Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.50697 * 109.46701 * 119.99150 * 2 1 3 5 5 H 1.08000 * 119.99424 * 120.00600 * 4 2 1 6 6 C 1.37872 * 120.00453 * 299.99930 * 4 2 1 7 7 N 1.31516 * 120.00181 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47174 * 120.00095 * 8 6 4 11 11 H 1.48499 * 109.47182 * 240.00398 * 8 6 4 12 12 C 1.50694 * 109.47142 * 239.99728 * 2 1 3 13 13 O 1.21282 * 119.99548 * 245.70616 * 12 2 1 14 14 N 1.34776 * 120.00469 * 65.71463 * 12 2 1 15 15 C 1.46503 * 119.99665 * 5.71322 * 14 12 2 16 16 C 1.46500 * 120.00103 * 185.72431 * 14 12 2 17 17 C 1.50700 * 110.43839 * 62.73287 * 16 14 12 18 18 O 1.20826 * 120.00038 * 145.70017 * 17 16 14 19 19 O 1.34231 * 119.99840 * 325.70114 * 17 16 14 20 20 C 1.54892 * 110.48272 * 300.04869 * 16 14 12 21 21 C 1.54890 * 102.74744 * 279.26607 * 20 16 14 22 22 C 1.54269 * 104.19799 * 322.05947 * 21 20 16 23 23 C 1.53878 * 106.59850 * 23.60761 * 22 21 20 24 24 H 1.09001 * 109.47664 * 295.00072 * 1 2 3 25 25 H 1.09001 * 109.46984 * 174.99790 * 1 2 3 26 26 H 1.09004 * 109.47184 * 55.00192 * 1 2 3 27 27 H 0.96998 * 120.00300 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46969 * 24.51083 * 15 14 12 29 29 H 1.09000 * 109.46449 * 144.50591 * 15 14 12 30 30 H 1.08995 * 109.47625 * 264.50601 * 15 14 12 31 31 H 0.96695 * 116.99893 * 179.97438 * 19 17 16 32 32 H 1.08992 * 110.75709 * 37.57657 * 20 16 14 33 33 H 1.09003 * 110.75615 * 160.95295 * 20 16 14 34 34 H 1.09002 * 110.48802 * 203.38339 * 21 20 16 35 35 H 1.09003 * 110.48514 * 80.73820 * 21 20 16 36 36 H 1.09003 * 110.02981 * 264.32848 * 22 21 20 37 37 H 1.08998 * 110.03260 * 142.89436 * 22 21 20 38 38 H 1.08994 * 110.03660 * 240.71881 * 23 22 21 39 39 H 1.08999 * 110.02990 * 119.28423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8300 2.6034 8 14 2.3223 -1.1191 4.0081 9 1 3.1482 -2.2853 3.6041 10 1 3.1471 -0.1852 4.8161 11 1 1.1676 -1.5861 4.8166 12 6 2.0323 -0.7104 -1.2304 13 8 2.6419 -1.7533 -1.1220 14 7 1.8044 -0.1869 -2.4512 15 6 1.1799 1.1323 -2.5775 16 6 2.1810 -0.9371 -3.6519 17 6 1.4049 -2.2263 -3.7319 18 8 1.0726 -2.6658 -4.8073 19 8 1.0827 -2.8865 -2.6084 20 6 3.7045 -1.2166 -3.6607 21 6 4.2940 0.1190 -4.1782 22 6 3.2887 0.5859 -5.2511 23 6 1.9452 -0.0856 -4.9166 24 1 -0.3634 0.4343 0.9314 25 1 -0.3633 -1.0238 -0.0896 26 1 -0.3634 0.5894 -0.8419 27 1 0.7081 1.1613 3.4843 28 1 1.3625 1.7090 -1.6708 29 1 1.6065 1.6558 -3.4331 30 1 0.1062 1.0137 -2.7225 31 1 0.5840 -3.7087 -2.7101 32 1 4.0633 -1.4331 -2.6546 33 1 3.9433 -2.0338 -4.3415 34 1 5.2765 -0.0439 -4.6212 35 1 4.3550 0.8476 -3.3698 36 1 3.6260 0.2740 -6.2396 37 1 3.1830 1.6702 -5.2170 38 1 1.6305 -0.7232 -5.7426 39 1 1.1875 0.6729 -4.7201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -121.283668 kcal Electronic energy + Delta-G solvation = -22505.385058 eV Core-core repulsion = 19220.277551 eV Total energy + Delta-G solvation = -3285.107507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85156 -38.88316 -37.28254 -35.68309 -34.15011 -33.52302 -30.56951 -29.20970 -28.55848 -25.89975 -25.10673 -23.15700 -22.60167 -20.74641 -19.66208 -18.57000 -17.64415 -16.83365 -16.30034 -15.98024 -15.58296 -15.06906 -14.74412 -14.36932 -14.13850 -13.51775 -13.32852 -12.91513 -12.81158 -12.25306 -12.09447 -11.81654 -11.55413 -11.38343 -11.33651 -11.09679 -11.06435 -10.97316 -10.95686 -10.68295 -10.56973 -10.45979 -10.27430 -10.15458 -9.94109 -8.93286 -8.52204 -8.23221 -8.13834 -6.01934 -4.04706 2.35839 3.25851 3.32520 3.40103 3.45377 3.53245 3.82975 4.38416 4.48209 4.57652 4.94736 5.31181 5.31281 5.38538 5.40824 5.45994 5.56386 5.64578 5.74307 5.84628 5.89437 5.97653 6.07885 6.11093 6.12266 6.29665 6.39364 6.67597 6.74741 6.87533 6.96819 7.06714 7.46907 7.77383 7.97105 8.12531 8.20783 8.39781 9.04454 9.26101 9.60718 11.05427 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.006163 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.326359 B = 4542.469066 C = 4709.366320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.034 3.966 3 H 0.049 0.951 4 C -0.496 4.496 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.525 3.475 13 O -0.516 6.516 14 N -0.619 5.619 15 C 0.077 3.923 16 C 0.184 3.816 17 C 0.485 3.515 18 O -0.533 6.533 19 O -0.477 6.477 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.130 4.130 24 H 0.093 0.907 25 H 0.028 0.972 26 H 0.017 0.983 27 H 0.259 0.741 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.397 0.603 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 1.577 -13.621 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.317 3.683 13 O -0.389 6.389 14 N -0.357 5.357 15 C -0.065 4.065 16 C 0.097 3.903 17 C 0.327 3.673 18 O -0.423 6.423 19 O -0.284 6.284 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.168 4.168 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.254 0.746 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.713 1.355 -13.619 13.793 hybrid contribution -0.264 -0.948 0.709 1.213 sum 1.448 0.407 -12.910 12.997 Atomic orbital electron populations 1.21790 0.96504 0.99115 1.01865 1.18851 0.94180 0.96506 0.89103 0.93340 1.21203 1.30649 1.12649 0.88970 0.90748 1.24937 0.95201 0.95091 0.99064 1.69874 1.37258 1.23210 1.23361 0.86432 0.78615 0.79789 0.82613 1.19593 1.21126 1.21108 1.21964 0.77472 0.85272 0.83638 1.90500 1.39096 1.23603 1.85728 1.48172 1.63826 1.19252 1.04447 1.21918 0.97095 0.84267 1.03264 1.20809 0.94575 0.86737 0.88216 1.23873 0.75870 0.86165 0.81384 1.90643 1.52533 1.68631 1.30520 1.84918 1.68472 1.39068 1.35951 1.22910 0.91235 0.97986 1.04310 1.22329 0.98246 0.96853 0.98235 1.22113 0.94174 1.00195 0.99221 1.22612 0.99259 0.99348 0.95537 0.88843 0.95279 0.96444 0.93073 0.89456 0.91693 0.93156 0.74610 0.87861 0.90945 0.91247 0.90955 0.91404 0.91341 0.88975 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.78 37.16 0.33 -2.76 16 2 C 0.03 0.84 1.82 -92.93 -0.17 0.67 16 3 H 0.05 1.21 6.91 -51.93 -0.36 0.85 16 4 C -0.50 -13.80 8.37 -34.44 -0.29 -14.09 16 5 H 0.07 2.19 6.77 -52.49 -0.36 1.83 16 6 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 7 N -0.90 -24.84 11.29 55.43 0.63 -24.22 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.53 11.55 5.76 -10.99 -0.06 11.48 16 13 O -0.52 -12.59 11.43 -17.25 -0.20 -12.79 16 14 N -0.62 -10.78 2.80 -166.04 -0.47 -11.24 16 15 C 0.08 1.10 7.83 59.85 0.47 1.57 16 16 C 0.18 2.92 0.73 -131.31 -0.10 2.83 16 17 C 0.49 8.45 7.19 36.01 0.26 8.71 16 18 O -0.53 -9.62 16.34 -18.75 -0.31 -9.93 16 19 O -0.48 -8.52 10.27 -46.83 -0.48 -9.00 16 20 C -0.13 -1.92 5.67 -24.74 -0.14 -2.06 16 21 C -0.12 -1.44 6.79 -25.07 -0.17 -1.61 16 22 C -0.12 -1.24 6.49 -25.61 -0.17 -1.41 16 23 C -0.13 -1.62 5.31 -25.61 -0.14 -1.75 16 24 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.33 5.73 -51.93 -0.30 0.03 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.09 1.33 5.97 -51.93 -0.31 1.02 16 29 H 0.06 0.73 5.79 -51.93 -0.30 0.43 16 30 H 0.05 0.68 7.32 -51.93 -0.38 0.30 16 31 H 0.40 5.16 9.10 45.56 0.41 5.58 16 32 H 0.10 1.89 5.98 -51.93 -0.31 1.58 16 33 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.09 1.19 6.79 -51.93 -0.35 0.84 16 39 H 0.09 0.97 5.48 -51.93 -0.28 0.69 16 LS Contribution 301.84 15.07 4.55 4.55 Total: -1.00 -32.05 301.84 -6.07 -38.13 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.51 Total: 4.85 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.27 Total: 3.06 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.16 Total: -35.46 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.98 Total: -31.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.05 -6.07 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.157 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds