Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09007 * 110.66717 * 57.03994 * 5 3 2 7 7 C 1.54887 * 110.75770 * 293.60860 * 5 3 2 8 8 C 1.54267 * 104.19361 * 203.73716 * 7 5 3 9 9 C 1.53873 * 106.60123 * 23.61172 * 8 7 5 10 10 H 1.08998 * 110.03164 * 240.71555 * 9 8 7 11 11 C 1.50698 * 110.07597 * 119.30337 * 9 8 7 12 12 O 1.21280 * 119.99860 * 242.81242 * 11 9 8 13 13 N 1.34777 * 120.00047 * 62.80765 * 11 9 8 14 14 C 1.46500 * 120.00157 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.46979 * 35.00290 * 14 13 11 16 16 C 1.52991 * 109.46981 * 275.00104 * 14 13 11 17 17 C 1.50697 * 109.47015 * 155.00103 * 14 13 11 18 18 H 1.08002 * 120.00557 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00119 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99786 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00360 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47250 * 89.99566 * 21 19 17 23 23 H 1.48496 * 109.47321 * 210.00353 * 21 19 17 24 24 H 1.48505 * 109.46983 * 329.99847 * 21 19 17 25 25 C 1.54267 * 106.59683 * 359.97438 * 9 8 7 26 26 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 27 27 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 28 28 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08991 * 110.48710 * 322.41557 * 7 5 3 30 30 H 1.09001 * 110.48961 * 85.06161 * 7 5 3 31 31 H 1.08997 * 110.03488 * 264.32122 * 8 7 5 32 32 H 1.09003 * 110.03176 * 142.89601 * 8 7 5 33 33 H 0.97002 * 119.99421 * 0.02562 * 13 11 9 34 34 H 1.09005 * 109.47647 * 59.99962 * 16 14 13 35 35 H 1.09005 * 109.47592 * 179.97438 * 16 14 13 36 36 H 1.09004 * 109.47919 * 300.00001 * 16 14 13 37 37 H 0.96997 * 119.99792 * 179.97438 * 20 19 17 38 38 H 1.08994 * 110.48769 * 217.71467 * 25 9 8 39 39 H 1.09001 * 110.59908 * 95.12623 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9833 0.7390 -0.8464 7 6 4.1390 0.7273 1.3372 8 6 5.5192 1.4052 1.4623 9 6 5.4553 2.6912 0.6199 10 1 6.2010 2.6547 -0.1742 11 6 5.6920 3.8951 1.4949 12 8 4.8206 4.7280 1.6289 13 7 6.8719 4.0462 2.1286 14 6 7.1017 5.2162 2.9796 15 1 6.1728 5.4896 3.4800 16 6 7.5811 6.3866 2.1188 17 6 8.1504 4.8888 4.0112 18 1 8.6009 3.9074 4.0307 19 6 8.5355 5.8424 4.9296 20 7 7.9880 7.0379 4.9050 21 14 9.8358 5.4368 6.2078 22 1 11.1794 5.7698 5.6701 23 1 9.5846 6.2293 7.4382 24 1 9.7772 3.9886 6.5313 25 6 4.0388 2.7497 0.0117 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.4985 1.0091 2.1728 30 1 4.2492 -0.3560 1.2882 31 1 6.2959 0.7446 1.0772 32 1 5.7211 1.6514 2.5048 33 1 7.5688 3.3801 2.0211 34 1 6.8226 6.6235 1.3726 35 1 7.7517 7.2574 2.7519 36 1 8.5101 6.1133 1.6184 37 1 8.2586 7.7086 5.5513 38 1 4.0758 3.1424 -1.0044 39 1 3.3803 3.3584 0.6312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628808398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = -143.584802 kcal Electronic energy + Delta-G solvation = -20786.582526 eV Core-core repulsion = 17500.507969 eV Total energy + Delta-G solvation = -3286.074557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77361 -39.35492 -37.15618 -36.28419 -34.72156 -32.39343 -30.48115 -28.85215 -28.59123 -27.46487 -25.24278 -23.13798 -21.94181 -20.48836 -19.92419 -19.10381 -17.98292 -17.11543 -16.68220 -16.38814 -15.86276 -15.39287 -15.20994 -14.41780 -13.98455 -13.68421 -13.52365 -13.17473 -13.07835 -12.42057 -12.37769 -12.17460 -11.72023 -11.56247 -11.27077 -11.19616 -11.09529 -10.96600 -10.93635 -10.84897 -10.66503 -10.61398 -10.39165 -10.29302 -10.22298 -9.02703 -8.91181 -8.53989 -7.87118 -6.11137 -4.20576 2.11741 2.57195 3.24489 3.31336 3.33345 3.42688 4.07881 4.33506 4.39296 4.43173 4.79100 4.90601 4.97388 5.00715 5.20894 5.23100 5.29513 5.34100 5.36538 5.49886 5.55674 5.73719 5.84826 5.97720 6.10672 6.22700 6.28012 6.51097 6.84896 6.99326 7.17785 7.49921 7.58809 7.66040 7.71448 7.93814 8.17112 8.70407 8.80217 9.17581 9.47334 10.94818 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.003702 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.657101 B = 7561.200929 C = 7798.348568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.499 6.499 5 C -0.088 4.088 6 H 0.113 0.887 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.116 4.116 10 H 0.097 0.903 11 C 0.505 3.495 12 O -0.551 6.551 13 N -0.709 5.709 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.095 4.095 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.388 0.612 34 H 0.014 0.986 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.074 0.926 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -15.719 -10.062 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.108 4.108 6 H 0.131 0.869 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.138 4.138 10 H 0.115 0.885 11 C 0.290 3.710 12 O -0.430 6.430 13 N -0.356 5.356 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.185 -14.602 -9.829 19.412 hybrid contribution 0.877 -0.398 0.577 1.123 sum -7.308 -14.999 -9.252 19.079 Atomic orbital electron populations 1.23250 0.76639 1.03490 1.02603 1.86511 1.23219 1.33745 1.84294 1.23748 0.91991 0.81209 0.72166 1.90702 1.67034 1.36315 1.44490 1.22100 0.86606 1.00435 1.01613 0.86864 1.22312 0.96699 1.00440 0.95079 1.22146 0.96922 0.94922 1.01359 1.21956 0.98849 0.94599 0.98355 0.88503 1.20292 0.82976 0.86887 0.80894 1.90657 1.44046 1.44476 1.63837 1.46504 1.14504 1.26773 1.47844 1.18726 0.97191 0.80754 0.87136 0.93440 1.22079 0.97374 1.02395 0.98738 1.21224 1.22519 0.98947 1.14485 0.92092 1.24899 0.96541 0.94844 0.97489 1.69908 1.42205 1.03914 1.36059 0.86451 0.81478 0.78403 0.80776 1.20569 1.21088 1.19856 1.22258 0.95428 0.93050 1.02531 0.91869 0.91998 0.88226 0.90897 0.90118 0.90486 0.90153 0.77965 0.96668 0.89191 0.95512 0.92589 0.90734 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.96 10.56 -39.24 -0.41 -4.37 16 3 C 0.47 6.03 7.26 36.00 0.26 6.29 16 4 O -0.50 -8.16 15.47 -18.76 -0.29 -8.45 16 5 C -0.09 -0.98 3.40 -89.79 -0.31 -1.28 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 7 C -0.11 -1.13 6.26 -25.07 -0.16 -1.29 16 8 C -0.12 -1.32 6.41 -25.61 -0.16 -1.48 16 9 C -0.12 -1.60 3.29 -90.66 -0.30 -1.90 16 10 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 11 C 0.51 9.99 6.88 -10.99 -0.08 9.92 16 12 O -0.55 -13.45 15.07 5.56 0.08 -13.37 16 13 N -0.71 -14.59 4.96 -54.94 -0.27 -14.86 16 14 C 0.26 6.75 2.56 -69.09 -0.18 6.57 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 16 C -0.15 -3.71 9.26 37.15 0.34 -3.37 16 17 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.09 -1.33 5.23 -25.08 -0.13 -1.47 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.06 7.62 -51.93 -0.40 0.67 16 33 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.86 6.18 -51.93 -0.32 1.54 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -32.98 324.86 -6.38 -39.36 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.96 Total: 5.06 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.03 Total: 0.59 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.35 Total: -39.31 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.62 Total: -26.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.98 -6.38 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628808398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.224 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds