Wall clock time and date at job start Mon Mar 30 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47612 * 2 1 4 4 C 1.50697 * 109.47026 * 120.00602 * 2 1 3 5 5 H 1.08004 * 120.00595 * 120.00073 * 4 2 1 6 6 C 1.37879 * 119.99689 * 299.99417 * 4 2 1 7 7 N 1.31516 * 119.99715 * 180.02562 * 6 4 2 8 8 Si 1.86792 * 120.00127 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.47194 * 89.99926 * 8 6 4 10 10 H 1.48503 * 109.47222 * 209.99907 * 8 6 4 11 11 H 1.48501 * 109.47331 * 329.99954 * 8 6 4 12 12 C 1.50701 * 109.47087 * 239.99950 * 2 1 3 13 13 O 1.21278 * 120.00462 * 285.08626 * 12 2 1 14 14 N 1.34781 * 119.99945 * 105.08233 * 12 2 1 15 15 C 1.46926 * 120.63010 * 352.58010 * 14 12 2 16 16 C 1.53197 * 108.77523 * 126.39021 * 15 14 12 17 17 C 1.53039 * 109.30872 * 54.63555 * 16 15 14 18 18 H 1.09005 * 109.44991 * 58.65108 * 17 16 15 19 19 C 1.53002 * 109.46062 * 178.61382 * 17 16 15 20 20 C 1.53044 * 109.54138 * 298.63487 * 17 16 15 21 21 C 1.46928 * 120.63201 * 172.58390 * 14 12 2 22 22 H 1.09003 * 109.58610 * 113.82031 * 21 14 12 23 23 C 1.50702 * 109.58330 * 353.39614 * 21 14 12 24 24 O 1.20821 * 120.00277 * 304.75172 * 23 21 14 25 25 O 1.34230 * 119.99603 * 124.75592 * 23 21 14 26 26 H 1.09002 * 109.46766 * 292.77071 * 1 2 3 27 27 H 1.09002 * 109.46844 * 52.77264 * 1 2 3 28 28 H 1.09003 * 109.47430 * 172.77168 * 1 2 3 29 29 H 0.97005 * 119.99486 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.58521 * 6.60714 * 15 14 12 31 31 H 1.08996 * 109.58795 * 246.18063 * 15 14 12 32 32 H 1.08998 * 109.49622 * 294.68900 * 16 15 14 33 33 H 1.08994 * 109.52552 * 174.60669 * 16 15 14 34 34 H 1.08996 * 109.47523 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47154 * 300.07376 * 19 17 16 36 36 H 1.09001 * 109.46476 * 60.07015 * 19 17 16 37 37 H 1.09000 * 109.49729 * 181.31327 * 20 17 16 38 38 H 1.08994 * 109.49735 * 301.41865 * 20 17 16 39 39 H 0.96704 * 116.99841 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6249 1.2789 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9949 3.9069 11 1 0.8472 2.1764 1.4921 12 6 2.0324 -0.7104 -1.2305 13 8 1.9768 -1.9201 -1.2975 14 7 2.5433 -0.0015 -2.2565 15 6 2.4704 1.4660 -2.2622 16 6 3.8793 2.0289 -2.4743 17 6 4.4797 1.4245 -3.7456 18 1 3.8398 1.6590 -4.5963 19 6 5.8736 2.0104 -3.9796 20 6 4.5847 -0.0944 -3.5901 21 6 3.1838 -0.6813 -3.3907 22 1 2.5908 -0.5260 -4.2920 23 6 3.2906 -2.1563 -3.1006 24 8 3.8431 -2.5359 -2.0954 25 8 2.7718 -3.0483 -3.9591 26 1 -0.3633 0.3978 0.9476 27 1 -0.3633 0.6217 -0.8183 28 1 -0.3634 -1.0195 -0.1293 29 1 1.9040 -0.5276 4.4375 30 1 2.0769 1.8160 -1.3079 31 1 1.8193 1.7963 -3.0715 32 1 4.5055 1.7737 -1.6194 33 1 3.8270 3.1128 -2.5763 34 1 6.3012 1.5804 -4.8852 35 1 5.7990 3.0922 -4.0903 36 1 6.5138 1.7755 -3.1292 37 1 5.0339 -0.5217 -4.4866 38 1 5.2042 -0.3295 -2.7246 39 1 2.8652 -3.9833 -3.7304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604741365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:23 Heat of formation + Delta-G solvation = -145.380421 kcal Electronic energy + Delta-G solvation = -22312.638411 eV Core-core repulsion = 19026.485990 eV Total energy + Delta-G solvation = -3286.152421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.17976 -40.17772 -38.77436 -36.98276 -35.89236 -34.89901 -33.47933 -32.35088 -29.28253 -27.24838 -26.19251 -24.97121 -24.22973 -22.20302 -21.32861 -19.80787 -19.17626 -18.88349 -18.08832 -17.32083 -17.01846 -16.69813 -16.15330 -15.86097 -15.45713 -15.03360 -14.86646 -14.59146 -14.47182 -14.21660 -14.12031 -13.81329 -13.53183 -12.90649 -12.85938 -12.71855 -12.63268 -12.43281 -12.29913 -12.13266 -12.06055 -11.67252 -11.50967 -11.44164 -11.30157 -11.11583 -10.78063 -10.31383 -9.66667 -8.32706 -6.41708 1.22608 1.31333 1.37515 1.50125 1.71183 2.05026 2.17770 2.30914 3.00384 3.64240 3.77540 3.87002 3.96932 4.01827 4.11717 4.29610 4.39707 4.46302 4.56731 4.65210 4.69981 4.71527 4.75436 4.88459 4.95236 4.97154 5.02757 5.13827 5.21992 5.36947 5.41761 5.46674 5.56178 5.56499 5.74059 6.13591 6.39091 6.66312 7.04951 7.19161 7.35590 8.85733 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.007387 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.318540 B = 3789.459074 C = 4535.925090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.001 4.001 3 H 0.075 0.925 4 C -0.519 4.519 5 H 0.007 0.993 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.294 1.294 11 H -0.219 1.219 12 C 0.523 3.477 13 O -0.564 6.564 14 N -0.612 5.612 15 C 0.096 3.904 16 C -0.134 4.134 17 C -0.080 4.080 18 H 0.107 0.893 19 C -0.143 4.143 20 C -0.115 4.115 21 C 0.155 3.845 22 H 0.135 0.865 23 C 0.481 3.519 24 O -0.542 6.542 25 O -0.514 6.514 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.269 0.731 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 11.738 -20.744 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.093 0.907 4 C -0.557 4.557 5 H 0.025 0.975 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.222 1.222 11 H -0.142 1.142 12 C 0.314 3.686 13 O -0.443 6.443 14 N -0.350 5.350 15 C -0.024 4.024 16 C -0.172 4.172 17 C -0.098 4.098 18 H 0.125 0.875 19 C -0.200 4.200 20 C -0.154 4.154 21 C 0.051 3.949 22 H 0.152 0.848 23 C 0.324 3.676 24 O -0.431 6.431 25 O -0.327 6.327 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 1.219 11.385 -20.441 23.429 hybrid contribution 0.044 -1.300 1.393 1.906 sum 1.263 10.086 -19.047 21.590 Atomic orbital electron populations 1.21987 0.94694 1.01442 1.01401 1.19333 0.95181 0.97597 0.90071 0.90736 1.20861 1.31992 1.12109 0.90737 0.97479 1.26120 0.97347 1.01182 0.94431 1.70097 1.47416 1.42860 0.98836 0.85647 0.78334 0.78553 0.78753 1.18897 1.22167 1.14162 1.21275 0.75874 0.87326 0.84131 1.90582 1.56876 1.16714 1.80122 1.48310 1.58444 1.08796 1.19422 1.22291 0.99251 0.75825 1.05024 1.22089 0.94937 1.02288 0.97900 1.21114 0.98907 0.91149 0.98649 0.87476 1.21790 0.94885 1.01800 1.01546 1.22013 0.92129 0.98338 1.02882 1.20902 0.98397 0.83991 0.91654 0.84772 1.23321 0.74156 0.90617 0.79482 1.90761 1.43462 1.81581 1.27271 1.84366 1.74539 1.22424 1.51385 0.93216 0.89769 0.94275 0.92206 0.89008 0.87006 0.93911 0.86940 0.91439 0.90548 0.94256 0.87867 0.93859 0.72043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.67 71.98 0.62 -5.10 16 2 C 0.00 -0.03 1.77 -12.29 -0.02 -0.05 16 3 H 0.08 3.14 4.58 -2.39 -0.01 3.13 16 4 C -0.52 -32.43 8.91 25.60 0.23 -32.20 16 5 H 0.01 0.51 7.74 -2.91 -0.02 0.49 16 6 C 0.01 0.34 5.45 84.65 0.46 0.80 16 7 N -0.95 -62.77 13.96 21.45 0.30 -62.47 16 8 Si 0.96 43.30 24.42 68.60 1.68 44.98 16 9 H -0.26 -11.22 6.82 99.48 0.68 -10.54 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.22 -8.16 6.53 99.48 0.65 -7.51 16 12 C 0.52 24.39 6.13 87.66 0.54 24.93 16 13 O -0.56 -31.39 12.07 21.10 0.25 -31.14 16 14 N -0.61 -20.60 2.97 -799.17 -2.38 -22.97 16 15 C 0.10 2.20 6.32 86.36 0.55 2.75 16 16 C -0.13 -2.55 5.36 30.67 0.16 -2.39 16 17 C -0.08 -1.26 2.68 -10.77 -0.03 -1.29 16 18 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 19 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 20 C -0.12 -2.65 4.62 30.67 0.14 -2.51 16 21 C 0.15 4.44 3.34 44.23 0.15 4.59 16 22 H 0.13 2.80 8.14 -2.39 -0.02 2.79 16 23 C 0.48 18.15 5.14 71.24 0.37 18.52 16 24 O -0.54 -27.05 14.99 29.94 0.45 -26.60 16 25 O -0.51 -15.52 13.42 -51.36 -0.69 -16.21 16 26 H 0.05 2.07 3.22 -2.39 -0.01 2.06 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 29 H 0.27 16.30 8.31 -92.70 -0.77 15.53 16 30 H 0.09 2.30 5.20 -2.39 -0.01 2.29 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.33 8.05 -2.39 -0.02 1.32 16 39 H 0.42 10.15 9.10 -74.05 -0.67 9.48 16 Total: -1.00 -91.36 305.64 3.75 -87.61 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.30 Total: 20.01 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 3.83 Total: 6.79 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.08 Total: -85.44 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: 0.01 Total: -73.95 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.68 Total: 44.98 kcal Total: -91.36 3.75 -87.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604741365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.765 kcal (2) G-P(sol) polarization free energy of solvation -91.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds