Wall clock time and date at job start Mon Mar 30 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.01470 * 2 1 4 4 C 1.52605 * 109.02760 * 241.14655 * 2 1 3 5 5 C 1.52325 * 110.67573 * 293.24278 * 4 2 1 6 6 C 1.51506 * 107.83623 * 304.44262 * 5 4 2 7 7 H 1.08996 * 109.11881 * 305.17481 * 6 5 4 8 8 O 1.41499 * 118.14030 * 179.85067 * 6 5 4 9 9 C 1.44511 * 108.23055 * 210.41489 * 8 6 5 10 10 H 1.09002 * 109.87232 * 125.51752 * 9 8 6 11 11 C 1.50703 * 109.87045 * 246.50517 * 9 8 6 12 12 O 1.20819 * 120.00219 * 3.30343 * 11 9 8 13 13 O 1.34236 * 119.99806 * 183.30832 * 11 9 8 14 14 C 1.55372 * 107.33564 * 6.08110 * 9 8 6 15 15 C 1.53795 * 101.15827 * 21.53683 * 14 9 8 16 16 H 1.09003 * 111.21442 * 79.69281 * 15 14 9 17 17 N 1.45701 * 116.21232 * 208.14011 * 15 14 9 18 18 C 1.46908 * 110.99996 * 298.81663 * 17 15 14 19 19 C 1.50696 * 109.47275 * 189.99766 * 18 17 15 20 20 H 1.08003 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00168 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99626 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46769 * 90.00125 * 23 21 19 25 25 H 1.48494 * 109.47177 * 209.99927 * 23 21 19 26 26 H 1.48498 * 109.47120 * 330.00217 * 23 21 19 27 27 H 1.09001 * 109.47099 * 301.06607 * 1 2 3 28 28 H 1.09003 * 109.47391 * 61.06429 * 1 2 3 29 29 H 1.09004 * 109.47650 * 181.06691 * 1 2 3 30 30 H 1.08994 * 109.14287 * 53.56090 * 4 2 1 31 31 H 1.09001 * 109.13865 * 172.70296 * 4 2 1 32 32 H 1.09006 * 109.55425 * 184.80900 * 5 4 2 33 33 H 1.08998 * 109.53355 * 64.07565 * 5 4 2 34 34 H 0.96695 * 117.00195 * 179.97438 * 13 11 9 35 35 H 1.08992 * 111.08832 * 139.51111 * 14 9 8 36 36 H 1.09001 * 111.08593 * 263.57218 * 14 9 8 37 37 H 1.08995 * 109.46649 * 310.00036 * 18 17 15 38 38 H 1.08997 * 109.46966 * 69.99606 * 18 17 15 39 39 H 0.97006 * 120.00078 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8851 1.0306 0.0000 4 6 2.0275 -0.6962 -1.2636 5 6 1.6712 -2.1770 -1.2376 6 6 2.2395 -2.7687 0.0361 7 1 3.3076 -2.5565 0.0828 8 8 2.0299 -4.1461 0.2835 9 6 1.9693 -4.3443 1.7137 10 1 1.0439 -4.8562 1.9779 11 6 3.1529 -5.1588 2.1685 12 8 4.0021 -5.4862 1.3740 13 8 3.2636 -5.5205 3.4565 14 6 2.0042 -2.9401 2.3777 15 6 1.5293 -2.0501 1.2168 16 1 0.4450 -2.0858 1.1104 17 7 2.0113 -0.6751 1.2211 18 6 1.5641 0.0357 2.4266 19 6 1.8663 1.5052 2.2844 20 1 2.3432 1.8742 1.3884 21 6 1.5348 2.3784 3.2987 22 7 0.9555 1.9288 4.3903 23 14 1.9100 4.1999 3.1228 24 1 0.7533 4.8847 2.4916 25 1 2.1603 4.7855 4.4642 26 1 3.1145 4.3773 2.2726 27 1 -0.3633 0.5303 0.8803 28 1 -0.3634 0.4972 -0.8994 29 1 -0.3634 -1.0275 0.0191 30 1 1.5659 -0.2299 -2.1339 31 1 3.1096 -0.5840 -1.3309 32 1 2.1077 -2.6725 -2.1048 33 1 0.5873 -2.2912 -1.2493 34 1 4.0399 -6.0427 3.7007 35 1 1.3143 -2.8872 3.2198 36 1 3.0162 -2.6766 2.6850 37 1 0.4906 -0.1040 2.5534 38 1 2.0874 -0.3603 3.2969 39 1 0.7227 2.5430 5.1041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604710039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:54 Heat of formation + Delta-G solvation = -145.901966 kcal Electronic energy + Delta-G solvation = -22037.732404 eV Core-core repulsion = 18751.557367 eV Total energy + Delta-G solvation = -3286.175037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.20580 -40.88516 -38.69120 -37.10260 -35.41799 -34.18469 -32.54657 -31.41722 -29.15911 -27.76280 -25.90302 -24.95175 -23.17904 -22.42518 -21.78095 -20.14203 -19.17013 -18.26404 -17.81341 -17.41602 -17.26398 -16.90862 -16.33129 -16.15711 -15.81841 -15.37118 -14.64685 -14.48429 -14.32217 -14.09194 -13.45659 -13.36356 -13.23796 -13.11035 -12.89609 -12.78681 -12.63517 -12.59032 -12.57274 -12.31366 -12.12088 -11.70074 -11.61802 -11.45959 -11.07759 -10.79357 -10.65044 -10.56565 -8.99150 -8.19051 -6.26784 1.04791 1.41556 1.42975 1.53277 1.74791 2.40833 2.54771 3.15279 3.22105 3.43419 3.64057 3.91647 4.00003 4.06520 4.10087 4.21482 4.29873 4.35005 4.58172 4.62139 4.67509 4.73487 4.85980 4.89255 4.97838 5.07058 5.13636 5.18962 5.28311 5.34015 5.47118 5.51644 5.60955 5.67556 5.75872 6.05023 6.32191 6.67722 6.89813 6.92282 7.42544 8.92533 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021665 B = 0.005949 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.078427 B = 4705.210275 C = 5586.901183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H 0.076 0.924 4 C -0.101 4.101 5 C -0.101 4.101 6 C 0.081 3.919 7 H 0.052 0.948 8 O -0.351 6.351 9 C 0.094 3.906 10 H 0.157 0.843 11 C 0.475 3.525 12 O -0.540 6.540 13 O -0.503 6.503 14 C -0.124 4.124 15 C 0.036 3.964 16 H 0.066 0.934 17 N -0.516 5.516 18 C 0.210 3.790 19 C -0.524 4.524 20 H 0.067 0.933 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.266 1.266 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.430 0.570 35 H 0.102 0.898 36 H 0.073 0.927 37 H -0.025 1.025 38 H 0.004 0.996 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -10.699 -6.947 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 H 0.095 0.905 4 C -0.139 4.139 5 C -0.138 4.138 6 C 0.023 3.977 7 H 0.070 0.930 8 O -0.270 6.270 9 C 0.035 3.965 10 H 0.174 0.826 11 C 0.318 3.682 12 O -0.430 6.430 13 O -0.317 6.317 14 C -0.162 4.162 15 C -0.074 4.074 16 H 0.083 0.917 17 N -0.241 5.241 18 C 0.084 3.916 19 C -0.562 4.562 20 H 0.085 0.915 21 C -0.192 4.192 22 N -0.571 5.571 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.191 1.191 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.292 0.708 35 H 0.121 0.879 36 H 0.091 0.909 37 H -0.008 1.008 38 H 0.022 0.978 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.056 -10.663 -7.255 12.897 hybrid contribution -0.063 0.794 0.944 1.236 sum -0.007 -9.868 -6.310 11.713 Atomic orbital electron populations 1.22336 0.97532 1.01372 1.01881 1.21787 0.93289 0.98941 0.89416 0.90548 1.21350 1.01781 0.93893 0.96898 1.21172 1.01775 0.95310 0.95586 1.22433 0.98819 0.79465 0.97000 0.93038 1.88328 1.93085 1.25627 1.19910 1.22750 0.95689 0.95903 0.82150 0.82602 1.23925 0.87062 0.77039 0.80181 1.90703 1.42713 1.53770 1.55764 1.84489 1.51744 1.68347 1.27099 1.22732 1.03709 0.90991 0.98810 1.23181 0.98055 0.90982 0.95146 0.91683 1.62825 1.57547 1.00243 1.03474 1.19337 0.92055 0.92832 0.87386 1.21562 1.38758 0.92873 1.03037 0.91493 1.25793 0.95092 1.03416 0.94875 1.70071 1.42926 1.36555 1.07545 0.85521 0.78810 0.79796 0.77353 1.19899 1.21168 1.19072 0.94703 0.90817 0.92284 0.88318 0.91743 0.89699 0.90328 0.70779 0.87910 0.90853 1.00781 0.97820 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.77 8.16 71.98 0.59 -5.19 16 2 C 0.07 2.61 2.51 44.65 0.11 2.72 16 3 H 0.08 3.06 5.76 -2.38 -0.01 3.05 16 4 C -0.10 -2.75 5.40 30.24 0.16 -2.58 16 5 C -0.10 -2.61 5.64 29.88 0.17 -2.44 16 6 C 0.08 2.53 2.98 30.93 0.09 2.62 16 7 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 8 O -0.35 -10.84 10.58 -130.01 -1.38 -12.22 16 9 C 0.09 2.51 4.04 30.66 0.12 2.63 16 10 H 0.16 3.10 8.14 -2.39 -0.02 3.08 16 11 C 0.48 12.96 7.55 71.24 0.54 13.50 16 12 O -0.54 -18.49 17.28 28.31 0.49 -18.00 16 13 O -0.50 -10.13 13.42 -51.47 -0.69 -10.82 16 14 C -0.12 -3.85 5.62 31.68 0.18 -3.68 16 15 C 0.04 1.23 1.91 46.24 0.09 1.32 16 16 H 0.07 2.19 5.89 -2.39 -0.01 2.18 16 17 N -0.52 -20.91 4.79 -845.95 -4.05 -24.97 16 18 C 0.21 10.47 3.99 85.55 0.34 10.81 16 19 C -0.52 -28.11 8.26 25.60 0.21 -27.90 16 20 H 0.07 3.51 5.90 -2.91 -0.02 3.49 16 21 C 0.01 0.37 5.46 84.66 0.46 0.83 16 22 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 23 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H 0.03 1.42 6.51 -2.39 -0.02 1.40 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.80 4.93 -2.39 -0.01 1.79 16 30 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 33 H 0.08 1.90 6.90 -2.39 -0.02 1.88 16 34 H 0.43 4.75 9.10 -74.06 -0.67 4.08 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 2.51 7.88 -2.39 -0.02 2.50 16 37 H -0.03 -1.37 6.87 -2.39 -0.02 -1.38 16 38 H 0.00 0.21 7.83 -2.39 -0.02 0.19 16 39 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 Total: -1.00 -67.72 304.58 0.14 -67.57 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.40 Total: 14.59 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 3.07 Total: -7.35 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.77 Total: -78.83 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.58 Total: -41.04 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.72 0.14 -67.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604710039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.327 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds