Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47509 * 2 1 4 4 C 1.53007 * 109.46703 * 240.00556 * 2 1 3 5 5 C 1.50698 * 109.47155 * 65.00410 * 4 2 1 6 6 O 1.20824 * 119.99880 * 359.97438 * 5 4 2 7 7 O 1.34226 * 119.99766 * 180.27459 * 5 4 2 8 8 C 1.50700 * 109.47510 * 120.00812 * 2 1 3 9 9 O 1.21277 * 120.00181 * 94.70235 * 8 2 1 10 10 N 1.34778 * 119.99495 * 274.70767 * 8 2 1 11 11 C 1.46927 * 120.63246 * 4.96939 * 10 8 2 12 12 C 1.53624 * 108.54371 * 126.37059 * 11 10 8 13 13 C 1.53044 * 109.24199 * 54.85349 * 12 11 10 14 14 C 1.50698 * 109.45166 * 178.49728 * 13 12 11 15 15 H 1.07998 * 119.99999 * 120.05450 * 14 13 12 16 16 C 1.37883 * 119.99652 * 300.06627 * 14 13 12 17 17 N 1.31514 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99489 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47489 * 59.99733 * 18 16 14 20 20 H 1.48500 * 109.46833 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47048 * 299.99455 * 18 16 14 22 22 C 1.53043 * 109.53733 * 298.51353 * 13 12 11 23 23 C 1.46933 * 120.62614 * 185.25062 * 10 8 2 24 24 H 1.08995 * 109.47862 * 174.77624 * 1 2 3 25 25 H 1.09008 * 109.47080 * 294.77401 * 1 2 3 26 26 H 1.09002 * 109.47223 * 54.77539 * 1 2 3 27 27 H 1.08997 * 109.47238 * 304.99814 * 4 2 1 28 28 H 1.08998 * 109.46854 * 184.99999 * 4 2 1 29 29 H 0.96706 * 116.99831 * 179.71889 * 7 5 4 30 30 H 1.09003 * 109.58392 * 246.20104 * 11 10 8 31 31 H 1.08991 * 109.58818 * 6.62705 * 11 10 8 32 32 H 1.08995 * 109.63351 * 294.86870 * 12 11 10 33 33 H 1.08992 * 109.43267 * 174.71772 * 12 11 10 34 34 H 1.09004 * 109.45871 * 58.53252 * 13 12 11 35 35 H 0.96998 * 120.00046 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.49310 * 301.41025 * 22 13 12 37 37 H 1.09004 * 109.49318 * 181.31416 * 22 13 12 38 38 H 1.08996 * 109.58800 * 353.36857 * 23 10 8 39 39 H 1.08995 * 109.58664 * 113.65719 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6412 0.0573 -2.4766 6 8 1.0133 1.0833 -2.3636 7 8 1.9786 -0.3924 -3.6955 8 6 2.0324 -0.7106 1.2303 9 8 2.3157 -1.8886 1.1771 10 7 2.1667 -0.0368 2.3899 11 6 1.7260 1.3605 2.4992 12 6 0.7684 1.4787 3.6946 13 6 1.4583 0.9376 4.9490 14 6 0.5365 1.0852 6.1320 15 1 0.2241 0.2120 6.6854 16 6 0.0918 2.3352 6.5076 17 7 0.4724 3.3985 5.8338 18 14 -1.0514 2.5181 7.9736 19 1 -0.3824 1.9943 9.1915 20 1 -1.3816 3.9528 8.1677 21 1 -2.2996 1.7525 7.7264 22 6 1.7980 -0.5411 4.7487 23 6 2.7623 -0.6840 3.5669 24 1 -0.3634 -1.0233 -0.0936 25 1 -0.3634 0.4307 0.9332 26 1 -0.3634 0.5927 -0.8395 27 1 1.6052 -1.7197 -1.2954 28 1 3.1261 -0.7994 -1.2058 29 1 1.6971 0.1390 -4.4529 30 1 2.5910 2.0052 2.6553 31 1 1.2096 1.6533 1.5852 32 1 -0.1350 0.9012 3.4987 33 1 0.5059 2.5255 3.8468 34 1 2.3747 1.4994 5.1303 35 1 0.1598 4.2778 6.0983 36 1 0.8848 -1.0995 4.5428 37 1 2.2683 -0.9318 5.6512 38 1 2.9296 -1.7405 3.3575 39 1 3.7111 -0.2042 3.8067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604096503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -164.318506 kcal Electronic energy + Delta-G solvation = -21302.920651 eV Core-core repulsion = 18015.947013 eV Total energy + Delta-G solvation = -3286.973638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71439 -40.87828 -38.49581 -37.21729 -35.51127 -35.21070 -32.94918 -31.66773 -29.41325 -28.11124 -25.73716 -24.34096 -23.81897 -22.31398 -21.04837 -19.59166 -19.11712 -18.63853 -18.19441 -17.15215 -16.98831 -16.59633 -16.47926 -16.13436 -15.33190 -14.94108 -14.71682 -14.46984 -14.40135 -14.20368 -13.67407 -13.55903 -13.24641 -13.23932 -13.05208 -12.79153 -12.47939 -12.39413 -12.28856 -12.14685 -12.12489 -11.93123 -11.51883 -11.46880 -10.99738 -10.94067 -10.59813 -10.37956 -9.54369 -8.07167 -6.20357 1.22704 1.43031 1.43841 1.50976 1.56796 1.85355 2.36522 2.44705 3.19467 3.42917 3.64286 3.87487 4.09036 4.26175 4.28400 4.38061 4.48018 4.51244 4.58987 4.59399 4.62551 4.71975 4.83877 4.90259 4.97312 4.99540 5.18690 5.21136 5.28380 5.44116 5.55362 5.65433 5.68114 5.99904 6.14181 6.40057 6.49344 6.89037 7.03844 7.13304 7.47379 8.95935 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.004339 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.902179 B = 6451.136485 C = 6988.832068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.108 0.892 4 C -0.094 4.094 5 C 0.492 3.508 6 O -0.539 6.539 7 O -0.512 6.512 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.114 4.114 13 C 0.045 3.955 14 C -0.537 4.537 15 H 0.047 0.953 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.947 3.053 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.276 1.276 22 C -0.114 4.114 23 C 0.116 3.884 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.429 0.571 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.004 0.996 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -4.951 -15.845 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.126 0.874 4 C -0.132 4.132 5 C 0.336 3.664 6 O -0.430 6.430 7 O -0.326 6.326 8 C 0.308 3.692 9 O -0.461 6.461 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.152 4.152 13 C 0.027 3.973 14 C -0.575 4.575 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.550 5.550 18 Si 0.773 3.227 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.201 1.201 22 C -0.152 4.152 23 C -0.006 4.006 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.291 0.709 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.396 -5.316 -15.501 16.735 hybrid contribution -0.904 0.750 0.730 1.383 sum 2.492 -4.566 -14.770 15.659 Atomic orbital electron populations 1.21876 0.91777 1.03037 1.03647 1.21061 0.98763 1.01007 0.90730 0.87351 1.21108 1.04984 1.00139 0.86937 1.23265 0.74894 0.83038 0.85245 1.90714 1.38786 1.25981 1.87513 1.84494 1.74396 1.56626 1.17036 1.20809 0.76864 0.86614 0.84864 1.90628 1.53093 1.16683 1.85703 1.48260 1.60059 1.14026 1.10954 1.22058 0.98551 0.80463 1.00053 1.21852 0.96477 1.02881 0.94014 1.18612 0.94669 0.91013 0.93035 1.21527 1.29482 0.92637 1.13831 0.93507 1.25615 0.97612 0.95793 0.98971 1.69935 1.45777 0.98484 1.40839 0.85783 0.79554 0.76921 0.80394 1.19957 1.20852 1.20105 1.21847 0.97994 0.98586 0.96748 1.21619 0.95934 0.98511 0.84572 0.91942 0.92505 0.89543 0.86114 0.86174 0.70887 0.91322 0.88555 0.95343 0.90334 0.97741 0.92926 0.94084 0.91797 0.89806 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.55 71.98 0.62 -3.02 16 2 C -0.09 -2.33 1.50 -11.54 -0.02 -2.35 16 3 H 0.11 2.58 6.54 -2.39 -0.02 2.56 16 4 C -0.09 -1.86 4.73 29.85 0.14 -1.72 16 5 C 0.49 9.30 8.07 71.24 0.57 9.88 16 6 O -0.54 -13.18 14.73 21.97 0.32 -12.86 16 7 O -0.51 -6.83 13.42 -51.38 -0.69 -7.52 16 8 C 0.52 16.33 6.80 87.66 0.60 16.93 16 9 O -0.58 -20.85 15.62 -3.02 -0.05 -20.90 16 10 N -0.60 -20.29 2.97 -818.07 -2.43 -22.71 16 11 C 0.11 3.79 5.95 86.51 0.51 4.31 16 12 C -0.11 -4.98 5.17 30.82 0.16 -4.82 16 13 C 0.05 2.15 2.06 -11.51 -0.02 2.13 16 14 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16 15 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 16 C 0.02 1.03 5.30 84.66 0.45 1.48 16 17 N -0.91 -50.14 11.31 21.45 0.24 -49.90 16 18 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 23 C 0.12 4.04 6.44 86.36 0.56 4.59 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.57 7.20 -2.38 -0.02 1.55 16 26 H 0.09 2.10 6.07 -2.39 -0.01 2.08 16 27 H 0.12 2.33 8.03 -2.39 -0.02 2.31 16 28 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.43 2.02 9.10 -74.05 -0.67 1.35 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.10 2.84 4.89 -2.39 -0.01 2.83 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 3.88 6.03 -2.39 -0.01 3.87 16 34 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 35 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.08 2.86 7.00 -2.39 -0.02 2.85 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -64.55 313.40 3.76 -60.79 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.39 Total: 14.01 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 3.95 Total: -5.65 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -2.18 Total: -72.62 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.41 Total: -41.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.55 3.76 -60.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604096503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.529 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds