Wall clock time and date at job start Mon Mar 30 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46742 * 2 1 4 4 C 1.50694 * 109.47279 * 239.99910 * 2 1 3 5 5 H 1.08002 * 119.99708 * 240.00010 * 4 2 1 6 6 C 1.37879 * 120.00342 * 59.99835 * 4 2 1 7 7 N 1.31514 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47149 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47274 * 119.99813 * 8 6 4 11 11 H 1.48500 * 109.46840 * 240.00098 * 8 6 4 12 12 C 1.50699 * 109.47282 * 119.99401 * 2 1 3 13 13 O 1.21280 * 119.99983 * 87.01436 * 12 2 1 14 14 N 1.34777 * 120.00036 * 267.02194 * 12 2 1 15 15 C 1.46930 * 120.63252 * 6.10716 * 14 12 2 16 16 C 1.53197 * 108.77212 * 233.58924 * 15 14 12 17 17 C 1.53033 * 109.31400 * 305.36154 * 16 15 14 18 18 H 1.08999 * 109.46007 * 181.37620 * 17 16 15 19 19 C 1.53008 * 109.46300 * 301.34992 * 17 16 15 20 20 C 1.53044 * 109.53732 * 61.36860 * 17 16 15 21 21 C 1.46925 * 120.62868 * 185.83215 * 14 12 2 22 22 H 1.08998 * 109.58385 * 246.19652 * 21 14 12 23 23 C 1.50703 * 109.58793 * 6.61868 * 21 14 12 24 24 O 1.20820 * 119.99631 * 63.47591 * 23 21 14 25 25 O 1.34226 * 120.00251 * 243.47190 * 23 21 14 26 26 H 1.09002 * 109.46966 * 293.66392 * 1 2 3 27 27 H 1.09004 * 109.46673 * 173.66206 * 1 2 3 28 28 H 1.09004 * 109.46803 * 53.66628 * 1 2 3 29 29 H 0.96996 * 119.99973 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.58472 * 353.37349 * 15 14 12 31 31 H 1.08997 * 109.58514 * 113.65918 * 15 14 12 32 32 H 1.08996 * 109.49718 * 65.31759 * 16 15 14 33 33 H 1.09005 * 109.49013 * 185.38039 * 16 15 14 34 34 H 1.08998 * 109.46598 * 59.99615 * 19 17 16 35 35 H 1.08997 * 109.46923 * 179.97438 * 19 17 16 36 36 H 1.09001 * 109.46566 * 300.00318 * 19 17 16 37 37 H 1.08994 * 109.49568 * 58.58423 * 20 17 16 38 38 H 1.08999 * 109.49723 * 178.65269 * 20 17 16 39 39 H 0.96700 * 116.99809 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1663 -1.5870 -4.8159 11 1 3.1468 -0.1875 -4.8164 12 6 2.0324 -0.7103 1.2305 13 8 2.1830 -1.9136 1.2171 14 7 2.3142 -0.0083 2.3460 15 6 2.0120 1.4275 2.4233 16 6 3.2847 2.1781 2.8280 17 6 3.8337 1.5807 4.1255 18 1 4.7257 2.1289 4.4287 19 6 2.7733 1.6852 5.2236 20 6 4.1915 0.1098 3.9005 21 6 2.9240 -0.6655 3.5100 22 1 2.2197 -0.6624 4.3418 23 6 3.2864 -2.0849 3.1564 24 8 4.1116 -2.3025 2.3012 25 8 2.6925 -3.1074 3.7916 26 1 -0.3633 0.4125 0.9413 27 1 -0.3633 -1.0214 -0.1135 28 1 -0.3633 0.6089 -0.8279 29 1 0.7090 1.1612 -3.4845 30 1 1.6723 1.7823 1.4503 31 1 1.2331 1.5975 3.1665 32 1 4.0304 2.0817 2.0389 33 1 3.0521 3.2319 2.9819 34 1 1.8811 1.1375 4.9202 35 1 3.1641 1.2593 6.1477 36 1 2.5193 2.7328 5.3847 37 1 4.9286 0.0328 3.1013 38 1 4.6047 -0.3086 4.8182 39 1 2.9580 -3.9999 3.5308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604741364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:21 Heat of formation + Delta-G solvation = -129.159155 kcal Electronic energy + Delta-G solvation = -22394.825339 eV Core-core repulsion = 19109.376325 eV Total energy + Delta-G solvation = -3285.449014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73825 -38.67667 -37.50275 -35.48833 -33.86330 -33.27825 -31.57235 -30.16580 -27.68824 -25.45285 -25.18163 -23.85256 -22.77987 -20.97763 -19.57071 -17.91876 -17.69580 -16.70810 -16.26417 -15.83302 -15.39286 -14.85315 -14.76401 -14.51680 -14.19997 -13.74866 -13.58581 -13.05527 -12.83461 -12.68042 -12.30127 -12.00597 -11.74386 -11.52725 -11.23497 -11.04443 -10.98736 -10.89544 -10.78899 -10.63915 -10.52990 -10.47199 -10.24883 -10.03278 -9.83178 -8.98287 -8.61419 -8.32935 -8.16811 -6.05878 -4.08055 2.67107 3.31813 3.32782 3.39375 3.47755 3.60785 3.67982 4.46513 4.70339 4.76599 4.86818 5.08490 5.17877 5.27658 5.37808 5.49639 5.56300 5.61267 5.70913 5.77895 5.86012 5.92773 6.00790 6.12225 6.16334 6.22862 6.40234 6.63223 6.80150 6.88051 6.95276 7.08328 7.40032 7.72838 7.89251 8.02176 8.30133 8.47809 8.97115 9.08221 9.56348 11.02090 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.006855 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.576450 B = 4083.660655 C = 4742.910341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.522 6.522 14 N -0.617 5.617 15 C 0.109 3.891 16 C -0.134 4.134 17 C -0.087 4.087 18 H 0.076 0.924 19 C -0.155 4.155 20 C -0.118 4.118 21 C 0.155 3.845 22 H 0.093 0.907 23 C 0.493 3.507 24 O -0.500 6.500 25 O -0.524 6.524 26 H 0.011 0.989 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.261 0.739 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 3.785 15.369 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.017 3.983 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.315 3.685 13 O -0.398 6.398 14 N -0.356 5.356 15 C -0.013 4.013 16 C -0.172 4.172 17 C -0.106 4.106 18 H 0.095 0.905 19 C -0.212 4.212 20 C -0.157 4.157 21 C 0.050 3.950 22 H 0.110 0.890 23 C 0.335 3.665 24 O -0.386 6.386 25 O -0.336 6.336 26 H 0.030 0.970 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.561 3.561 15.066 15.691 hybrid contribution 0.455 -0.970 -0.990 1.459 sum 3.016 2.591 14.076 14.626 Atomic orbital electron populations 1.21704 0.95958 1.01271 0.99680 1.18903 0.94293 0.96526 0.88619 0.93216 1.21073 1.31154 1.12454 0.88985 0.91374 1.24908 0.95024 0.95036 0.99029 1.69879 1.37040 1.23014 1.23524 0.86396 0.78664 0.79827 0.82412 1.19593 1.20934 1.20983 1.22240 0.74504 0.87913 0.83836 1.90511 1.52530 1.15511 1.81211 1.48464 1.63716 1.10037 1.13387 1.21858 0.96515 0.79107 1.03863 1.21999 0.98431 0.99418 0.97386 1.21062 0.98954 0.94890 0.95680 0.90549 1.21988 0.99264 1.01963 0.97973 1.21978 0.96098 0.95251 1.02338 1.20590 0.96762 0.86866 0.90737 0.88961 1.22441 0.78639 0.87319 0.78095 1.90704 1.34281 1.85116 1.28532 1.84400 1.66245 1.18843 1.64096 0.96990 0.94414 0.88983 0.92947 0.87654 0.91580 0.90845 0.90559 0.92041 0.92686 0.92365 0.90010 0.90770 0.73626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.86 37.16 0.33 -2.70 16 2 C 0.04 0.94 1.87 -92.92 -0.17 0.77 16 3 H 0.05 1.24 6.07 -51.92 -0.32 0.93 16 4 C -0.50 -14.40 8.31 -34.44 -0.29 -14.68 16 5 H 0.07 2.12 7.21 -52.49 -0.38 1.75 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -25.02 11.39 55.43 0.63 -24.39 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.36 6.43 -10.99 -0.07 12.29 16 13 O -0.52 -13.96 11.89 -21.82 -0.26 -14.22 16 14 N -0.62 -11.34 2.97 -166.28 -0.49 -11.83 16 15 C 0.11 1.58 5.83 -3.71 -0.02 1.56 16 16 C -0.13 -1.61 5.62 -26.61 -0.15 -1.76 16 17 C -0.09 -0.92 3.19 -90.58 -0.29 -1.21 16 18 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.15 -1.38 8.44 37.16 0.31 -1.07 16 20 C -0.12 -1.54 4.87 -26.39 -0.13 -1.67 16 21 C 0.16 2.49 2.89 -68.53 -0.20 2.30 16 22 H 0.09 1.28 6.68 -51.93 -0.35 0.93 16 23 C 0.49 9.41 4.79 36.01 0.17 9.58 16 24 O -0.50 -11.55 15.49 -26.84 -0.42 -11.96 16 25 O -0.52 -8.47 13.42 -42.10 -0.57 -9.03 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.09 2.32 6.27 -51.93 -0.33 2.00 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.11 1.71 5.39 -51.93 -0.28 1.43 16 31 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.60 4.97 -51.93 -0.26 0.35 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.41 5.10 9.10 45.56 0.41 5.52 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -34.41 306.18 -6.87 -41.28 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.76 Total: 3.38 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.60 Total: 5.01 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.14 Total: -36.22 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.24 Total: -35.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.41 -6.87 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604741364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.877 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds