Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46368 * 2 1 4 4 C 1.50695 * 109.47269 * 240.00161 * 2 1 3 5 5 O 1.20827 * 119.99829 * 241.24616 * 4 2 1 6 6 O 1.34231 * 119.99872 * 61.24036 * 4 2 1 7 7 N 1.46495 * 109.47267 * 119.99694 * 2 1 3 8 8 C 1.34779 * 120.00219 * 60.46485 * 7 2 1 9 9 O 1.21277 * 120.00392 * 174.33093 * 8 7 2 10 10 C 1.50707 * 119.99376 * 354.33207 * 8 7 2 11 11 C 1.53005 * 109.46652 * 167.02438 * 10 8 7 12 12 C 1.50705 * 109.46938 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99818 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99699 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00308 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99712 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47052 * 60.00109 * 16 14 12 18 18 H 1.48504 * 109.47212 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47355 * 300.00153 * 16 14 12 20 20 C 1.46498 * 120.00297 * 240.46652 * 7 2 1 21 21 C 1.53780 * 113.61581 * 223.84112 * 20 7 2 22 22 C 1.53782 * 87.08080 * 220.01509 * 21 20 7 23 23 C 1.53784 * 87.08210 * 25.43490 * 22 21 20 24 24 H 1.09005 * 109.46578 * 164.85936 * 1 2 3 25 25 H 1.08998 * 109.47338 * 284.85419 * 1 2 3 26 26 H 1.08991 * 109.47545 * 44.85983 * 1 2 3 27 27 H 0.96708 * 116.99357 * 179.97438 * 6 4 2 28 28 H 1.09000 * 109.47071 * 287.02145 * 10 8 7 29 29 H 1.08995 * 109.47195 * 47.03263 * 10 8 7 30 30 H 1.08999 * 109.47530 * 300.00036 * 11 10 8 31 31 H 1.09004 * 109.46840 * 60.00472 * 11 10 8 32 32 H 0.97000 * 119.99881 * 180.02562 * 15 14 12 33 33 H 1.09002 * 112.85046 * 355.14560 * 20 7 2 34 34 H 1.08998 * 113.61475 * 334.56572 * 21 20 7 35 35 H 1.08998 * 113.61244 * 105.46807 * 21 20 7 36 36 H 1.09000 * 113.61410 * 270.88092 * 22 21 20 37 37 H 1.09004 * 113.60908 * 139.97897 * 22 21 20 38 38 H 1.09004 * 113.61300 * 220.02300 * 23 22 21 39 39 H 1.08997 * 113.69414 * 89.12283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7084 -1.7057 -1.1197 6 8 1.7288 -0.2373 -2.4494 7 7 2.0184 -0.6905 1.1962 8 6 1.7006 -1.9836 1.4048 9 8 2.1873 -2.5845 2.3390 10 6 0.7404 -2.6826 0.4771 11 6 0.7975 -4.1911 0.7263 12 6 -0.1631 -4.8901 -0.2009 13 1 -0.7548 -4.3159 -0.8984 14 6 -0.2866 -6.2627 -0.1587 15 7 0.4336 -6.9619 0.6911 16 14 -1.4768 -7.1292 -1.3085 17 1 -1.0995 -6.8461 -2.7166 18 1 -1.4215 -8.5934 -1.0666 19 1 -2.8551 -6.6371 -1.0569 20 6 2.8522 0.0244 2.1656 21 6 4.0606 -0.7896 2.6575 22 6 3.7799 -0.2137 4.0555 23 6 2.3188 -0.0448 3.6063 24 1 -0.3633 -0.9921 -0.2684 25 1 -0.3634 0.2634 0.9933 26 1 -0.3634 0.7284 -0.7248 27 1 2.0741 -0.7268 -3.2087 28 1 -0.2714 -2.3218 0.6622 29 1 1.0171 -2.4744 -0.5564 30 1 1.8092 -4.5520 0.5413 31 1 0.5208 -4.3993 1.7599 32 1 0.3470 -7.9276 0.7205 33 1 3.1065 1.0338 1.8422 34 1 3.9163 -1.8680 2.5924 35 1 5.0096 -0.4622 2.2329 36 1 4.2891 0.7303 4.2492 37 1 3.9084 -0.9380 4.8599 38 1 1.8617 0.8840 3.9477 39 1 1.6971 -0.9188 3.8002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609640886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = -117.918920 kcal Electronic energy + Delta-G solvation = -21956.752724 eV Core-core repulsion = 18671.791123 eV Total energy + Delta-G solvation = -3284.961601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30746 -40.79701 -38.54126 -37.26307 -36.48156 -35.56155 -32.95579 -31.48745 -28.27581 -26.55138 -26.13275 -25.79286 -23.81053 -22.48973 -20.91032 -20.02655 -18.99735 -18.64456 -18.03474 -17.72901 -16.81121 -16.69069 -16.46784 -16.12237 -15.85160 -15.03987 -14.69164 -14.42764 -14.30214 -14.13587 -13.81335 -13.51241 -13.35091 -13.19275 -13.01119 -12.75074 -12.62353 -12.59355 -12.28930 -12.10593 -11.75583 -11.62249 -11.48927 -11.39904 -11.29813 -11.23076 -10.59147 -10.30097 -9.74928 -8.21126 -6.36351 1.16968 1.37429 1.43385 1.48647 1.51437 1.83962 2.25832 2.40287 3.10950 3.53356 3.71160 3.82562 3.89942 3.97797 4.05191 4.09554 4.25655 4.36490 4.44706 4.52474 4.78532 4.80012 4.86136 4.94259 4.99766 5.05294 5.13704 5.23062 5.32382 5.38700 5.44443 5.57149 5.62953 5.78494 5.84146 6.13380 6.31092 6.80564 6.96846 7.25923 7.33745 8.91767 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.006182 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.906065 B = 4528.531169 C = 5446.629733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.151 3.849 3 H 0.178 0.822 4 C 0.460 3.540 5 O -0.542 6.542 6 O -0.499 6.499 7 N -0.595 5.595 8 C 0.528 3.472 9 O -0.564 6.564 10 C -0.132 4.132 11 C 0.050 3.950 12 C -0.544 4.544 13 H 0.071 0.929 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.124 3.876 21 C -0.176 4.176 22 C -0.124 4.124 23 C -0.144 4.144 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.426 0.574 28 H 0.104 0.896 29 H 0.091 0.909 30 H -0.031 1.031 31 H -0.016 1.016 32 H 0.264 0.736 33 H 0.158 0.842 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 23.454 -2.774 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.046 3.954 3 H 0.195 0.805 4 C 0.302 3.698 5 O -0.432 6.432 6 O -0.312 6.312 7 N -0.328 5.328 8 C 0.319 3.681 9 O -0.442 6.442 10 C -0.171 4.171 11 C 0.013 3.987 12 C -0.582 4.582 13 H 0.089 0.911 14 C -0.204 4.204 15 N -0.578 5.578 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.182 1.182 20 C 0.022 3.978 21 C -0.215 4.215 22 C -0.162 4.162 23 C -0.182 4.182 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.133 0.867 27 H 0.288 0.712 28 H 0.122 0.878 29 H 0.109 0.891 30 H -0.013 1.013 31 H 0.002 0.998 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.749 22.925 -1.878 23.068 hybrid contribution 0.204 -1.851 -0.819 2.034 sum 1.953 21.074 -2.697 21.336 Atomic orbital electron populations 1.22531 0.90129 1.04711 1.05746 1.21011 0.97613 0.98084 0.78742 0.80496 1.24391 0.76367 0.82484 0.86570 1.90874 1.37914 1.26822 1.87623 1.84436 1.72499 1.57935 1.16323 1.47930 1.52098 1.10565 1.22231 1.20983 0.81107 0.81436 0.84532 1.90550 1.53852 1.66041 1.33807 1.22198 0.98528 0.96908 0.99448 1.18606 0.94429 0.90592 0.95104 1.21608 1.23388 0.92740 1.20462 0.91059 1.26189 0.98074 0.98649 0.97531 1.70184 1.42283 1.06999 1.38307 0.85339 0.79072 0.76831 0.78800 1.18781 1.21005 1.18248 1.23095 0.90306 0.97028 0.87396 1.23539 0.98145 1.01712 0.98067 1.22619 0.96338 1.01641 0.95597 1.23209 0.97333 1.02293 0.95398 0.92499 0.89337 0.86656 0.71189 0.87819 0.89148 1.01303 0.99800 0.92775 0.82417 0.91558 0.91093 0.86824 0.92865 0.88231 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.56 71.98 0.62 -2.43 16 2 C 0.15 3.03 3.21 44.25 0.14 3.17 16 3 H 0.18 1.69 7.67 -2.39 -0.02 1.67 16 4 C 0.46 11.87 6.07 71.23 0.43 12.30 16 5 O -0.54 -20.65 14.37 21.96 0.32 -20.33 16 6 O -0.50 -8.79 13.37 -51.43 -0.69 -9.47 16 7 N -0.60 -17.35 2.50 -775.27 -1.93 -19.28 16 8 C 0.53 22.44 5.82 87.66 0.51 22.95 16 9 O -0.56 -28.81 11.73 -3.02 -0.04 -28.85 16 10 C -0.13 -5.99 3.23 29.85 0.10 -5.90 16 11 C 0.05 3.05 4.36 29.85 0.13 3.18 16 12 C -0.54 -32.94 9.11 25.60 0.23 -32.71 16 13 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 14 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 15 N -0.94 -62.03 13.29 21.45 0.28 -61.75 16 16 Si 0.98 45.80 29.54 68.60 2.03 47.82 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.12 2.90 4.43 45.52 0.20 3.10 16 21 C -0.18 -5.21 7.37 31.12 0.23 -4.98 16 22 C -0.12 -2.89 8.08 31.12 0.25 -2.64 16 23 C -0.14 -3.49 7.45 31.12 0.23 -3.26 16 24 H 0.06 1.37 4.67 -2.38 -0.01 1.36 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.43 5.02 9.10 -74.05 -0.67 4.35 16 28 H 0.10 4.19 6.27 -2.39 -0.01 4.17 16 29 H 0.09 3.95 4.14 -2.39 -0.01 3.94 16 30 H -0.03 -2.20 8.14 -2.39 -0.02 -2.22 16 31 H -0.02 -1.11 7.96 -2.38 -0.02 -1.13 16 32 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 33 H 0.16 2.04 7.76 -2.39 -0.02 2.02 16 34 H 0.07 2.77 5.35 -2.39 -0.01 2.76 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.05 1.75 6.56 -2.39 -0.02 1.73 16 Total: -1.00 -89.61 311.77 3.90 -85.71 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.40 Total: 13.33 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 3.54 Total: -7.19 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.65 Total: -81.03 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.41 Total: -58.65 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -89.61 3.90 -85.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609640886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.208 kcal (2) G-P(sol) polarization free energy of solvation -89.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds