Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46783 * 2 1 4 4 C 1.50698 * 109.47137 * 240.00242 * 2 1 3 5 5 H 1.08004 * 120.00280 * 239.99908 * 4 2 1 6 6 C 1.37880 * 120.00218 * 59.99897 * 4 2 1 7 7 N 1.31520 * 119.99511 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00315 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46865 * 59.99953 * 8 6 4 10 10 H 1.48500 * 109.47457 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46961 * 300.00307 * 8 6 4 12 12 C 1.50693 * 109.47282 * 120.00273 * 2 1 3 13 13 O 1.21279 * 120.00248 * 102.28869 * 12 2 1 14 14 N 1.34776 * 119.99972 * 282.29189 * 12 2 1 15 15 C 1.47001 * 120.61430 * 4.93429 * 14 12 2 16 16 C 1.53198 * 108.73853 * 126.39253 * 15 14 12 17 17 C 1.53036 * 109.33877 * 54.62079 * 16 15 14 18 18 H 1.09004 * 109.46028 * 58.64428 * 17 16 15 19 19 C 1.52999 * 109.45708 * 178.59768 * 17 16 15 20 20 C 1.53035 * 109.54067 * 298.62003 * 17 16 15 21 21 C 1.46926 * 120.63288 * 184.91517 * 14 12 2 22 22 H 1.09003 * 109.70249 * 113.77228 * 21 14 12 23 23 C 1.50697 * 109.58727 * 353.41327 * 21 14 12 24 24 O 1.20825 * 119.99918 * 293.85912 * 23 21 14 25 25 O 1.34229 * 119.99947 * 113.85480 * 23 21 14 26 26 H 1.08996 * 109.47352 * 305.74783 * 1 2 3 27 27 H 1.08998 * 109.47379 * 65.75519 * 1 2 3 28 28 H 1.09002 * 109.47207 * 185.75025 * 1 2 3 29 29 H 0.97008 * 119.99675 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.62838 * 6.60003 * 15 14 12 31 31 H 1.09000 * 109.58039 * 246.14932 * 15 14 12 32 32 H 1.09001 * 109.49025 * 294.65449 * 16 15 14 33 33 H 1.09004 * 109.49434 * 174.59108 * 16 15 14 34 34 H 1.08999 * 109.46960 * 60.00327 * 19 17 16 35 35 H 1.09007 * 109.47243 * 179.97438 * 19 17 16 36 36 H 1.08997 * 109.47358 * 299.99881 * 19 17 16 37 37 H 1.08999 * 109.50198 * 181.31885 * 20 17 16 38 38 H 1.09006 * 109.50062 * 301.41503 * 20 17 16 39 39 H 0.96700 * 117.00426 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0082 10 1 1.8269 -0.4197 -5.2205 11 1 3.8075 -1.1188 -4.0077 12 6 2.0323 -0.7104 1.2304 13 8 2.4453 -1.8478 1.1478 14 7 2.0227 -0.0819 2.4226 15 6 1.4267 1.2549 2.5593 16 6 0.3938 1.2199 3.6902 17 6 1.0561 0.6931 4.9653 18 1 1.8952 1.3361 5.2309 19 6 0.0359 0.6900 6.1055 20 6 1.5607 -0.7321 4.7287 21 6 2.6072 -0.7200 3.6100 22 1 3.4831 -0.1586 3.9352 23 6 3.0081 -2.1342 3.2778 24 8 2.1626 -2.9548 3.0103 25 8 4.3045 -2.4822 3.2792 26 1 -0.3634 0.6003 0.8340 27 1 -0.3634 0.4220 -0.9370 28 1 -0.3634 -1.0225 0.1030 29 1 0.7086 1.1614 -3.4844 30 1 0.9378 1.5350 1.6262 31 1 2.2054 1.9793 2.7980 32 1 -0.4300 0.5634 3.4101 33 1 0.0135 2.2261 3.8666 34 1 -0.8037 0.0477 5.8400 35 1 0.5072 0.3144 7.0138 36 1 -0.3227 1.7053 6.2750 37 1 2.0113 -1.1153 5.6442 38 1 0.7258 -1.3703 4.4389 39 1 4.5128 -3.4005 3.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604741362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -153.855015 kcal Electronic energy + Delta-G solvation = -22239.622082 eV Core-core repulsion = 18953.102176 eV Total energy + Delta-G solvation = -3286.519907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.13058 -40.14337 -38.71904 -36.94722 -35.90599 -34.89687 -33.13569 -31.83442 -29.25025 -27.30786 -26.13502 -24.74754 -24.07687 -22.27896 -21.45540 -19.77963 -19.06558 -18.41507 -17.94571 -17.31722 -16.96460 -16.65406 -16.06797 -15.77040 -15.40598 -14.93826 -14.84492 -14.72552 -14.35388 -14.19820 -13.86996 -13.28483 -13.05688 -12.86430 -12.79146 -12.67606 -12.56855 -12.42651 -12.35147 -12.25003 -12.09274 -11.97347 -11.61743 -11.36944 -11.21145 -11.10876 -10.59665 -10.20341 -9.67643 -8.18556 -6.29101 1.21454 1.38066 1.40004 1.48516 1.75695 2.13207 2.18302 2.43713 3.10607 3.64782 3.78713 3.89665 4.00978 4.12164 4.16461 4.41567 4.45911 4.60630 4.68376 4.71820 4.75484 4.87847 4.91342 4.97892 4.99330 5.04787 5.14041 5.21727 5.37840 5.42148 5.54331 5.55247 5.68978 5.76665 5.89315 6.13526 6.44021 6.75813 7.07582 7.33766 7.41129 8.86835 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.006538 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.538371 B = 4281.823698 C = 5194.326940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.037 3.963 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.283 1.283 10 H -0.270 1.270 11 H -0.274 1.274 12 C 0.512 3.488 13 O -0.562 6.562 14 N -0.610 5.610 15 C 0.099 3.901 16 C -0.128 4.128 17 C -0.082 4.082 18 H 0.100 0.900 19 C -0.141 4.141 20 C -0.111 4.111 21 C 0.149 3.851 22 H 0.125 0.875 23 C 0.488 3.512 24 O -0.543 6.543 25 O -0.519 6.519 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.009 0.991 29 H 0.267 0.733 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 5.190 17.579 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.199 1.199 12 C 0.303 3.697 13 O -0.442 6.442 14 N -0.347 5.347 15 C -0.022 4.022 16 C -0.166 4.166 17 C -0.100 4.100 18 H 0.118 0.882 19 C -0.198 4.198 20 C -0.149 4.149 21 C 0.045 3.955 22 H 0.142 0.858 23 C 0.332 3.668 24 O -0.432 6.432 25 O -0.332 6.332 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 0.639 4.898 17.420 18.107 hybrid contribution 0.405 -1.571 -1.463 2.184 sum 1.043 3.328 15.957 16.334 Atomic orbital electron populations 1.21619 0.95342 0.98337 1.02496 1.18721 0.94949 0.96029 0.88692 0.93343 1.21185 1.31975 1.12492 0.91308 0.94145 1.25535 0.95122 0.95727 1.01187 1.69910 1.36759 1.23312 1.24528 0.85681 0.78802 0.78514 0.79039 1.20849 1.19453 1.19925 1.21933 0.76153 0.86022 0.85564 1.90547 1.49010 1.19960 1.84635 1.48393 1.60354 1.19922 1.06069 1.22196 0.97320 0.81325 1.01319 1.22045 0.97245 1.03425 0.93846 1.21115 0.99690 0.93910 0.95316 0.88206 1.21773 0.98109 1.02768 0.97174 1.21975 0.96957 0.99887 0.96125 1.20959 0.99204 0.87483 0.87834 0.85772 1.23123 0.80264 0.91636 0.71775 1.90653 1.53012 1.54413 1.45134 1.84384 1.27793 1.38125 1.82866 0.92664 0.90455 0.97187 0.92370 0.89369 0.88568 0.93132 0.87270 0.93742 0.91499 0.90718 0.88181 0.93062 0.72090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.73 71.98 0.63 -5.13 16 2 C 0.04 1.90 1.77 -12.29 -0.02 1.88 16 3 H 0.05 2.47 7.19 -2.39 -0.02 2.45 16 4 C -0.53 -31.48 8.35 25.60 0.21 -31.26 16 5 H 0.04 2.58 6.90 -2.91 -0.02 2.56 16 6 C 0.02 1.35 5.29 84.65 0.45 1.80 16 7 N -0.91 -50.68 11.29 21.45 0.24 -50.43 16 8 Si 0.95 45.56 29.54 68.60 2.03 47.58 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 12 C 0.51 24.67 6.76 87.65 0.59 25.27 16 13 O -0.56 -31.35 11.17 23.02 0.26 -31.10 16 14 N -0.61 -21.77 2.97 -798.99 -2.38 -24.14 16 15 C 0.10 2.62 5.81 86.35 0.50 3.13 16 16 C -0.13 -2.56 5.36 30.67 0.16 -2.39 16 17 C -0.08 -1.37 2.68 -10.77 -0.03 -1.40 16 18 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 19 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 20 C -0.11 -2.59 4.57 30.67 0.14 -2.45 16 21 C 0.15 4.50 3.35 44.23 0.15 4.65 16 22 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 23 C 0.49 18.49 4.90 71.24 0.35 18.84 16 24 O -0.54 -25.35 15.26 29.83 0.46 -24.89 16 25 O -0.52 -16.68 13.42 -49.07 -0.66 -17.34 16 26 H 0.05 2.17 6.23 -2.39 -0.01 2.16 16 27 H 0.08 4.02 5.94 -2.39 -0.01 4.01 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 29 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 30 H 0.09 2.70 4.35 -2.39 -0.01 2.68 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.52 7.85 -2.38 -0.02 1.50 16 39 H 0.42 10.70 9.10 -74.06 -0.67 10.02 16 Total: -1.00 -77.25 309.01 4.13 -73.12 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.39 Total: 15.50 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 3.80 Total: 11.71 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.13 Total: -74.58 kcal Atomic # 8 Polarization: -73.39 SS G_CDS: 0.05 Total: -73.33 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -77.25 4.13 -73.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604741362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.736 kcal (2) G-P(sol) polarization free energy of solvation -77.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds