Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.52999 * 109.47165 * 239.99833 * 2 1 3 5 5 N 1.46503 * 109.46912 * 65.00241 * 4 2 1 6 6 C 1.34782 * 120.00117 * 89.99832 * 5 4 2 7 7 O 1.21277 * 120.00068 * 176.34686 * 6 5 4 8 8 C 1.50700 * 119.99729 * 356.35669 * 6 5 4 9 9 C 1.53002 * 109.46829 * 185.02874 * 8 6 5 10 10 C 1.50700 * 109.46848 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00141 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99737 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00071 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46951 * 59.99969 * 14 12 10 16 16 H 1.48500 * 109.46748 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.46699 * 299.99863 * 14 12 10 18 18 C 1.46501 * 119.99846 * 269.99655 * 5 4 2 19 19 C 1.52997 * 117.49750 * 197.17177 * 18 5 4 20 20 C 1.53004 * 117.49296 * 128.51597 * 18 5 4 21 21 C 1.50699 * 109.47319 * 120.00354 * 2 1 3 22 22 O 1.20822 * 120.00633 * 119.99441 * 21 2 1 23 23 O 1.34238 * 119.99782 * 299.99852 * 21 2 1 24 24 H 1.09007 * 109.47520 * 59.99658 * 1 2 3 25 25 H 1.09007 * 109.47517 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47278 * 300.00030 * 1 2 3 27 27 H 1.09002 * 109.47244 * 184.99753 * 4 2 1 28 28 H 1.08999 * 109.47445 * 305.00259 * 4 2 1 29 29 H 1.08999 * 109.47139 * 305.02565 * 8 6 5 30 30 H 1.08999 * 109.47622 * 65.02716 * 8 6 5 31 31 H 1.08999 * 109.47008 * 299.99772 * 9 8 6 32 32 H 1.08999 * 109.47148 * 59.99552 * 9 8 6 33 33 H 0.96999 * 120.00083 * 179.97438 * 13 12 10 34 34 H 1.08989 * 115.55395 * 342.85162 * 18 5 4 35 35 H 1.09001 * 117.50334 * 0.02562 * 19 18 5 36 36 H 1.09004 * 117.49869 * 145.02304 * 19 18 5 37 37 H 1.09002 * 117.49888 * 214.97889 * 20 18 5 38 38 H 1.08998 * 117.50520 * 359.97438 * 20 18 5 39 39 H 0.96701 * 117.00128 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.4715 0.9870 -2.9324 7 8 2.1820 1.5672 -3.9573 8 6 3.7471 1.3297 -2.2070 9 6 4.4232 2.5161 -2.8971 10 6 5.6986 2.8592 -2.1713 11 1 5.9973 2.2879 -1.3048 12 6 6.4847 3.9018 -2.6142 13 7 6.1218 4.5965 -3.6703 14 14 8.0660 4.3267 -1.7150 15 1 8.9781 3.1551 -1.7372 16 1 8.7221 5.4783 -2.3848 17 1 7.7543 4.6849 -0.3080 18 6 0.3745 -0.2424 -3.1028 19 6 0.1944 0.2654 -4.5348 20 6 -0.5490 0.9452 -3.3822 21 6 2.0323 -0.7105 1.2304 22 8 2.7268 -1.6929 1.1196 23 8 1.7080 -0.2519 2.4496 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1262 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 3.5185 1.5923 -1.1742 30 1 4.4169 0.4698 -2.2236 31 1 4.6519 2.2535 -3.9300 32 1 3.7535 3.3759 -2.8806 33 1 6.6746 5.3302 -3.9816 34 1 -0.0921 -1.1925 -2.8433 35 1 1.0267 0.8058 -4.9857 36 1 -0.3910 -0.3507 -5.2173 37 1 -1.6231 0.7760 -3.3069 38 1 -0.2060 1.9329 -3.0742 39 1 2.0535 -0.7411 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604149579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -101.236487 kcal Electronic energy + Delta-G solvation = -21250.718008 eV Core-core repulsion = 17966.479811 eV Total energy + Delta-G solvation = -3284.238196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73938 -39.92046 -36.60495 -36.25499 -35.41402 -33.40211 -32.32322 -30.76926 -26.57208 -26.00086 -24.55059 -23.03521 -22.18537 -20.86051 -20.70287 -18.68160 -18.10844 -17.16847 -16.56243 -16.21617 -15.96365 -15.52043 -15.03293 -14.43881 -14.30535 -14.07306 -13.83045 -13.39845 -13.02849 -12.61897 -12.44543 -12.26789 -12.18309 -11.73088 -11.68232 -11.40081 -11.25667 -11.04195 -10.93726 -10.84792 -10.63162 -10.55975 -10.21601 -9.96431 -9.59825 -9.14482 -8.73702 -8.34524 -8.26866 -5.97396 -4.01880 2.05433 2.65131 3.04629 3.27799 3.33990 3.38829 3.40837 4.05806 4.45850 4.52492 4.59739 4.82679 4.93512 5.01322 5.16879 5.23102 5.37012 5.37789 5.39688 5.53736 5.62098 5.70145 5.79914 5.86516 5.98884 6.08587 6.18072 6.25603 6.32863 6.54759 6.83259 6.97491 7.62125 7.71913 7.73306 7.82941 8.04591 8.36750 8.68316 9.05934 9.61851 11.13445 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.005885 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.158825 B = 4756.999962 C = 6293.745315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.118 0.882 4 C 0.132 3.868 5 N -0.595 5.595 6 C 0.515 3.485 7 O -0.518 6.518 8 C -0.132 4.132 9 C 0.039 3.961 10 C -0.529 4.529 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.070 3.930 19 C -0.197 4.197 20 C -0.193 4.193 21 C 0.490 3.510 22 O -0.515 6.515 23 O -0.514 6.514 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 -11.775 8.470 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.136 0.864 4 C 0.008 3.992 5 N -0.327 5.327 6 C 0.306 3.694 7 O -0.394 6.394 8 C -0.171 4.171 9 C 0.001 3.999 10 C -0.567 4.567 11 H 0.073 0.927 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.034 4.034 19 C -0.235 4.235 20 C -0.231 4.231 21 C 0.331 3.669 22 O -0.403 6.403 23 O -0.326 6.326 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.748 -11.359 7.418 19.314 hybrid contribution 1.044 -0.106 1.193 1.589 sum -12.704 -11.465 8.610 19.157 Atomic orbital electron populations 1.21835 0.91561 1.02713 1.04129 1.21586 0.99124 1.02296 0.89746 0.86410 1.21340 1.01957 0.94189 0.81717 1.47503 1.18838 1.38560 1.27815 1.21655 0.85437 0.77271 0.85048 1.90442 1.74187 1.50945 1.23805 1.21982 0.92247 1.02922 0.99976 1.18895 0.94388 0.90660 0.95943 1.21172 1.06662 1.15571 1.13290 0.92709 1.25006 0.97966 0.96220 0.95033 1.69979 1.38386 1.20584 1.23842 0.86666 0.83599 0.77944 0.79829 1.20212 1.21244 1.20260 1.21602 0.86546 0.97391 0.97890 1.24130 1.04822 1.03463 0.91035 1.23260 0.97113 0.98124 1.04639 1.23357 0.76586 0.82192 0.84716 1.90732 1.35860 1.26373 1.87324 1.84544 1.72180 1.59020 1.16837 0.89961 0.92310 0.91329 0.88530 0.89576 0.90625 0.89966 0.95604 0.95940 0.92869 0.86104 0.83413 0.89915 0.89038 0.88568 0.73221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.69 37.15 0.32 -0.97 16 2 C -0.11 -1.15 2.96 -91.78 -0.27 -1.42 16 3 H 0.12 1.38 6.99 -51.93 -0.36 1.02 16 4 C 0.13 1.56 4.01 -4.04 -0.02 1.54 16 5 N -0.59 -8.36 2.67 -166.11 -0.44 -8.80 16 6 C 0.51 9.56 7.43 -10.98 -0.08 9.48 16 7 O -0.52 -11.29 11.86 5.56 0.07 -11.22 16 8 C -0.13 -2.64 4.18 -27.88 -0.12 -2.75 16 9 C 0.04 1.02 4.28 -27.88 -0.12 0.90 16 10 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 C 0.07 0.87 5.04 -67.93 -0.34 0.52 16 19 C -0.20 -2.75 9.64 -26.70 -0.26 -3.01 16 20 C -0.19 -2.43 8.85 -26.69 -0.24 -2.66 16 21 C 0.49 5.42 7.63 36.01 0.27 5.70 16 22 O -0.51 -7.03 16.68 -18.75 -0.31 -7.35 16 23 O -0.51 -4.53 13.33 -39.28 -0.52 -5.05 16 24 H 0.08 0.79 5.48 -51.93 -0.28 0.50 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.10 1.24 6.42 -51.93 -0.33 0.91 16 28 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 29 H 0.08 1.38 6.81 -51.93 -0.35 1.03 16 30 H 0.08 1.56 7.55 -51.93 -0.39 1.17 16 31 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.15 8.09 -51.94 -0.42 0.73 16 35 H 0.15 2.65 4.97 -53.35 -0.27 2.38 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.45 7.82 -51.93 -0.41 1.04 16 39 H 0.41 1.89 9.10 45.56 0.41 2.30 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -34.17 321.98 -6.79 -40.96 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.89 Total: 2.73 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.25 Total: -6.27 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.29 Total: -35.30 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.77 Total: -23.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.17 -6.79 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604149579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.273 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds