Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.50697 * 109.46701 * 119.99150 * 2 1 3 5 5 H 1.08000 * 119.99424 * 120.00600 * 4 2 1 6 6 C 1.37872 * 120.00453 * 299.99930 * 4 2 1 7 7 N 1.31516 * 120.00181 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47174 * 120.00095 * 8 6 4 11 11 H 1.48499 * 109.47182 * 240.00398 * 8 6 4 12 12 C 1.50694 * 109.47142 * 239.99728 * 2 1 3 13 13 O 1.21282 * 119.99548 * 245.70616 * 12 2 1 14 14 N 1.34776 * 120.00469 * 65.71463 * 12 2 1 15 15 C 1.46503 * 119.99665 * 5.71322 * 14 12 2 16 16 C 1.46500 * 120.00103 * 185.72431 * 14 12 2 17 17 C 1.50700 * 110.43839 * 62.73287 * 16 14 12 18 18 O 1.20826 * 120.00038 * 145.70017 * 17 16 14 19 19 O 1.34231 * 119.99840 * 325.70114 * 17 16 14 20 20 C 1.54892 * 110.48272 * 300.04869 * 16 14 12 21 21 C 1.54890 * 102.74744 * 279.26607 * 20 16 14 22 22 C 1.54269 * 104.19799 * 322.05947 * 21 20 16 23 23 C 1.53878 * 106.59850 * 23.60761 * 22 21 20 24 24 H 1.09001 * 109.47664 * 295.00072 * 1 2 3 25 25 H 1.09001 * 109.46984 * 174.99790 * 1 2 3 26 26 H 1.09004 * 109.47184 * 55.00192 * 1 2 3 27 27 H 0.96998 * 120.00300 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.46969 * 24.51083 * 15 14 12 29 29 H 1.09000 * 109.46449 * 144.50591 * 15 14 12 30 30 H 1.08995 * 109.47625 * 264.50601 * 15 14 12 31 31 H 0.96695 * 116.99893 * 179.97438 * 19 17 16 32 32 H 1.08992 * 110.75709 * 37.57657 * 20 16 14 33 33 H 1.09003 * 110.75615 * 160.95295 * 20 16 14 34 34 H 1.09002 * 110.48802 * 203.38339 * 21 20 16 35 35 H 1.09003 * 110.48514 * 80.73820 * 21 20 16 36 36 H 1.09003 * 110.02981 * 264.32848 * 22 21 20 37 37 H 1.08998 * 110.03260 * 142.89436 * 22 21 20 38 38 H 1.08994 * 110.03660 * 240.71881 * 23 22 21 39 39 H 1.08999 * 110.02990 * 119.28423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8300 2.6034 8 14 2.3223 -1.1191 4.0081 9 1 3.1482 -2.2853 3.6041 10 1 3.1471 -0.1852 4.8161 11 1 1.1676 -1.5861 4.8166 12 6 2.0323 -0.7104 -1.2304 13 8 2.6419 -1.7533 -1.1220 14 7 1.8044 -0.1869 -2.4512 15 6 1.1799 1.1323 -2.5775 16 6 2.1810 -0.9371 -3.6519 17 6 1.4049 -2.2263 -3.7319 18 8 1.0726 -2.6658 -4.8073 19 8 1.0827 -2.8865 -2.6084 20 6 3.7045 -1.2166 -3.6607 21 6 4.2940 0.1190 -4.1782 22 6 3.2887 0.5859 -5.2511 23 6 1.9452 -0.0856 -4.9166 24 1 -0.3634 0.4343 0.9314 25 1 -0.3633 -1.0238 -0.0896 26 1 -0.3634 0.5894 -0.8419 27 1 0.7081 1.1613 3.4843 28 1 1.3625 1.7090 -1.6708 29 1 1.6065 1.6558 -3.4331 30 1 0.1062 1.0137 -2.7225 31 1 0.5840 -3.7087 -2.7101 32 1 4.0633 -1.4331 -2.6546 33 1 3.9433 -2.0338 -4.3415 34 1 5.2765 -0.0439 -4.6212 35 1 4.3550 0.8476 -3.3698 36 1 3.6260 0.2740 -6.2396 37 1 3.1830 1.6702 -5.2170 38 1 1.6305 -0.7232 -5.7426 39 1 1.1875 0.6729 -4.7201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = -141.934976 kcal Electronic energy + Delta-G solvation = -22506.280566 eV Core-core repulsion = 19220.277551 eV Total energy + Delta-G solvation = -3286.003015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18708 -40.37865 -38.63057 -37.08067 -35.88211 -35.16410 -32.40539 -30.36747 -29.74426 -27.27739 -27.05881 -24.52379 -24.21839 -21.97094 -20.91100 -19.96159 -19.06330 -18.33911 -18.08517 -17.45919 -17.07101 -16.49523 -16.36860 -15.76038 -15.58487 -15.04840 -14.53428 -14.42868 -14.31410 -13.88550 -13.37956 -13.27168 -12.95236 -12.83819 -12.79595 -12.60014 -12.51196 -12.39679 -12.23143 -12.18040 -12.15295 -11.99685 -11.92343 -11.65791 -11.23986 -10.96595 -10.52823 -10.04746 -9.56281 -8.11877 -6.21105 1.00471 1.39699 1.42339 1.55082 1.90732 2.10225 2.28382 2.47418 3.17779 3.29590 3.52271 3.99377 4.19222 4.27550 4.36943 4.38537 4.43194 4.47206 4.64668 4.70101 4.74662 4.83495 4.96291 5.01139 5.04243 5.05918 5.08448 5.16963 5.26685 5.43736 5.46172 5.52660 5.70311 5.78031 5.98033 6.25342 6.62353 6.88028 6.93949 7.44828 7.61493 8.93824 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.006163 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.326359 B = 4542.469066 C = 4709.366320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.032 3.968 3 H 0.041 0.959 4 C -0.522 4.522 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.526 3.474 13 O -0.549 6.549 14 N -0.610 5.610 15 C 0.068 3.932 16 C 0.175 3.825 17 C 0.481 3.519 18 O -0.542 6.542 19 O -0.497 6.497 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.015 0.985 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 2.886 -15.252 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 H 0.059 0.941 4 C -0.560 4.560 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.426 6.426 14 N -0.346 5.346 15 C -0.074 4.074 16 C 0.088 3.912 17 C 0.324 3.676 18 O -0.433 6.433 19 O -0.307 6.307 20 C -0.167 4.167 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.161 4.161 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.272 0.728 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.612 2.690 -15.278 15.596 hybrid contribution -0.248 -1.390 1.194 1.849 sum 1.364 1.300 -14.084 14.209 Atomic orbital electron populations 1.21592 0.95556 0.98617 1.02062 1.18746 0.94891 0.95817 0.89451 0.94096 1.21339 1.31115 1.12460 0.91107 0.93380 1.25538 0.95334 0.95762 1.01242 1.69945 1.37388 1.23672 1.24090 0.85612 0.78281 0.78639 0.79748 1.20543 1.20006 1.20231 1.21447 0.77428 0.84757 0.84665 1.90485 1.40604 1.24961 1.86531 1.47964 1.62830 1.20143 1.03646 1.22180 0.98013 0.82690 1.04473 1.21185 0.94672 0.86556 0.88774 1.24228 0.75709 0.86652 0.81049 1.90628 1.52984 1.69099 1.30605 1.84908 1.68897 1.40220 1.36655 1.22882 0.91138 1.00233 1.02476 1.22325 0.99705 0.94546 0.98585 1.22131 0.92038 1.01419 0.99253 1.22677 1.01092 0.99161 0.93214 0.91205 0.96568 0.92934 0.92716 0.90600 0.87789 0.91826 0.72818 0.91598 0.90432 0.89362 0.91920 0.89530 0.88917 0.89169 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.78 71.98 0.63 -4.89 16 2 C 0.03 1.58 1.82 -12.29 -0.02 1.56 16 3 H 0.04 2.07 6.91 -2.39 -0.02 2.05 16 4 C -0.52 -29.86 8.37 25.60 0.21 -29.65 16 5 H 0.05 2.96 6.77 -2.91 -0.02 2.94 16 6 C 0.02 1.11 5.29 84.65 0.45 1.56 16 7 N -0.91 -50.63 11.29 21.45 0.24 -50.39 16 8 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.53 23.49 5.76 87.66 0.51 24.00 16 13 O -0.55 -27.82 11.43 18.77 0.21 -27.60 16 14 N -0.61 -20.59 2.80 -797.61 -2.23 -22.82 16 15 C 0.07 1.75 7.83 127.77 1.00 2.75 16 16 C 0.18 5.31 0.73 3.93 0.00 5.32 16 17 C 0.48 16.47 7.19 71.24 0.51 16.98 16 18 O -0.54 -18.99 16.34 21.96 0.36 -18.63 16 19 O -0.50 -17.99 10.27 -44.19 -0.45 -18.45 16 20 C -0.13 -3.83 5.67 31.89 0.18 -3.65 16 21 C -0.11 -2.47 6.79 31.67 0.22 -2.25 16 22 C -0.11 -1.83 6.49 31.32 0.20 -1.63 16 23 C -0.12 -2.66 5.31 31.32 0.17 -2.49 16 24 H 0.07 3.55 5.95 -2.39 -0.01 3.54 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 1.97 5.73 -2.38 -0.01 1.96 16 27 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.08 2.18 5.97 -2.39 -0.01 2.17 16 29 H 0.10 1.89 5.79 -2.39 -0.01 1.87 16 30 H 0.06 1.50 7.32 -2.39 -0.02 1.49 16 31 H 0.41 10.95 9.10 -74.06 -0.67 10.28 16 32 H 0.07 2.48 5.98 -2.39 -0.01 2.47 16 33 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 38 H 0.09 2.04 6.79 -2.39 -0.02 2.03 16 39 H 0.10 1.86 5.48 -2.39 -0.01 1.85 16 Total: -1.00 -70.59 301.84 4.62 -65.97 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.41 Total: 17.50 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.06 Total: 7.60 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.99 Total: -73.22 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: 0.12 Total: -64.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.59 4.62 -65.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.960 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds