Wall clock time and date at job start Mon Mar 30 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.01470 * 2 1 4 4 C 1.52605 * 109.02760 * 241.14655 * 2 1 3 5 5 C 1.52325 * 110.67573 * 293.24278 * 4 2 1 6 6 C 1.51506 * 107.83623 * 304.44262 * 5 4 2 7 7 H 1.08996 * 109.11881 * 305.17481 * 6 5 4 8 8 O 1.41499 * 118.14030 * 179.85067 * 6 5 4 9 9 C 1.44511 * 108.23055 * 210.41489 * 8 6 5 10 10 H 1.09002 * 109.87232 * 125.51752 * 9 8 6 11 11 C 1.50703 * 109.87045 * 246.50517 * 9 8 6 12 12 O 1.20819 * 120.00219 * 3.30343 * 11 9 8 13 13 O 1.34236 * 119.99806 * 183.30832 * 11 9 8 14 14 C 1.55372 * 107.33564 * 6.08110 * 9 8 6 15 15 C 1.53795 * 101.15827 * 21.53683 * 14 9 8 16 16 H 1.09003 * 111.21442 * 79.69281 * 15 14 9 17 17 N 1.45701 * 116.21232 * 208.14011 * 15 14 9 18 18 C 1.46908 * 110.99996 * 298.81663 * 17 15 14 19 19 C 1.50696 * 109.47275 * 189.99766 * 18 17 15 20 20 H 1.08003 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00168 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99626 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46769 * 90.00125 * 23 21 19 25 25 H 1.48494 * 109.47177 * 209.99927 * 23 21 19 26 26 H 1.48498 * 109.47120 * 330.00217 * 23 21 19 27 27 H 1.09001 * 109.47099 * 301.06607 * 1 2 3 28 28 H 1.09003 * 109.47391 * 61.06429 * 1 2 3 29 29 H 1.09004 * 109.47650 * 181.06691 * 1 2 3 30 30 H 1.08994 * 109.14287 * 53.56090 * 4 2 1 31 31 H 1.09001 * 109.13865 * 172.70296 * 4 2 1 32 32 H 1.09006 * 109.55425 * 184.80900 * 5 4 2 33 33 H 1.08998 * 109.53355 * 64.07565 * 5 4 2 34 34 H 0.96695 * 117.00195 * 179.97438 * 13 11 9 35 35 H 1.08992 * 111.08832 * 139.51111 * 14 9 8 36 36 H 1.09001 * 111.08593 * 263.57218 * 14 9 8 37 37 H 1.08995 * 109.46649 * 310.00036 * 18 17 15 38 38 H 1.08997 * 109.46966 * 69.99606 * 18 17 15 39 39 H 0.97006 * 120.00078 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8851 1.0306 0.0000 4 6 2.0275 -0.6962 -1.2636 5 6 1.6712 -2.1770 -1.2376 6 6 2.2395 -2.7687 0.0361 7 1 3.3076 -2.5565 0.0828 8 8 2.0299 -4.1461 0.2835 9 6 1.9693 -4.3443 1.7137 10 1 1.0439 -4.8562 1.9779 11 6 3.1529 -5.1588 2.1685 12 8 4.0021 -5.4862 1.3740 13 8 3.2636 -5.5205 3.4565 14 6 2.0042 -2.9401 2.3777 15 6 1.5293 -2.0501 1.2168 16 1 0.4450 -2.0858 1.1104 17 7 2.0113 -0.6751 1.2211 18 6 1.5641 0.0357 2.4266 19 6 1.8663 1.5052 2.2844 20 1 2.3432 1.8742 1.3884 21 6 1.5348 2.3784 3.2987 22 7 0.9555 1.9288 4.3903 23 14 1.9100 4.1999 3.1228 24 1 0.7533 4.8847 2.4916 25 1 2.1603 4.7855 4.4642 26 1 3.1145 4.3773 2.2726 27 1 -0.3633 0.5303 0.8803 28 1 -0.3634 0.4972 -0.8994 29 1 -0.3634 -1.0275 0.0191 30 1 1.5659 -0.2299 -2.1339 31 1 3.1096 -0.5840 -1.3309 32 1 2.1077 -2.6725 -2.1048 33 1 0.5873 -2.2912 -1.2493 34 1 4.0399 -6.0427 3.7007 35 1 1.3143 -2.8872 3.2198 36 1 3.0162 -2.6766 2.6850 37 1 0.4906 -0.1040 2.5534 38 1 2.0874 -0.3603 3.2969 39 1 0.7227 2.5430 5.1041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604710039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:55 Heat of formation + Delta-G solvation = -123.629140 kcal Electronic energy + Delta-G solvation = -22036.766581 eV Core-core repulsion = 18751.557367 eV Total energy + Delta-G solvation = -3285.209215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94885 -39.67048 -37.34437 -36.00399 -33.78587 -32.48483 -31.10590 -30.09592 -27.53370 -26.13967 -24.64907 -23.27744 -21.76783 -21.19975 -20.39661 -18.76898 -18.02308 -16.64694 -16.45198 -16.03046 -15.99467 -15.44445 -14.85824 -14.66204 -14.33709 -14.04416 -13.31282 -13.01705 -12.75445 -12.52285 -12.16731 -11.93206 -11.90052 -11.78999 -11.50993 -11.33484 -11.25345 -11.06413 -10.80968 -10.76976 -10.50958 -10.36246 -10.23936 -9.88842 -9.57989 -9.37357 -9.01782 -8.53233 -7.35791 -6.11034 -4.12704 2.18088 2.78322 3.26388 3.33655 3.36939 3.75484 4.35581 4.56517 4.76829 4.86374 5.06969 5.20846 5.24981 5.29605 5.35927 5.46753 5.56856 5.60553 5.86232 5.89874 6.04793 6.07234 6.11515 6.16196 6.23580 6.26416 6.44583 6.49677 6.53738 6.74605 6.93616 6.94672 7.27493 7.35216 7.68087 7.89635 7.94561 8.09940 8.45378 8.94105 9.52146 11.00008 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021665 B = 0.005949 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.078427 B = 4705.210275 C = 5586.901183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 H 0.101 0.899 4 C -0.111 4.111 5 C -0.105 4.105 6 C 0.072 3.928 7 H 0.073 0.927 8 O -0.343 6.343 9 C 0.093 3.907 10 H 0.123 0.877 11 C 0.468 3.532 12 O -0.503 6.503 13 O -0.513 6.513 14 C -0.126 4.126 15 C 0.041 3.959 16 H 0.063 0.937 17 N -0.507 5.507 18 C 0.190 3.810 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.097 0.903 36 H 0.090 0.910 37 H -0.003 1.003 38 H 0.033 0.967 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -10.315 -5.565 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.119 0.881 4 C -0.149 4.149 5 C -0.143 4.143 6 C 0.014 3.986 7 H 0.091 0.909 8 O -0.261 6.261 9 C 0.033 3.967 10 H 0.140 0.860 11 C 0.309 3.691 12 O -0.389 6.389 13 O -0.325 6.325 14 C -0.164 4.164 15 C -0.069 4.069 16 H 0.080 0.920 17 N -0.231 5.231 18 C 0.065 3.935 19 C -0.554 4.554 20 H 0.084 0.916 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.268 0.732 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.334 -10.260 -5.877 11.829 hybrid contribution -0.173 0.739 0.453 0.884 sum 0.161 -9.522 -5.424 10.959 Atomic orbital electron populations 1.22451 0.98276 1.00857 1.02524 1.21723 0.92643 0.99814 0.88807 0.88135 1.21403 1.01787 0.93635 0.98028 1.21161 1.01114 0.95964 0.96049 1.22525 1.00114 0.79433 0.96511 0.90929 1.88343 1.93051 1.25978 1.18703 1.22568 0.94076 0.96729 0.83284 0.85992 1.23969 0.87744 0.77668 0.79712 1.90711 1.41539 1.52090 1.54607 1.84539 1.50544 1.68434 1.29016 1.22786 1.04694 0.90113 0.98843 1.23114 0.97812 0.92436 0.93528 0.91981 1.62950 1.57066 0.98974 1.04157 1.19770 0.94029 0.93325 0.86384 1.21221 1.39411 0.91623 1.03121 0.91644 1.24964 0.95178 0.99003 0.95163 1.69949 1.41644 1.35083 1.06726 0.86545 0.78719 0.85047 0.77427 1.20717 1.21237 1.19767 0.90871 0.93344 0.93551 0.91264 0.91468 0.91638 0.91408 0.73247 0.88494 0.89097 0.98535 0.94885 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.16 37.16 0.30 -2.84 16 2 C 0.08 1.41 2.51 -67.53 -0.17 1.24 16 3 H 0.10 2.01 5.76 -51.93 -0.30 1.71 16 4 C -0.11 -1.62 5.40 -27.28 -0.15 -1.77 16 5 C -0.11 -1.50 5.64 -27.83 -0.16 -1.66 16 6 C 0.07 1.17 2.98 -26.21 -0.08 1.09 16 7 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 8 O -0.34 -5.58 10.58 -54.68 -0.58 -6.16 16 9 C 0.09 1.31 4.04 -26.62 -0.11 1.20 16 10 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 11 C 0.47 6.68 7.55 36.01 0.27 6.95 16 12 O -0.50 -8.80 17.28 -25.35 -0.44 -9.24 16 13 O -0.51 -5.63 13.42 -39.27 -0.53 -6.16 16 14 C -0.13 -1.97 5.62 -25.06 -0.14 -2.11 16 15 C 0.04 0.71 1.91 -66.67 -0.13 0.58 16 16 H 0.06 1.07 5.89 -51.93 -0.31 0.77 16 17 N -0.51 -10.12 4.79 -218.74 -1.05 -11.17 16 18 C 0.19 4.57 3.99 -4.97 -0.02 4.55 16 19 C -0.52 -13.52 8.26 -34.44 -0.28 -13.81 16 20 H 0.07 1.69 5.90 -52.48 -0.31 1.38 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 23 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.07 1.48 6.51 -51.93 -0.34 1.14 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.74 4.93 -51.93 -0.26 0.49 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.94 6.90 -51.93 -0.36 0.58 16 34 H 0.41 2.66 9.10 45.56 0.41 3.08 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 1.52 7.88 -51.93 -0.41 1.11 16 37 H 0.00 -0.08 6.87 -51.93 -0.36 -0.44 16 38 H 0.03 0.87 7.83 -51.93 -0.41 0.46 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -30.93 304.58 -7.76 -38.69 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.72 Total: 3.42 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.75 Total: -5.07 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.31 Total: -35.88 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.54 Total: -21.56 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.93 -7.76 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604710039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.938 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds