Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47586 * 119.99991 * 2 1 3 5 5 O 1.20825 * 120.00291 * 99.99729 * 4 2 1 6 6 O 1.34238 * 119.99711 * 280.00183 * 4 2 1 7 7 N 1.46498 * 109.47010 * 239.99731 * 2 1 3 8 8 C 1.34778 * 119.99885 * 120.00042 * 7 2 1 9 9 O 1.21286 * 119.99989 * 175.54793 * 8 7 2 10 10 C 1.50700 * 120.00332 * 355.54151 * 8 7 2 11 11 C 1.52991 * 109.47638 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47448 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00126 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00015 * 180.02562 * 12 11 10 15 15 N 1.31503 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99718 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47400 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46750 * 119.99773 * 16 14 12 19 19 H 1.48501 * 109.46812 * 239.99784 * 16 14 12 20 20 C 1.46499 * 120.00220 * 300.00036 * 7 2 1 21 21 C 1.53787 * 113.61587 * 224.38794 * 20 7 2 22 22 C 1.53778 * 87.08028 * 220.01695 * 21 20 7 23 23 C 1.53777 * 113.61673 * 126.89142 * 20 7 2 24 24 H 1.09005 * 109.46880 * 299.99765 * 1 2 3 25 25 H 1.08997 * 109.47410 * 60.00169 * 1 2 3 26 26 H 1.09007 * 109.47076 * 180.02562 * 1 2 3 27 27 H 0.96697 * 116.99733 * 179.97438 * 6 4 2 28 28 H 1.09001 * 109.47357 * 300.00967 * 10 8 7 29 29 H 1.09006 * 109.46931 * 60.00033 * 10 8 7 30 30 H 1.09001 * 109.47406 * 300.00778 * 11 10 8 31 31 H 1.09006 * 109.47062 * 59.99955 * 11 10 8 32 32 H 0.97002 * 120.00302 * 180.02562 * 15 14 12 33 33 H 1.08996 * 112.84651 * 355.69312 * 20 7 2 34 34 H 1.09005 * 113.60961 * 334.56296 * 21 20 7 35 35 H 1.08996 * 113.61352 * 105.46681 * 21 20 7 36 36 H 1.08998 * 113.61435 * 270.88274 * 22 21 20 37 37 H 1.09007 * 113.61377 * 139.97598 * 22 21 20 38 38 H 1.09010 * 113.61509 * 254.53297 * 23 20 7 39 39 H 1.09004 * 113.61306 * 25.34399 * 23 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4051 -1.8573 1.1561 6 8 2.0658 -0.0689 2.4092 7 7 2.0183 -0.6907 -1.1961 8 6 2.7931 -0.0357 -2.0833 9 8 3.2638 -0.6284 -3.0311 10 6 3.0746 1.4331 -1.8979 11 6 3.9714 1.9281 -3.0344 12 6 4.2533 3.3967 -2.8486 13 1 3.8344 3.9245 -2.0045 14 6 5.0453 4.0670 -3.7567 15 7 5.5549 3.4245 -4.7848 16 14 5.3942 5.8877 -3.5267 17 1 4.7086 6.3723 -2.3018 18 1 6.8580 6.0978 -3.3913 19 1 4.8929 6.6403 -4.7046 20 6 1.6644 -2.0932 -1.4279 21 6 2.8483 -2.9591 -1.8900 22 6 1.8680 -3.6449 -2.8561 23 6 1.0390 -2.3506 -2.8090 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.3957 -0.5659 3.1702 28 1 2.1360 1.9872 -1.9085 29 1 3.5776 1.5890 -0.9435 30 1 4.9100 1.3741 -3.0242 31 1 3.4680 1.7723 -3.9886 32 1 6.1124 3.8959 -5.4235 33 1 1.0985 -2.5286 -0.6044 34 1 3.6329 -2.3935 -2.3926 35 1 3.2332 -3.6219 -1.1149 36 1 1.3586 -4.5058 -2.4231 37 1 2.2958 -3.8540 -3.8367 38 1 -0.0370 -2.5222 -2.7760 39 1 1.3277 -1.6178 -3.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609640887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -106.360481 kcal Electronic energy + Delta-G solvation = -21567.618910 eV Core-core repulsion = 18283.158520 eV Total energy + Delta-G solvation = -3284.460389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99596 -39.73811 -37.20810 -36.34085 -35.33528 -33.45414 -31.03124 -30.55610 -26.41988 -25.52287 -25.18016 -24.27244 -22.07000 -21.24072 -19.78027 -18.37980 -18.21680 -17.04790 -16.68294 -16.01165 -15.91298 -15.48929 -14.89661 -14.68362 -14.44660 -13.65109 -13.52954 -13.24301 -13.09002 -12.62200 -12.40322 -12.19551 -12.16486 -11.96036 -11.63340 -11.48587 -11.13834 -10.99653 -10.95003 -10.66144 -10.57154 -10.28112 -10.18924 -10.00539 -9.61471 -9.12950 -8.81123 -8.50808 -8.33890 -5.98098 -4.02594 2.01972 2.59026 3.07617 3.31522 3.32681 3.39064 3.41987 4.44929 4.64582 4.74751 4.79624 4.95673 4.97668 5.06675 5.22502 5.23464 5.37251 5.45495 5.49790 5.68183 5.85732 5.87106 6.05586 6.10486 6.11612 6.18252 6.31120 6.32522 6.43902 6.48357 6.82774 7.00983 7.60361 7.72089 7.75308 7.82411 8.04078 8.35352 8.64790 9.05703 9.61271 11.12848 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.005358 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.696139 B = 5224.389059 C = 6160.502779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.134 0.866 4 C 0.467 3.533 5 O -0.502 6.502 6 O -0.514 6.514 7 N -0.601 5.601 8 C 0.516 3.484 9 O -0.511 6.511 10 C -0.135 4.135 11 C 0.038 3.962 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.133 3.867 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.150 4.150 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.409 0.591 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -9.381 12.402 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.152 0.848 4 C 0.307 3.693 5 O -0.388 6.388 6 O -0.326 6.326 7 N -0.336 5.336 8 C 0.307 3.693 9 O -0.385 6.385 10 C -0.175 4.175 11 C 0.001 3.999 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.029 3.971 21 C -0.190 4.190 22 C -0.175 4.175 23 C -0.188 4.188 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.268 0.732 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.377 -9.771 11.353 18.810 hybrid contribution 0.468 0.603 0.800 1.106 sum -10.909 -9.167 12.153 18.728 Atomic orbital electron populations 1.22103 0.91402 1.03490 1.04336 1.20618 0.96415 0.98086 0.81149 0.84820 1.24097 0.74669 0.85653 0.84887 1.90724 1.43857 1.18663 1.85595 1.84553 1.79106 1.49439 1.19455 1.48054 1.52498 1.12172 1.20879 1.21568 0.75957 0.90600 0.81192 1.90592 1.48614 1.68752 1.30553 1.21993 1.02713 0.88933 1.03868 1.18900 0.94151 0.95183 0.91711 1.21240 1.30934 0.94493 1.09870 0.92537 1.25019 0.95859 0.98239 0.95215 1.69999 1.33508 1.36045 1.13219 0.86544 0.78026 0.85406 0.78042 1.19716 1.21027 1.21010 1.22528 0.97736 0.80277 0.96511 1.23489 0.98682 0.98175 0.98650 1.22578 0.98333 0.96230 1.00320 1.23384 0.98444 0.98582 0.98419 0.90293 0.89802 0.91707 0.73235 0.89926 0.90400 0.95793 0.95682 0.92980 0.87798 0.86851 0.92316 0.90973 0.91177 0.92180 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.17 37.16 0.34 -1.02 16 2 C 0.14 1.69 3.05 -69.08 -0.21 1.48 16 3 H 0.13 1.50 5.78 -51.93 -0.30 1.20 16 4 C 0.47 5.52 7.50 36.01 0.27 5.79 16 5 O -0.50 -7.31 15.17 -18.75 -0.28 -7.59 16 6 O -0.51 -4.58 13.42 -39.28 -0.53 -5.11 16 7 N -0.60 -9.02 2.53 -158.98 -0.40 -9.42 16 8 C 0.52 9.77 7.08 -10.98 -0.08 9.69 16 9 O -0.51 -11.38 11.70 5.55 0.06 -11.32 16 10 C -0.14 -2.66 3.97 -27.89 -0.11 -2.77 16 11 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 12 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.13 1.90 2.52 -67.12 -0.17 1.73 16 21 C -0.15 -2.39 7.37 -25.92 -0.19 -2.58 16 22 C -0.14 -1.83 8.08 -25.92 -0.21 -2.04 16 23 C -0.15 -2.09 7.44 -25.92 -0.19 -2.29 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.56 7.24 -51.93 -0.38 0.18 16 27 H 0.41 1.98 9.10 45.56 0.41 2.39 16 28 H 0.08 1.45 7.97 -51.93 -0.41 1.03 16 29 H 0.08 1.42 7.59 -51.93 -0.39 1.02 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.10 1.37 6.39 -51.93 -0.33 1.04 16 34 H 0.11 2.16 5.44 -51.93 -0.28 1.88 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.10 1.61 6.48 -51.93 -0.34 1.28 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -34.26 319.07 -6.64 -40.91 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.94 Total: 2.26 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.08 Total: -4.51 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.33 Total: -35.83 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.75 Total: -24.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.26 -6.64 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609640887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.455 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds