Wall clock time and date at job start Mon Mar 30 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47612 * 2 1 4 4 C 1.50697 * 109.47026 * 120.00602 * 2 1 3 5 5 H 1.08004 * 120.00595 * 120.00073 * 4 2 1 6 6 C 1.37879 * 119.99689 * 299.99417 * 4 2 1 7 7 N 1.31516 * 119.99715 * 180.02562 * 6 4 2 8 8 Si 1.86792 * 120.00127 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47194 * 89.99926 * 8 6 4 10 10 H 1.48503 * 109.47222 * 209.99907 * 8 6 4 11 11 H 1.48501 * 109.47331 * 329.99954 * 8 6 4 12 12 C 1.50701 * 109.47087 * 239.99950 * 2 1 3 13 13 O 1.21278 * 120.00462 * 285.08626 * 12 2 1 14 14 N 1.34781 * 119.99945 * 105.08233 * 12 2 1 15 15 C 1.46926 * 120.63010 * 352.58010 * 14 12 2 16 16 C 1.53197 * 108.77523 * 126.39021 * 15 14 12 17 17 C 1.53039 * 109.30872 * 54.63555 * 16 15 14 18 18 H 1.09005 * 109.44991 * 58.65108 * 17 16 15 19 19 C 1.53002 * 109.46062 * 178.61382 * 17 16 15 20 20 C 1.53044 * 109.54138 * 298.63487 * 17 16 15 21 21 C 1.46928 * 120.63201 * 172.58390 * 14 12 2 22 22 H 1.09003 * 109.58610 * 113.82031 * 21 14 12 23 23 C 1.50702 * 109.58330 * 353.39614 * 21 14 12 24 24 O 1.20821 * 120.00277 * 304.75172 * 23 21 14 25 25 O 1.34230 * 119.99603 * 124.75592 * 23 21 14 26 26 H 1.09002 * 109.46766 * 292.77071 * 1 2 3 27 27 H 1.09002 * 109.46844 * 52.77264 * 1 2 3 28 28 H 1.09003 * 109.47430 * 172.77168 * 1 2 3 29 29 H 0.97005 * 119.99486 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.58521 * 6.60714 * 15 14 12 31 31 H 1.08996 * 109.58795 * 246.18063 * 15 14 12 32 32 H 1.08998 * 109.49622 * 294.68900 * 16 15 14 33 33 H 1.08994 * 109.52552 * 174.60669 * 16 15 14 34 34 H 1.08996 * 109.47523 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47154 * 300.07376 * 19 17 16 36 36 H 1.09001 * 109.46476 * 60.07015 * 19 17 16 37 37 H 1.09000 * 109.49729 * 181.31327 * 20 17 16 38 38 H 1.08994 * 109.49735 * 301.41865 * 20 17 16 39 39 H 0.96704 * 116.99841 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6249 1.2789 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8472 2.1764 1.4921 12 6 2.0324 -0.7104 -1.2305 13 8 1.9768 -1.9201 -1.2975 14 7 2.5433 -0.0015 -2.2565 15 6 2.4704 1.4660 -2.2622 16 6 3.8793 2.0289 -2.4743 17 6 4.4797 1.4245 -3.7456 18 1 3.8398 1.6590 -4.5963 19 6 5.8736 2.0104 -3.9796 20 6 4.5847 -0.0944 -3.5901 21 6 3.1838 -0.6813 -3.3907 22 1 2.5908 -0.5260 -4.2920 23 6 3.2906 -2.1563 -3.1006 24 8 3.8431 -2.5359 -2.0954 25 8 2.7718 -3.0483 -3.9591 26 1 -0.3633 0.3978 0.9476 27 1 -0.3633 0.6217 -0.8183 28 1 -0.3634 -1.0195 -0.1293 29 1 1.9040 -0.5276 4.4375 30 1 2.0769 1.8160 -1.3079 31 1 1.8193 1.7963 -3.0715 32 1 4.5055 1.7737 -1.6194 33 1 3.8270 3.1128 -2.5763 34 1 6.3012 1.5804 -4.8852 35 1 5.7990 3.0922 -4.0903 36 1 6.5138 1.7755 -3.1292 37 1 5.0339 -0.5217 -4.4866 38 1 5.2042 -0.3295 -2.7246 39 1 2.8652 -3.9833 -3.7304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604741365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:23 Heat of formation + Delta-G solvation = -117.147165 kcal Electronic energy + Delta-G solvation = -22311.414125 eV Core-core repulsion = 19026.485990 eV Total energy + Delta-G solvation = -3284.928135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75165 -38.69821 -37.46297 -35.53283 -33.94872 -33.63565 -31.73785 -30.86147 -28.24966 -25.24879 -24.95052 -23.40873 -23.04805 -20.81208 -20.22803 -18.37334 -17.69983 -17.00879 -16.33982 -15.84787 -15.57535 -15.07504 -14.75632 -14.49907 -14.19478 -13.96614 -13.45448 -13.15120 -12.90970 -12.76125 -12.58117 -12.26548 -12.01332 -11.91983 -11.64148 -11.38909 -11.19764 -11.04734 -10.78407 -10.74483 -10.63889 -10.49828 -10.20024 -9.83642 -9.64530 -9.14117 -8.61313 -8.58954 -8.27319 -6.07407 -4.07702 2.62237 3.19681 3.22352 3.27754 3.34578 3.49091 3.60790 4.35082 4.66385 4.68726 4.77005 4.98723 5.15881 5.20269 5.33494 5.45489 5.51625 5.54089 5.57548 5.67877 5.75153 5.78153 5.93376 5.96607 6.07113 6.10345 6.17081 6.34563 6.39698 6.47547 6.67998 6.80157 7.02704 7.12642 7.53560 7.86517 8.43396 8.49514 8.97545 9.05541 9.49687 11.05592 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007387 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.318540 B = 3789.459074 C = 4535.925090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.002 3.998 3 H 0.048 0.952 4 C -0.502 4.502 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.266 1.266 12 C 0.533 3.467 13 O -0.514 6.514 14 N -0.619 5.619 15 C 0.108 3.892 16 C -0.136 4.136 17 C -0.087 4.087 18 H 0.073 0.927 19 C -0.145 4.145 20 C -0.120 4.120 21 C 0.159 3.841 22 H 0.093 0.907 23 C 0.485 3.515 24 O -0.481 6.481 25 O -0.526 6.526 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 7.514 -17.427 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 H 0.065 0.935 4 C -0.540 4.540 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.191 1.191 12 C 0.325 3.675 13 O -0.388 6.388 14 N -0.358 5.358 15 C -0.014 4.014 16 C -0.174 4.174 17 C -0.106 4.106 18 H 0.092 0.908 19 C -0.203 4.203 20 C -0.158 4.158 21 C 0.054 3.946 22 H 0.111 0.889 23 C 0.326 3.674 24 O -0.365 6.365 25 O -0.338 6.338 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.749 7.128 -17.036 18.670 hybrid contribution -0.552 0.165 0.422 0.714 sum 2.197 7.293 -16.614 18.277 Atomic orbital electron populations 1.22081 0.96837 1.01536 0.99575 1.19378 0.93455 0.97145 0.91982 0.93483 1.20752 1.32304 1.13691 0.87222 0.89805 1.24964 0.95776 0.96703 0.95616 1.69889 1.45264 1.40066 0.97883 0.86881 0.80764 0.83561 0.77157 1.20414 1.22208 1.19149 1.21423 0.75229 0.87833 0.83033 1.90611 1.54600 1.14672 1.78951 1.48325 1.60200 1.06978 1.20321 1.21865 0.96990 0.78781 1.03805 1.22061 0.96826 1.00141 0.98353 1.21079 0.97439 0.93773 0.98290 0.90827 1.21808 0.96127 1.00605 1.01735 1.21962 0.94532 0.95918 1.03381 1.20432 0.96189 0.86458 0.91498 0.88950 1.22472 0.75785 0.88806 0.80372 1.90778 1.40797 1.80367 1.24584 1.84399 1.75524 1.21488 1.52421 0.92955 0.94904 0.92124 0.92481 0.87929 0.91606 0.90616 0.90543 0.92700 0.92435 0.92392 0.90515 0.89983 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.67 37.16 0.32 -2.80 16 2 C 0.00 0.04 1.77 -92.92 -0.16 -0.12 16 3 H 0.05 1.05 4.58 -51.93 -0.24 0.81 16 4 C -0.50 -14.81 8.91 -34.44 -0.31 -15.11 16 5 H 0.08 2.87 7.74 -52.48 -0.41 2.46 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -27.89 13.96 55.43 0.77 -27.12 16 8 Si 0.89 21.36 24.42 -169.99 -4.15 17.20 16 9 H -0.28 -6.52 6.82 56.52 0.39 -6.14 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -5.84 6.53 56.52 0.37 -5.47 16 12 C 0.53 12.25 6.13 -10.98 -0.07 12.18 16 13 O -0.51 -13.55 12.07 -19.67 -0.24 -13.79 16 14 N -0.62 -10.95 2.97 -166.53 -0.49 -11.44 16 15 C 0.11 1.46 6.32 -3.71 -0.02 1.44 16 16 C -0.14 -1.55 5.36 -26.61 -0.14 -1.69 16 17 C -0.09 -0.88 2.68 -90.58 -0.24 -1.12 16 18 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 20 C -0.12 -1.50 4.62 -26.61 -0.12 -1.62 16 21 C 0.16 2.45 3.34 -68.75 -0.23 2.22 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 23 C 0.49 9.01 5.14 36.01 0.19 9.19 16 24 O -0.48 -11.21 14.99 -27.08 -0.41 -11.61 16 25 O -0.53 -8.03 13.42 -39.32 -0.53 -8.55 16 26 H 0.05 1.18 3.22 -51.93 -0.17 1.01 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 29 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.10 1.51 5.20 -51.93 -0.27 1.24 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.41 4.80 9.10 45.56 0.41 5.22 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -36.82 305.64 -5.91 -42.73 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.92 Total: 4.32 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.55 Total: 3.65 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.28 Total: -38.56 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.17 Total: -33.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.82 -5.91 -42.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604741365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.420 kcal (2) G-P(sol) polarization free energy of solvation -36.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds