Wall clock time and date at job start Mon Mar 30 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46742 * 2 1 4 4 C 1.50694 * 109.47279 * 239.99910 * 2 1 3 5 5 H 1.08002 * 119.99708 * 240.00010 * 4 2 1 6 6 C 1.37879 * 120.00342 * 59.99835 * 4 2 1 7 7 N 1.31514 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47149 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47274 * 119.99813 * 8 6 4 11 11 H 1.48500 * 109.46840 * 240.00098 * 8 6 4 12 12 C 1.50699 * 109.47282 * 119.99401 * 2 1 3 13 13 O 1.21280 * 119.99983 * 87.01436 * 12 2 1 14 14 N 1.34777 * 120.00036 * 267.02194 * 12 2 1 15 15 C 1.46930 * 120.63252 * 6.10716 * 14 12 2 16 16 C 1.53197 * 108.77212 * 233.58924 * 15 14 12 17 17 C 1.53033 * 109.31400 * 305.36154 * 16 15 14 18 18 H 1.08999 * 109.46007 * 181.37620 * 17 16 15 19 19 C 1.53008 * 109.46300 * 301.34992 * 17 16 15 20 20 C 1.53044 * 109.53732 * 61.36860 * 17 16 15 21 21 C 1.46925 * 120.62868 * 185.83215 * 14 12 2 22 22 H 1.08998 * 109.58385 * 246.19652 * 21 14 12 23 23 C 1.50703 * 109.58793 * 6.61868 * 21 14 12 24 24 O 1.20820 * 119.99631 * 63.47591 * 23 21 14 25 25 O 1.34226 * 120.00251 * 243.47190 * 23 21 14 26 26 H 1.09002 * 109.46966 * 293.66392 * 1 2 3 27 27 H 1.09004 * 109.46673 * 173.66206 * 1 2 3 28 28 H 1.09004 * 109.46803 * 53.66628 * 1 2 3 29 29 H 0.96996 * 119.99973 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.58472 * 353.37349 * 15 14 12 31 31 H 1.08997 * 109.58514 * 113.65918 * 15 14 12 32 32 H 1.08996 * 109.49718 * 65.31759 * 16 15 14 33 33 H 1.09005 * 109.49013 * 185.38039 * 16 15 14 34 34 H 1.08998 * 109.46598 * 59.99615 * 19 17 16 35 35 H 1.08997 * 109.46923 * 179.97438 * 19 17 16 36 36 H 1.09001 * 109.46566 * 300.00318 * 19 17 16 37 37 H 1.08994 * 109.49568 * 58.58423 * 20 17 16 38 38 H 1.08999 * 109.49723 * 178.65269 * 20 17 16 39 39 H 0.96700 * 116.99809 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1663 -1.5870 -4.8159 11 1 3.1468 -0.1875 -4.8164 12 6 2.0324 -0.7103 1.2305 13 8 2.1830 -1.9136 1.2171 14 7 2.3142 -0.0083 2.3460 15 6 2.0120 1.4275 2.4233 16 6 3.2847 2.1781 2.8280 17 6 3.8337 1.5807 4.1255 18 1 4.7257 2.1289 4.4287 19 6 2.7733 1.6852 5.2236 20 6 4.1915 0.1098 3.9005 21 6 2.9240 -0.6655 3.5100 22 1 2.2197 -0.6624 4.3418 23 6 3.2864 -2.0849 3.1564 24 8 4.1116 -2.3025 2.3012 25 8 2.6925 -3.1074 3.7916 26 1 -0.3633 0.4125 0.9413 27 1 -0.3633 -1.0214 -0.1135 28 1 -0.3633 0.6089 -0.8279 29 1 0.7090 1.1612 -3.4845 30 1 1.6723 1.7823 1.4503 31 1 1.2331 1.5975 3.1665 32 1 4.0304 2.0817 2.0389 33 1 3.0521 3.2319 2.9819 34 1 1.8811 1.1375 4.9202 35 1 3.1641 1.2593 6.1477 36 1 2.5193 2.7328 5.3847 37 1 4.9286 0.0328 3.1013 38 1 4.6047 -0.3086 4.8182 39 1 2.9580 -3.9999 3.5308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604741364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:21 Heat of formation + Delta-G solvation = -152.369777 kcal Electronic energy + Delta-G solvation = -22395.831827 eV Core-core repulsion = 19109.376325 eV Total energy + Delta-G solvation = -3286.455502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19584 -40.17246 -38.92529 -36.96378 -35.88317 -34.64381 -33.03766 -31.93319 -28.66262 -27.31965 -26.64507 -25.09341 -24.46184 -22.41872 -20.96518 -19.37065 -18.99749 -18.49274 -18.07697 -17.35966 -16.88350 -16.64760 -16.09380 -15.77238 -15.64482 -15.05669 -14.90255 -14.60291 -14.33790 -14.24315 -13.75478 -13.48796 -13.02365 -12.92323 -12.80206 -12.72086 -12.63114 -12.34759 -12.28483 -12.17432 -12.13347 -11.84600 -11.68184 -11.47024 -11.28369 -11.04754 -10.63663 -10.24217 -9.60373 -8.21323 -6.30624 1.21148 1.34236 1.36158 1.49467 1.77411 2.09307 2.18427 2.41789 3.08169 3.63656 3.80026 3.90280 4.03944 4.09313 4.16980 4.37300 4.42927 4.55152 4.65072 4.72507 4.76860 4.87588 4.91593 4.97016 4.99130 5.08083 5.18862 5.29332 5.38031 5.41294 5.53350 5.58067 5.67433 5.75177 5.86392 6.11184 6.43170 6.72645 7.06298 7.31208 7.39112 8.85091 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.006855 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.576450 B = 4083.660655 C = 4742.910341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.031 0.969 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.952 3.048 9 H -0.287 1.287 10 H -0.271 1.271 11 H -0.268 1.268 12 C 0.516 3.484 13 O -0.566 6.566 14 N -0.610 5.610 15 C 0.100 3.900 16 C -0.131 4.131 17 C -0.080 4.080 18 H 0.099 0.901 19 C -0.151 4.151 20 C -0.114 4.114 21 C 0.151 3.849 22 H 0.126 0.874 23 C 0.488 3.512 24 O -0.549 6.549 25 O -0.516 6.516 26 H 0.047 0.953 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.267 0.733 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 5.532 17.392 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.015 3.985 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.050 0.950 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.778 3.222 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.193 1.193 12 C 0.308 3.692 13 O -0.445 6.445 14 N -0.347 5.347 15 C -0.020 4.020 16 C -0.169 4.169 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.208 4.208 20 C -0.153 4.153 21 C 0.047 3.953 22 H 0.143 0.857 23 C 0.333 3.667 24 O -0.439 6.439 25 O -0.328 6.328 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.206 5.355 17.134 18.086 hybrid contribution 0.568 -1.520 -1.557 2.249 sum 2.774 3.835 15.577 16.280 Atomic orbital electron populations 1.21502 0.94980 0.99792 1.00882 1.18796 0.95095 0.96081 0.88564 0.93247 1.21129 1.31968 1.12181 0.91472 0.95033 1.25490 0.95064 0.95707 1.01047 1.69925 1.36764 1.23165 1.24452 0.85604 0.78475 0.78539 0.79629 1.21288 1.19572 1.19347 1.21881 0.74949 0.87430 0.84979 1.90481 1.54551 1.17096 1.82397 1.48380 1.62255 1.11420 1.12635 1.22177 0.99006 0.76875 1.03990 1.22008 0.96351 1.01032 0.97502 1.21081 1.00586 0.92726 0.95440 0.88296 1.21968 0.98027 1.03251 0.97578 1.22031 0.93822 0.97070 1.02336 1.21031 0.98880 0.85175 0.90207 0.85676 1.23173 0.77551 0.88885 0.77133 1.90678 1.36412 1.86039 1.30796 1.84369 1.65502 1.19554 1.63409 0.93406 0.96446 0.90579 0.92317 0.89673 0.88098 0.93439 0.87306 0.92870 0.91208 0.90547 0.93163 0.88003 0.72076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.42 8.86 71.98 0.64 -4.78 16 2 C 0.04 1.83 1.87 -12.29 -0.02 1.81 16 3 H 0.05 2.53 6.07 -2.38 -0.01 2.51 16 4 C -0.53 -31.85 8.31 25.60 0.21 -31.64 16 5 H 0.03 2.09 7.21 -2.91 -0.02 2.06 16 6 C 0.03 1.54 5.30 84.66 0.45 1.98 16 7 N -0.90 -50.71 11.39 21.45 0.24 -50.46 16 8 Si 0.95 46.17 29.54 68.60 2.03 48.20 16 9 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.52 25.01 6.43 87.66 0.56 25.57 16 13 O -0.57 -31.51 11.89 23.15 0.28 -31.23 16 14 N -0.61 -22.02 2.97 -798.36 -2.37 -24.39 16 15 C 0.10 2.71 5.83 86.36 0.50 3.22 16 16 C -0.13 -2.80 5.62 30.67 0.17 -2.63 16 17 C -0.08 -1.39 3.19 -10.77 -0.03 -1.43 16 18 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 19 C -0.15 -1.94 8.44 71.98 0.61 -1.33 16 20 C -0.11 -2.75 4.87 30.82 0.15 -2.60 16 21 C 0.15 4.62 2.89 44.37 0.13 4.75 16 22 H 0.13 3.05 6.68 -2.39 -0.02 3.03 16 23 C 0.49 18.73 4.79 71.24 0.34 19.07 16 24 O -0.55 -26.39 15.49 29.72 0.46 -25.93 16 25 O -0.52 -16.40 13.42 -48.65 -0.65 -17.05 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 3.86 6.27 -2.39 -0.01 3.84 16 29 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.09 2.68 5.39 -2.39 -0.01 2.67 16 31 H 0.10 2.08 6.70 -2.39 -0.02 2.06 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 0.78 4.97 -2.39 -0.01 0.77 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.54 7.91 -2.39 -0.02 1.52 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.42 10.56 9.10 -74.06 -0.67 9.89 16 Total: -1.00 -78.34 306.18 4.09 -74.25 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.39 Total: 14.64 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 3.71 Total: 11.99 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.12 Total: -74.85 kcal Atomic # 8 Polarization: -74.30 SS G_CDS: 0.08 Total: -74.22 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.34 4.09 -74.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604741364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.122 kcal (2) G-P(sol) polarization free energy of solvation -78.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds