Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47509 * 2 1 4 4 C 1.53007 * 109.46703 * 240.00556 * 2 1 3 5 5 C 1.50698 * 109.47155 * 65.00410 * 4 2 1 6 6 O 1.20824 * 119.99880 * 359.97438 * 5 4 2 7 7 O 1.34226 * 119.99766 * 180.27459 * 5 4 2 8 8 C 1.50700 * 109.47510 * 120.00812 * 2 1 3 9 9 O 1.21277 * 120.00181 * 94.70235 * 8 2 1 10 10 N 1.34778 * 119.99495 * 274.70767 * 8 2 1 11 11 C 1.46927 * 120.63246 * 4.96939 * 10 8 2 12 12 C 1.53624 * 108.54371 * 126.37059 * 11 10 8 13 13 C 1.53044 * 109.24199 * 54.85349 * 12 11 10 14 14 C 1.50698 * 109.45166 * 178.49728 * 13 12 11 15 15 H 1.07998 * 119.99999 * 120.05450 * 14 13 12 16 16 C 1.37883 * 119.99652 * 300.06627 * 14 13 12 17 17 N 1.31514 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99489 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47489 * 59.99733 * 18 16 14 20 20 H 1.48500 * 109.46833 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47048 * 299.99455 * 18 16 14 22 22 C 1.53043 * 109.53733 * 298.51353 * 13 12 11 23 23 C 1.46933 * 120.62614 * 185.25062 * 10 8 2 24 24 H 1.08995 * 109.47862 * 174.77624 * 1 2 3 25 25 H 1.09008 * 109.47080 * 294.77401 * 1 2 3 26 26 H 1.09002 * 109.47223 * 54.77539 * 1 2 3 27 27 H 1.08997 * 109.47238 * 304.99814 * 4 2 1 28 28 H 1.08998 * 109.46854 * 184.99999 * 4 2 1 29 29 H 0.96706 * 116.99831 * 179.71889 * 7 5 4 30 30 H 1.09003 * 109.58392 * 246.20104 * 11 10 8 31 31 H 1.08991 * 109.58818 * 6.62705 * 11 10 8 32 32 H 1.08995 * 109.63351 * 294.86870 * 12 11 10 33 33 H 1.08992 * 109.43267 * 174.71772 * 12 11 10 34 34 H 1.09004 * 109.45871 * 58.53252 * 13 12 11 35 35 H 0.96998 * 120.00046 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.49310 * 301.41025 * 22 13 12 37 37 H 1.09004 * 109.49318 * 181.31416 * 22 13 12 38 38 H 1.08996 * 109.58800 * 353.36857 * 23 10 8 39 39 H 1.08995 * 109.58664 * 113.65719 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 8 1.0133 1.0833 -2.3636 7 8 1.9786 -0.3924 -3.6955 8 6 2.0324 -0.7106 1.2303 9 8 2.3157 -1.8886 1.1771 10 7 2.1667 -0.0368 2.3899 11 6 1.7260 1.3605 2.4992 12 6 0.7684 1.4787 3.6946 13 6 1.4583 0.9376 4.9490 14 6 0.5365 1.0852 6.1320 15 1 0.2241 0.2120 6.6854 16 6 0.0918 2.3352 6.5076 17 7 0.4724 3.3985 5.8338 18 14 -1.0514 2.5181 7.9736 19 1 -0.3824 1.9943 9.1915 20 1 -1.3816 3.9528 8.1677 21 1 -2.2996 1.7525 7.7264 22 6 1.7980 -0.5411 4.7487 23 6 2.7623 -0.6840 3.5669 24 1 -0.3634 -1.0233 -0.0936 25 1 -0.3634 0.4307 0.9332 26 1 -0.3634 0.5927 -0.8395 27 1 1.6052 -1.7197 -1.2954 28 1 3.1261 -0.7994 -1.2058 29 1 1.6971 0.1390 -4.4529 30 1 2.5910 2.0052 2.6553 31 1 1.2096 1.6533 1.5852 32 1 -0.1350 0.9012 3.4987 33 1 0.5059 2.5255 3.8468 34 1 2.3747 1.4994 5.1303 35 1 0.1598 4.2778 6.0983 36 1 0.8848 -1.0995 4.5428 37 1 2.2683 -0.9318 5.6512 38 1 2.9296 -1.7405 3.3575 39 1 3.7111 -0.2042 3.8067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604096503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -145.173540 kcal Electronic energy + Delta-G solvation = -21302.090463 eV Core-core repulsion = 18015.947013 eV Total energy + Delta-G solvation = -3286.143450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69416 -39.70098 -36.97115 -36.40261 -34.33685 -33.48404 -31.21136 -30.07668 -28.42167 -26.36847 -24.35826 -22.82780 -22.36147 -21.16960 -19.55956 -18.50314 -17.89352 -17.45983 -16.38805 -16.20857 -15.84895 -15.34642 -14.82523 -14.56244 -14.16533 -13.54663 -13.21508 -13.07344 -12.96386 -12.72704 -12.45058 -12.34399 -12.09540 -11.66556 -11.54460 -11.34657 -11.22163 -11.07726 -10.93288 -10.68402 -10.62466 -10.40947 -10.11082 -9.68480 -9.36450 -9.18807 -8.93613 -8.39325 -8.03178 -6.04401 -4.10693 2.03779 2.74215 2.91933 3.29139 3.34060 3.36975 3.53458 4.39898 4.46468 4.80233 4.84213 5.16426 5.24942 5.33609 5.52029 5.54167 5.61772 5.76766 5.87372 5.91774 6.01896 6.06342 6.12639 6.20281 6.28318 6.40164 6.43250 6.64000 6.86861 7.01431 7.12587 7.25942 7.64616 7.71148 7.88366 7.90160 8.02239 8.38579 8.48441 8.92448 9.54544 11.01047 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.004339 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.902179 B = 6451.136485 C = 6988.832068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.096 4.096 5 C 0.480 3.520 6 O -0.511 6.511 7 O -0.518 6.518 8 C 0.518 3.482 9 O -0.560 6.560 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.409 0.591 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -4.580 -14.576 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 H 0.121 0.879 4 C -0.134 4.134 5 C 0.323 3.677 6 O -0.399 6.399 7 O -0.330 6.330 8 C 0.305 3.695 9 O -0.440 6.440 10 N -0.328 5.328 11 C -0.025 4.025 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.161 4.161 23 C -0.011 4.011 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.177 -4.935 -14.200 15.365 hybrid contribution -0.849 0.675 0.364 1.144 sum 2.328 -4.260 -13.836 14.663 Atomic orbital electron populations 1.21926 0.91894 1.02819 1.04230 1.21087 0.98857 1.00851 0.91291 0.87940 1.21165 1.04294 1.00273 0.87630 1.23518 0.75654 0.83815 0.84697 1.90713 1.37355 1.24774 1.87024 1.84549 1.74911 1.56484 1.17091 1.20305 0.77798 0.86890 0.84482 1.90638 1.52312 1.15680 1.85339 1.48228 1.59821 1.14129 1.10583 1.22249 0.99173 0.80094 1.00938 1.22093 0.96082 1.05055 0.92863 1.18637 0.96151 0.89190 0.93023 1.21167 1.28708 0.92669 1.12610 0.92763 1.24953 0.96303 0.95966 0.96666 1.69820 1.45082 0.98301 1.39849 0.86677 0.81317 0.76921 0.83199 1.20315 1.21300 1.20338 1.22001 0.97809 1.01049 0.95253 1.21717 0.96189 0.97930 0.85291 0.92302 0.91101 0.90090 0.86548 0.87315 0.73269 0.91872 0.90944 0.94173 0.87729 0.95460 0.92897 0.92933 0.92159 0.90316 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.55 37.15 0.32 -1.68 16 2 C -0.10 -1.33 1.50 -91.77 -0.14 -1.47 16 3 H 0.10 1.34 6.54 -51.93 -0.34 1.00 16 4 C -0.10 -1.06 4.73 -27.88 -0.13 -1.20 16 5 C 0.48 5.15 8.07 36.00 0.29 5.44 16 6 O -0.51 -6.78 14.73 -18.75 -0.28 -7.06 16 7 O -0.52 -4.23 13.42 -39.25 -0.53 -4.75 16 8 C 0.52 8.58 6.80 -10.98 -0.07 8.50 16 9 O -0.56 -10.54 15.62 5.56 0.09 -10.46 16 10 N -0.60 -10.42 2.97 -172.50 -0.51 -10.93 16 11 C 0.10 1.71 5.95 -3.49 -0.02 1.69 16 12 C -0.12 -2.66 5.17 -26.38 -0.14 -2.79 16 13 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 14 C -0.51 -13.57 8.56 -34.44 -0.29 -13.86 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.25 11.31 55.43 0.63 -23.62 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 23 C 0.11 1.98 6.44 -3.71 -0.02 1.96 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.01 7.20 -51.92 -0.37 0.64 16 26 H 0.08 1.05 6.07 -51.93 -0.32 0.73 16 27 H 0.12 1.26 8.03 -51.93 -0.42 0.85 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.41 1.58 9.10 45.56 0.41 1.99 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.12 4.89 -51.93 -0.25 0.87 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.48 313.40 -6.42 -36.90 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.89 Total: 2.99 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.64 Total: -3.53 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.11 Total: -34.56 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.72 Total: -22.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.48 -6.42 -36.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604096503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.270 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds