Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.52999 * 109.47165 * 239.99833 * 2 1 3 5 5 N 1.46503 * 109.46912 * 65.00241 * 4 2 1 6 6 C 1.34782 * 120.00117 * 89.99832 * 5 4 2 7 7 O 1.21277 * 120.00068 * 176.34686 * 6 5 4 8 8 C 1.50700 * 119.99729 * 356.35669 * 6 5 4 9 9 C 1.53002 * 109.46829 * 185.02874 * 8 6 5 10 10 C 1.50700 * 109.46848 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00141 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99737 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00071 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46951 * 59.99969 * 14 12 10 16 16 H 1.48500 * 109.46748 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.46699 * 299.99863 * 14 12 10 18 18 C 1.46501 * 119.99846 * 269.99655 * 5 4 2 19 19 C 1.52997 * 117.49750 * 197.17177 * 18 5 4 20 20 C 1.53004 * 117.49296 * 128.51597 * 18 5 4 21 21 C 1.50699 * 109.47319 * 120.00354 * 2 1 3 22 22 O 1.20822 * 120.00633 * 119.99441 * 21 2 1 23 23 O 1.34238 * 119.99782 * 299.99852 * 21 2 1 24 24 H 1.09007 * 109.47520 * 59.99658 * 1 2 3 25 25 H 1.09007 * 109.47517 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47278 * 300.00030 * 1 2 3 27 27 H 1.09002 * 109.47244 * 184.99753 * 4 2 1 28 28 H 1.08999 * 109.47445 * 305.00259 * 4 2 1 29 29 H 1.08999 * 109.47139 * 305.02565 * 8 6 5 30 30 H 1.08999 * 109.47622 * 65.02716 * 8 6 5 31 31 H 1.08999 * 109.47008 * 299.99772 * 9 8 6 32 32 H 1.08999 * 109.47148 * 59.99552 * 9 8 6 33 33 H 0.96999 * 120.00083 * 179.97438 * 13 12 10 34 34 H 1.08989 * 115.55395 * 342.85162 * 18 5 4 35 35 H 1.09001 * 117.50334 * 0.02562 * 19 18 5 36 36 H 1.09004 * 117.49869 * 145.02304 * 19 18 5 37 37 H 1.09002 * 117.49888 * 214.97889 * 20 18 5 38 38 H 1.08998 * 117.50520 * 359.97438 * 20 18 5 39 39 H 0.96701 * 117.00128 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.4715 0.9870 -2.9324 7 8 2.1820 1.5672 -3.9573 8 6 3.7471 1.3297 -2.2070 9 6 4.4232 2.5161 -2.8971 10 6 5.6986 2.8592 -2.1713 11 1 5.9973 2.2879 -1.3048 12 6 6.4847 3.9018 -2.6142 13 7 6.1218 4.5965 -3.6703 14 14 8.0660 4.3267 -1.7150 15 1 8.9781 3.1551 -1.7372 16 1 8.7221 5.4783 -2.3848 17 1 7.7543 4.6849 -0.3080 18 6 0.3745 -0.2424 -3.1028 19 6 0.1944 0.2654 -4.5348 20 6 -0.5490 0.9452 -3.3822 21 6 2.0323 -0.7105 1.2304 22 8 2.7268 -1.6929 1.1196 23 8 1.7080 -0.2519 2.4496 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1262 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 3.5185 1.5923 -1.1742 30 1 4.4169 0.4698 -2.2236 31 1 4.6519 2.2535 -3.9300 32 1 3.7535 3.3759 -2.8806 33 1 6.6746 5.3302 -3.9816 34 1 -0.0921 -1.1925 -2.8433 35 1 1.0267 0.8058 -4.9857 36 1 -0.3910 -0.3507 -5.2173 37 1 -1.6231 0.7760 -3.3069 38 1 -0.2060 1.9329 -3.0742 39 1 2.0535 -0.7411 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604149579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -124.512751 kcal Electronic energy + Delta-G solvation = -21251.727342 eV Core-core repulsion = 17966.479811 eV Total energy + Delta-G solvation = -3285.247531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78277 -41.04697 -37.80790 -37.17001 -36.46886 -35.43870 -33.48502 -32.64408 -27.94524 -27.44547 -25.54485 -24.56425 -23.24111 -22.50112 -21.57866 -20.00977 -19.07609 -18.57996 -17.99883 -17.28701 -17.23091 -16.68730 -16.43594 -16.35439 -15.46966 -15.16925 -14.85283 -14.66263 -14.25815 -14.22042 -13.78987 -13.65259 -13.23630 -13.05021 -12.83995 -12.69798 -12.51864 -12.50562 -12.34915 -12.16563 -11.91130 -11.87027 -11.60024 -11.42929 -11.31373 -11.20161 -10.57351 -10.20887 -9.46192 -8.19541 -6.33569 1.20960 1.40323 1.44480 1.52116 1.53822 1.74040 2.30205 2.42377 3.02855 3.13343 3.58450 3.63706 3.80152 4.02329 4.12106 4.14608 4.20632 4.36056 4.42812 4.48159 4.55912 4.70145 4.74375 4.86976 4.90349 4.94683 5.08665 5.14264 5.31314 5.42565 5.47804 5.60699 5.62914 5.80153 5.84963 6.16031 6.32156 6.84283 7.01322 7.26330 7.36719 8.92706 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.005885 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.158825 B = 4756.999962 C = 6293.745315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.105 0.895 4 C 0.128 3.872 5 N -0.581 5.581 6 C 0.512 3.488 7 O -0.560 6.560 8 C -0.121 4.121 9 C 0.047 3.953 10 C -0.546 4.546 11 H 0.071 0.929 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.078 3.922 19 C -0.217 4.217 20 C -0.183 4.183 21 C 0.498 3.502 22 O -0.543 6.543 23 O -0.510 6.510 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.096 0.904 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 -13.649 10.859 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.123 0.877 4 C 0.005 3.995 5 N -0.311 5.311 6 C 0.303 3.697 7 O -0.439 6.439 8 C -0.160 4.160 9 C 0.009 3.991 10 C -0.584 4.584 11 H 0.089 0.911 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.187 1.187 18 C -0.025 4.025 19 C -0.254 4.254 20 C -0.221 4.221 21 C 0.341 3.659 22 O -0.434 6.434 23 O -0.323 6.323 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.072 0.928 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -14.575 -13.271 9.869 22.044 hybrid contribution 1.239 0.472 0.468 1.406 sum -13.335 -12.799 10.337 21.178 Atomic orbital electron populations 1.21816 0.89728 1.03968 1.04160 1.21499 1.00608 1.01223 0.89327 0.87729 1.21527 1.01715 0.95178 0.81064 1.47365 1.18772 1.36854 1.28141 1.21307 0.85640 0.78252 0.84508 1.90490 1.75132 1.52852 1.25457 1.21717 0.93317 1.00676 1.00311 1.18645 0.94120 0.91897 0.94401 1.21656 1.07176 1.15819 1.13747 0.91071 1.26078 1.02115 0.96045 0.95805 1.70155 1.40181 1.21318 1.25833 0.85433 0.78536 0.77888 0.78780 1.18886 1.21092 1.18693 1.22014 0.85278 0.98991 0.96237 1.23960 1.04490 1.04644 0.92338 1.23235 0.98898 0.96627 1.03355 1.23238 0.75841 0.81511 0.85290 1.90732 1.37162 1.27683 1.87796 1.84497 1.71862 1.59079 1.16908 0.90577 0.90395 0.90692 0.89654 0.86823 0.88635 0.88627 0.99725 0.99716 0.92786 0.81654 0.87821 0.87284 0.85499 0.91773 0.70971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.69 71.98 0.63 -1.40 16 2 C -0.11 -2.04 2.96 -11.54 -0.03 -2.07 16 3 H 0.10 2.32 6.99 -2.39 -0.02 2.30 16 4 C 0.13 2.73 4.01 86.38 0.35 3.07 16 5 N -0.58 -15.67 2.67 -797.83 -2.13 -17.79 16 6 C 0.51 19.60 7.43 87.66 0.65 20.25 16 7 O -0.56 -26.06 11.86 -3.02 -0.04 -26.09 16 8 C -0.12 -4.95 4.18 29.85 0.12 -4.83 16 9 C 0.05 2.63 4.28 29.85 0.13 2.75 16 10 C -0.55 -31.43 9.11 25.60 0.23 -31.19 16 11 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 12 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 13 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 14 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 18 C 0.08 1.74 5.04 44.99 0.23 1.97 16 19 C -0.22 -5.94 9.64 30.62 0.30 -5.65 16 20 C -0.18 -4.35 8.85 30.62 0.27 -4.08 16 21 C 0.50 9.77 7.63 71.24 0.54 10.32 16 22 O -0.54 -13.61 16.68 21.98 0.37 -13.24 16 23 O -0.51 -7.53 13.33 -51.49 -0.69 -8.22 16 24 H 0.08 1.23 5.48 -2.38 -0.01 1.21 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.07 1.01 8.11 -2.38 -0.02 0.99 16 27 H 0.09 2.05 6.42 -2.39 -0.02 2.04 16 28 H 0.11 1.87 8.03 -2.39 -0.02 1.85 16 29 H 0.10 3.50 6.81 -2.39 -0.02 3.48 16 30 H 0.10 3.64 7.55 -2.39 -0.02 3.62 16 31 H -0.02 -0.99 8.04 -2.39 -0.02 -1.01 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.17 2.31 8.09 -2.39 -0.02 2.29 16 35 H 0.10 3.93 4.97 -24.95 -0.12 3.81 16 36 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.97 7.82 -2.39 -0.02 1.95 16 39 H 0.43 2.71 9.10 -74.06 -0.67 2.03 16 Total: -1.00 -78.60 321.98 3.98 -74.62 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.28 Total: 13.74 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.87 Total: -10.54 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.84 Total: -76.91 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.36 Total: -47.55 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.60 3.98 -74.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604149579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.891 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds