.87722 5.89134 6.18546 6.61187 6.73909 7.04841 7.36702 7.51285 8.90064 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.006751 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.255776 B = 4146.645399 C = 4936.388104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.029 3.971 3 H 0.047 0.953 4 C -0.517 4.517 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.527 3.473 13 O -0.601 6.601 14 N -0.612 5.612 15 C 0.108 3.892 16 C -0.119 4.119 17 C -0.070 4.070 18 H 0.144 0.856 19 C 0.491 3.509 20 O -0.543 6.543 21 O -0.508 6.508 22 C -0.080 4.080 23 H 0.101 0.899 24 C -0.151 4.151 25 C 0.113 3.887 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.426 0.574 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.460 2.398 -8.263 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.555 4.555 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.543 5.543 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.194 1.194 11 H -0.209 1.209 12 C 0.318 3.682 13 O -0.482 6.482 14 N -0.345 5.345 15 C -0.014 4.014 16 C -0.157 4.157 17 C -0.089 4.089 18 H 0.162 0.838 19 C 0.335 3.665 20 O -0.433 6.433 21 O -0.321 6.321 22 C -0.099 4.099 23 H 0.120 0.880 24 C -0.208 4.208 25 C -0.009 4.009 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.287 0.713 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.712 1.993 -8.542 16.278 hybrid contribution 0.419 -1.088 1.089 1.595 sum 14.132 0.905 -7.453 16.002 Atomic orbital electron populations 1.21500 0.97122 0.98521 1.00497 1.18834 0.94057 0.96331 0.89936 0.93495 1.20844 1.31999 1.12323 0.90347 0.93895 1.25509 0.94873 0.95459 1.01195 1.69959 1.36497 1.23428 1.24427 0.85612 0.78221 0.78765 0.79713 1.20077 1.19430 1.20924 1.21591 0.80641 0.81158 0.84771 1.90495 1.58586 1.36326 1.62835 1.48144 1.15367 1.46862 1.24096 1.21990 0.88818 0.91816 0.98816 1.21954 0.97219 1.01492 0.95052 1.21105 0.87245 0.99996 1.00526 0.83812 1.23540 0.86731 0.84307 0.71936 1.90669 1.83966 1.19479 1.49227 1.84505 1.24215 1.48028 1.75391 1.21298 0.94125 0.94483 1.00021 0.88049 1.21950 1.01688 0.98088 0.99051 1.21705 0.94764 0.98378 0.86047 0.90878 0.95803 0.96218 0.92399 0.88455 0.89294 0.92920 0.87240 0.71282 0.93974 0.91264 0.94564 0.91125 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.66 71.98 0.62 -5.42 16 2 C 0.03 1.46 1.79 -12.28 -0.02 1.44 16 3 H 0.05 2.30 6.74 -2.39 -0.02 2.28 16 4 C -0.52 -27.40 7.83 25.60 0.20 -27.20 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.58 5.29 84.66 0.45 2.03 16 7 N -0.90 -48.71 11.29 21.45 0.24 -48.47 16 8 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.53 24.19 6.74 87.66 0.59 24.78 16 13 O -0.60 -31.25 15.41 -3.02 -0.05 -31.30 16 14 N -0.61 -21.43 2.41 -818.08 -1.97 -23.40 16 15 C 0.11 3.09 6.16 86.51 0.53 3.63 16 16 C -0.12 -2.90 4.97 30.82 0.15 -2.75 16 17 C -0.07 -1.44 2.37 -11.51 -0.03 -1.47 16 18 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 19 C 0.49 10.50 7.34 71.23 0.52 11.03 16 20 O -0.54 -14.94 14.51 21.97 0.32 -14.63 16 21 O -0.51 -7.82 13.30 -51.42 -0.68 -8.51 16 22 C -0.08 -2.02 2.36 -10.71 -0.03 -2.04 16 23 H 0.10 2.24 8.07 -2.39 -0.02 2.22 16 24 C -0.15 -4.84 8.40 71.99 0.60 -4.24 16 25 C 0.11 3.22 5.83 86.36 0.50 3.72 16 26 H 0.07 3.94 5.96 -2.38 -0.01 3.93 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.02 1.02 7.69 -2.39 -0.02 1.00 16 29 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 3.15 5.27 -2.39 -0.01 3.14 16 32 H 0.05 1.61 6.33 -2.39 -0.02 1.59 16 33 H 0.11 2.13 8.08 -2.39 -0.02 2.11 16 34 H 0.43 3.11 9.10 -74.06 -0.67 2.44 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 2.22 5.65 -2.39 -0.01 2.20 16 37 H 0.04 1.35 5.97 -2.39 -0.01 1.33 16 38 H 0.07 2.38 7.00 -2.39 -0.02 2.36 16 39 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -68.71 308.12 4.39 -64.31 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.40 Total: 14.45 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.11 Total: 3.50 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.73 Total: -71.86 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.41 Total: -54.43 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.71 4.39 -64.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.689 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds