Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47586 * 119.99991 * 2 1 3 5 5 O 1.20825 * 120.00291 * 99.99729 * 4 2 1 6 6 O 1.34238 * 119.99711 * 280.00183 * 4 2 1 7 7 N 1.46498 * 109.47010 * 239.99731 * 2 1 3 8 8 C 1.34778 * 119.99885 * 120.00042 * 7 2 1 9 9 O 1.21286 * 119.99989 * 175.54793 * 8 7 2 10 10 C 1.50700 * 120.00332 * 355.54151 * 8 7 2 11 11 C 1.52991 * 109.47638 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47448 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00126 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.00015 * 180.02562 * 12 11 10 15 15 N 1.31503 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99718 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47400 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46750 * 119.99773 * 16 14 12 19 19 H 1.48501 * 109.46812 * 239.99784 * 16 14 12 20 20 C 1.46499 * 120.00220 * 300.00036 * 7 2 1 21 21 C 1.53787 * 113.61587 * 224.38794 * 20 7 2 22 22 C 1.53778 * 87.08028 * 220.01695 * 21 20 7 23 23 C 1.53777 * 113.61673 * 126.89142 * 20 7 2 24 24 H 1.09005 * 109.46880 * 299.99765 * 1 2 3 25 25 H 1.08997 * 109.47410 * 60.00169 * 1 2 3 26 26 H 1.09007 * 109.47076 * 180.02562 * 1 2 3 27 27 H 0.96697 * 116.99733 * 179.97438 * 6 4 2 28 28 H 1.09001 * 109.47357 * 300.00967 * 10 8 7 29 29 H 1.09006 * 109.46931 * 60.00033 * 10 8 7 30 30 H 1.09001 * 109.47406 * 300.00778 * 11 10 8 31 31 H 1.09006 * 109.47062 * 59.99955 * 11 10 8 32 32 H 0.97002 * 120.00302 * 180.02562 * 15 14 12 33 33 H 1.08996 * 112.84651 * 355.69312 * 20 7 2 34 34 H 1.09005 * 113.60961 * 334.56296 * 21 20 7 35 35 H 1.08996 * 113.61352 * 105.46681 * 21 20 7 36 36 H 1.08998 * 113.61435 * 270.88274 * 22 21 20 37 37 H 1.09007 * 113.61377 * 139.97598 * 22 21 20 38 38 H 1.09010 * 113.61509 * 254.53297 * 23 20 7 39 39 H 1.09004 * 113.61306 * 25.34399 * 23 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4051 -1.8573 1.1561 6 8 2.0658 -0.0689 2.4092 7 7 2.0183 -0.6907 -1.1961 8 6 2.7931 -0.0357 -2.0833 9 8 3.2638 -0.6284 -3.0311 10 6 3.0746 1.4331 -1.8979 11 6 3.9714 1.9281 -3.0344 12 6 4.2533 3.3967 -2.8486 13 1 3.8344 3.9245 -2.0045 14 6 5.0453 4.0670 -3.7567 15 7 5.5549 3.4245 -4.7848 16 14 5.3942 5.8877 -3.5267 17 1 4.7086 6.3723 -2.3018 18 1 6.8580 6.0978 -3.3913 19 1 4.8929 6.6403 -4.7046 20 6 1.6644 -2.0932 -1.4279 21 6 2.8483 -2.9591 -1.8900 22 6 1.8680 -3.6449 -2.8561 23 6 1.0390 -2.3506 -2.8090 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.3957 -0.5659 3.1702 28 1 2.1360 1.9872 -1.9085 29 1 3.5776 1.5890 -0.9435 30 1 4.9100 1.3741 -3.0242 31 1 3.4680 1.7723 -3.9886 32 1 6.1124 3.8959 -5.4235 33 1 1.0985 -2.5286 -0.6044 34 1 3.6329 -2.3935 -2.3926 35 1 3.2332 -3.6219 -1.1149 36 1 1.3586 -4.5058 -2.4231 37 1 2.2958 -3.8540 -3.8367 38 1 -0.0370 -2.5222 -2.7760 39 1 1.3277 -1.6178 -3.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609640887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -129.806676 kcal Electronic energy + Delta-G solvation = -21568.635613 eV Core-core repulsion = 18283.158520 eV Total energy + Delta-G solvation = -3285.477093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12735 -40.83796 -38.56147 -37.21657 -36.46094 -35.51725 -32.92419 -31.64091 -28.19304 -26.63155 -26.26283 -25.65164 -23.55497 -22.59785 -21.00781 -19.77098 -19.12063 -18.59445 -18.02320 -17.39067 -17.03366 -16.68745 -16.41955 -16.28820 -15.85696 -15.00689 -14.60704 -14.41685 -14.37431 -14.14615 -13.93739 -13.29438 -13.25816 -13.11662 -12.99434 -12.75861 -12.66018 -12.49014 -12.42450 -12.13454 -11.92405 -11.70174 -11.51458 -11.42452 -11.33412 -11.22135 -10.56816 -10.31478 -9.74042 -8.17035 -6.30752 1.10366 1.43673 1.44769 1.49444 1.58039 1.76126 2.26065 2.44214 3.16683 3.51486 3.70136 3.84075 3.85130 3.96294 4.04315 4.08818 4.26514 4.38263 4.49895 4.53789 4.76749 4.78201 4.80059 4.93525 4.99898 5.04602 5.10661 5.17234 5.24647 5.37710 5.51355 5.58339 5.62864 5.77603 5.86135 6.18086 6.31338 6.87967 6.96324 7.21370 7.39731 8.95856 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.005358 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.696139 B = 5224.389059 C = 6160.502779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.133 3.867 3 H 0.142 0.858 4 C 0.474 3.526 5 O -0.534 6.534 6 O -0.503 6.503 7 N -0.592 5.592 8 C 0.514 3.486 9 O -0.556 6.556 10 C -0.123 4.123 11 C 0.045 3.955 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.007 4.007 15 N -0.939 5.939 16 Si 0.972 3.028 17 H -0.250 1.250 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.138 3.862 21 C -0.163 4.163 22 C -0.126 4.126 23 C -0.146 4.146 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.429 0.571 28 H 0.112 0.888 29 H 0.098 0.902 30 H -0.021 1.021 31 H -0.015 1.015 32 H 0.262 0.738 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 -8.377 15.054 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.159 0.841 4 C 0.316 3.684 5 O -0.423 6.423 6 O -0.317 6.317 7 N -0.325 5.325 8 C 0.305 3.695 9 O -0.434 6.434 10 C -0.162 4.162 11 C 0.007 3.993 12 C -0.577 4.577 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.796 3.204 17 H -0.174 1.174 18 H -0.209 1.209 19 H -0.207 1.207 20 C 0.035 3.965 21 C -0.201 4.201 22 C -0.164 4.164 23 C -0.185 4.185 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.291 0.709 28 H 0.130 0.870 29 H 0.116 0.884 30 H -0.002 1.002 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.549 -8.761 14.086 21.418 hybrid contribution 1.143 0.249 0.047 1.170 sum -12.406 -8.513 14.133 20.643 Atomic orbital electron populations 1.22111 0.88562 1.04268 1.05716 1.20989 0.98605 0.97873 0.79809 0.84071 1.23937 0.73873 0.85043 0.85575 1.90727 1.45397 1.20028 1.86186 1.84495 1.78631 1.49191 1.19338 1.47920 1.50992 1.12450 1.21140 1.21372 0.76327 0.90392 0.81430 1.90598 1.50674 1.69419 1.32739 1.21755 1.02751 0.89940 1.01776 1.18664 0.93085 0.94897 0.92619 1.21738 1.30596 0.95126 1.10288 0.90394 1.26121 0.95614 1.03926 0.94742 1.70181 1.34618 1.38525 1.14562 0.85295 0.77823 0.78493 0.78770 1.17354 1.20900 1.20682 1.22630 0.96956 0.79561 0.97331 1.23395 0.98688 0.98774 0.99279 1.22604 0.97382 0.96994 0.99421 1.23268 1.00217 0.97888 0.97105 0.87701 0.89624 0.91252 0.70916 0.87038 0.88399 1.00214 0.99618 0.92933 0.85596 0.90822 0.92146 0.87818 0.92143 0.89132 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.13 2.76 3.05 44.25 0.13 2.90 16 3 H 0.14 2.73 5.78 -2.39 -0.01 2.72 16 4 C 0.47 9.95 7.50 71.24 0.53 10.49 16 5 O -0.53 -14.53 15.17 21.97 0.33 -14.20 16 6 O -0.50 -7.23 13.42 -51.49 -0.69 -7.92 16 7 N -0.59 -17.28 2.53 -775.27 -1.96 -19.24 16 8 C 0.51 19.95 7.08 87.66 0.62 20.57 16 9 O -0.56 -26.53 11.70 -3.05 -0.04 -26.56 16 10 C -0.12 -4.82 3.97 29.85 0.12 -4.70 16 11 C 0.04 2.47 4.26 29.84 0.13 2.60 16 12 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 13 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 14 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 15 N -0.94 -59.39 13.29 21.45 0.28 -59.11 16 16 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 17 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.14 3.82 2.52 45.52 0.11 3.93 16 21 C -0.16 -5.24 7.37 31.12 0.23 -5.01 16 22 C -0.13 -3.31 8.08 31.12 0.25 -3.06 16 23 C -0.15 -3.98 7.44 31.12 0.23 -3.75 16 24 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 0.92 7.24 -2.38 -0.02 0.91 16 27 H 0.43 2.70 9.10 -74.06 -0.67 2.03 16 28 H 0.11 3.71 7.97 -2.39 -0.02 3.69 16 29 H 0.10 3.44 7.59 -2.38 -0.02 3.42 16 30 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 31 H -0.01 -0.91 8.10 -2.38 -0.02 -0.92 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.13 2.99 6.39 -2.39 -0.02 2.98 16 34 H 0.07 3.02 5.44 -2.38 -0.01 3.01 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.06 2.14 6.48 -2.38 -0.02 2.12 16 Total: -1.00 -78.93 319.07 4.06 -74.87 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.39 Total: 13.60 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 3.72 Total: -7.30 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.67 Total: -78.34 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.39 Total: -48.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -78.93 4.06 -74.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609640887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.937 kcal (2) G-P(sol) polarization free energy of solvation -78.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds