Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46368 * 2 1 4 4 C 1.50695 * 109.47269 * 240.00161 * 2 1 3 5 5 O 1.20827 * 119.99829 * 241.24616 * 4 2 1 6 6 O 1.34231 * 119.99872 * 61.24036 * 4 2 1 7 7 N 1.46495 * 109.47267 * 119.99694 * 2 1 3 8 8 C 1.34779 * 120.00219 * 60.46485 * 7 2 1 9 9 O 1.21277 * 120.00392 * 174.33093 * 8 7 2 10 10 C 1.50707 * 119.99376 * 354.33207 * 8 7 2 11 11 C 1.53005 * 109.46652 * 167.02438 * 10 8 7 12 12 C 1.50705 * 109.46938 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99818 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99699 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00308 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99712 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47052 * 60.00109 * 16 14 12 18 18 H 1.48504 * 109.47212 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47355 * 300.00153 * 16 14 12 20 20 C 1.46498 * 120.00297 * 240.46652 * 7 2 1 21 21 C 1.53780 * 113.61581 * 223.84112 * 20 7 2 22 22 C 1.53782 * 87.08080 * 220.01509 * 21 20 7 23 23 C 1.53784 * 87.08210 * 25.43490 * 22 21 20 24 24 H 1.09005 * 109.46578 * 164.85936 * 1 2 3 25 25 H 1.08998 * 109.47338 * 284.85419 * 1 2 3 26 26 H 1.08991 * 109.47545 * 44.85983 * 1 2 3 27 27 H 0.96708 * 116.99357 * 179.97438 * 6 4 2 28 28 H 1.09000 * 109.47071 * 287.02145 * 10 8 7 29 29 H 1.08995 * 109.47195 * 47.03263 * 10 8 7 30 30 H 1.08999 * 109.47530 * 300.00036 * 11 10 8 31 31 H 1.09004 * 109.46840 * 60.00472 * 11 10 8 32 32 H 0.97000 * 119.99881 * 180.02562 * 15 14 12 33 33 H 1.09002 * 112.85046 * 355.14560 * 20 7 2 34 34 H 1.08998 * 113.61475 * 334.56572 * 21 20 7 35 35 H 1.08998 * 113.61244 * 105.46807 * 21 20 7 36 36 H 1.09000 * 113.61410 * 270.88092 * 22 21 20 37 37 H 1.09004 * 113.60908 * 139.97897 * 22 21 20 38 38 H 1.09004 * 113.61300 * 220.02300 * 23 22 21 39 39 H 1.08997 * 113.69414 * 89.12283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7084 -1.7057 -1.1197 6 8 1.7288 -0.2373 -2.4494 7 7 2.0184 -0.6905 1.1962 8 6 1.7006 -1.9836 1.4048 9 8 2.1873 -2.5845 2.3390 10 6 0.7404 -2.6826 0.4771 11 6 0.7975 -4.1911 0.7263 12 6 -0.1631 -4.8901 -0.2009 13 1 -0.7548 -4.3159 -0.8984 14 6 -0.2866 -6.2627 -0.1587 15 7 0.4336 -6.9619 0.6911 16 14 -1.4768 -7.1292 -1.3085 17 1 -1.0995 -6.8461 -2.7166 18 1 -1.4215 -8.5934 -1.0666 19 1 -2.8551 -6.6371 -1.0569 20 6 2.8522 0.0244 2.1656 21 6 4.0606 -0.7896 2.6575 22 6 3.7799 -0.2137 4.0555 23 6 2.3188 -0.0448 3.6063 24 1 -0.3633 -0.9921 -0.2684 25 1 -0.3634 0.2634 0.9933 26 1 -0.3634 0.7284 -0.7248 27 1 2.0741 -0.7268 -3.2087 28 1 -0.2714 -2.3218 0.6622 29 1 1.0171 -2.4744 -0.5564 30 1 1.8092 -4.5520 0.5413 31 1 0.5208 -4.3993 1.7599 32 1 0.3470 -7.9276 0.7205 33 1 3.1065 1.0338 1.8422 34 1 3.9163 -1.8680 2.5924 35 1 5.0096 -0.4622 2.2329 36 1 4.2891 0.7303 4.2492 37 1 3.9084 -0.9380 4.8599 38 1 1.8617 0.8840 3.9477 39 1 1.6971 -0.9188 3.8002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609640886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -91.057669 kcal Electronic energy + Delta-G solvation = -21955.587933 eV Core-core repulsion = 18671.791123 eV Total energy + Delta-G solvation = -3283.796810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08402 -39.61453 -37.22830 -36.18703 -35.27498 -33.37972 -30.95987 -30.34213 -26.36777 -25.47663 -25.16809 -24.26783 -22.36390 -20.87813 -19.78396 -18.56619 -17.93646 -17.14707 -16.55561 -16.16798 -15.68446 -15.35504 -14.77379 -14.63047 -14.39986 -13.60435 -13.43830 -13.21775 -12.95596 -12.56726 -12.33836 -12.32164 -12.13646 -11.81916 -11.55993 -11.43576 -11.04781 -10.86582 -10.83340 -10.60890 -10.46395 -10.33847 -10.24674 -9.72286 -9.46569 -9.07176 -8.73271 -8.50484 -8.26326 -5.91481 -3.95407 2.23292 2.65696 3.19951 3.36203 3.39932 3.41330 3.43392 4.49351 4.62700 4.72272 4.74751 4.90220 4.94064 5.03823 5.12599 5.29732 5.43232 5.54037 5.65645 5.67058 5.78886 5.97963 6.04922 6.06523 6.20810 6.23210 6.27617 6.37857 6.48794 6.55454 6.96584 6.98940 7.65523 7.78392 7.94022 7.94567 8.12903 8.43924 8.75933 9.12266 9.67217 11.19602 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.006182 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.906065 B = 4528.531169 C = 5446.629733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.159 3.841 3 H 0.122 0.878 4 C 0.456 3.544 5 O -0.481 6.481 6 O -0.517 6.517 7 N -0.606 5.606 8 C 0.532 3.468 9 O -0.518 6.518 10 C -0.144 4.144 11 C 0.041 3.959 12 C -0.524 4.524 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.122 3.878 21 C -0.159 4.159 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.411 0.589 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 19.761 -1.061 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 H 0.140 0.860 4 C 0.295 3.705 5 O -0.366 6.366 6 O -0.329 6.329 7 N -0.341 5.341 8 C 0.324 3.676 9 O -0.392 6.392 10 C -0.183 4.183 11 C 0.003 3.997 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.018 3.982 21 C -0.197 4.197 22 C -0.174 4.174 23 C -0.184 4.184 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.270 0.730 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.162 19.149 -0.118 19.409 hybrid contribution -0.291 -0.753 -1.318 1.546 sum 2.871 18.396 -1.436 18.674 Atomic orbital electron populations 1.22553 0.91469 1.05465 1.04068 1.20442 0.96645 0.96417 0.81305 0.86036 1.23936 0.77851 0.83533 0.85188 1.90863 1.34922 1.24057 1.86762 1.84477 1.73281 1.58427 1.16736 1.48042 1.52966 1.12262 1.20822 1.21330 0.81350 0.79481 0.85462 1.90540 1.52382 1.64246 1.32080 1.22407 0.96409 1.01181 0.98334 1.18863 0.97611 0.85712 0.97493 1.21150 1.23125 0.91892 1.20083 0.92945 1.25008 0.96003 0.97619 0.95681 1.69987 1.40200 1.06549 1.36107 0.86675 0.81530 0.78570 0.81279 1.20330 1.21260 1.20244 1.22695 0.92041 0.95613 0.87817 1.23643 0.96328 1.04501 0.95253 1.22591 0.96466 1.00599 0.97783 1.23318 0.97458 1.02506 0.95078 0.89450 0.90321 0.90244 0.72963 0.89948 0.90081 0.96099 0.95710 0.92946 0.87946 0.86070 0.92490 0.90837 0.91053 0.91885 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.56 37.16 0.32 -1.57 16 2 C 0.16 1.88 3.21 -69.08 -0.22 1.66 16 3 H 0.12 0.99 7.67 -51.93 -0.40 0.59 16 4 C 0.46 6.34 6.07 36.00 0.22 6.55 16 5 O -0.48 -9.03 14.37 -18.75 -0.27 -9.30 16 6 O -0.52 -5.37 13.37 -39.26 -0.52 -5.89 16 7 N -0.61 -9.20 2.50 -158.98 -0.40 -9.59 16 8 C 0.53 10.77 5.82 -10.98 -0.06 10.71 16 9 O -0.52 -12.09 11.73 5.56 0.07 -12.03 16 10 C -0.14 -3.14 3.23 -27.88 -0.09 -3.23 16 11 C 0.04 1.15 4.36 -27.88 -0.12 1.03 16 12 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -28.06 13.29 55.43 0.74 -27.33 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.12 1.58 4.43 -67.12 -0.30 1.29 16 21 C -0.16 -2.34 7.37 -25.92 -0.19 -2.53 16 22 C -0.14 -1.67 8.08 -25.92 -0.21 -1.88 16 23 C -0.15 -1.88 7.45 -25.91 -0.19 -2.07 16 24 H 0.09 1.15 4.67 -51.93 -0.24 0.90 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.41 2.93 9.10 45.56 0.41 3.34 16 28 H 0.08 1.63 6.27 -51.93 -0.33 1.31 16 29 H 0.08 1.72 4.14 -51.93 -0.22 1.51 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.75 7.96 -51.93 -0.41 0.34 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.10 0.99 7.76 -51.93 -0.40 0.58 16 34 H 0.12 2.32 5.35 -51.93 -0.28 2.05 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.55 6.56 -51.93 -0.34 1.21 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -36.56 311.77 -6.68 -43.24 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.70 Total: 3.20 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.26 Total: -4.07 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.34 Total: -36.92 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.73 Total: -27.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.56 -6.68 -43.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609640886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.819 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds