Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09007 * 110.66717 * 57.03994 * 5 3 2 7 7 C 1.54887 * 110.75770 * 293.60860 * 5 3 2 8 8 C 1.54267 * 104.19361 * 203.73716 * 7 5 3 9 9 C 1.53873 * 106.60123 * 23.61172 * 8 7 5 10 10 H 1.08998 * 110.03164 * 240.71555 * 9 8 7 11 11 C 1.50698 * 110.07597 * 119.30337 * 9 8 7 12 12 O 1.21280 * 119.99860 * 242.81242 * 11 9 8 13 13 N 1.34777 * 120.00047 * 62.80765 * 11 9 8 14 14 C 1.46500 * 120.00157 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.46979 * 35.00290 * 14 13 11 16 16 C 1.52991 * 109.46981 * 275.00104 * 14 13 11 17 17 C 1.50697 * 109.47015 * 155.00103 * 14 13 11 18 18 H 1.08002 * 120.00557 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00119 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99786 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00360 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47250 * 89.99566 * 21 19 17 23 23 H 1.48496 * 109.47321 * 210.00353 * 21 19 17 24 24 H 1.48505 * 109.46983 * 329.99847 * 21 19 17 25 25 C 1.54267 * 106.59683 * 359.97438 * 9 8 7 26 26 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 27 27 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 28 28 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08991 * 110.48710 * 322.41557 * 7 5 3 30 30 H 1.09001 * 110.48961 * 85.06161 * 7 5 3 31 31 H 1.08997 * 110.03488 * 264.32122 * 8 7 5 32 32 H 1.09003 * 110.03176 * 142.89601 * 8 7 5 33 33 H 0.97002 * 119.99421 * 0.02562 * 13 11 9 34 34 H 1.09005 * 109.47647 * 59.99962 * 16 14 13 35 35 H 1.09005 * 109.47592 * 179.97438 * 16 14 13 36 36 H 1.09004 * 109.47919 * 300.00001 * 16 14 13 37 37 H 0.96997 * 119.99792 * 179.97438 * 20 19 17 38 38 H 1.08994 * 110.48769 * 217.71467 * 25 9 8 39 39 H 1.09001 * 110.59908 * 95.12623 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9833 0.7390 -0.8464 7 6 4.1390 0.7273 1.3372 8 6 5.5192 1.4052 1.4623 9 6 5.4553 2.6912 0.6199 10 1 6.2010 2.6547 -0.1742 11 6 5.6920 3.8951 1.4949 12 8 4.8206 4.7280 1.6289 13 7 6.8719 4.0462 2.1286 14 6 7.1017 5.2162 2.9796 15 1 6.1728 5.4896 3.4800 16 6 7.5811 6.3866 2.1188 17 6 8.1504 4.8888 4.0112 18 1 8.6009 3.9074 4.0307 19 6 8.5355 5.8424 4.9296 20 7 7.9880 7.0379 4.9050 21 14 9.8358 5.4368 6.2078 22 1 11.1794 5.7698 5.6701 23 1 9.5846 6.2293 7.4382 24 1 9.7772 3.9886 6.5313 25 6 4.0388 2.7497 0.0117 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.4985 1.0091 2.1728 30 1 4.2492 -0.3560 1.2882 31 1 6.2959 0.7446 1.0772 32 1 5.7211 1.6514 2.5048 33 1 7.5688 3.3801 2.0211 34 1 6.8226 6.6235 1.3726 35 1 7.7517 7.2574 2.7519 36 1 8.5101 6.1133 1.6184 37 1 8.2586 7.7086 5.5513 38 1 4.0758 3.1424 -1.0044 39 1 3.3803 3.3584 0.6312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628808398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = -166.085049 kcal Electronic energy + Delta-G solvation = -20787.558210 eV Core-core repulsion = 17500.507969 eV Total energy + Delta-G solvation = -3287.050241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79572 -40.79644 -38.32151 -37.35644 -36.62581 -34.32534 -31.83366 -30.23911 -29.77643 -28.32655 -27.34110 -24.41966 -23.19949 -21.99793 -21.05211 -20.60664 -19.22342 -18.40593 -17.85729 -17.51281 -17.16764 -17.10049 -16.62953 -16.01336 -15.27205 -15.01945 -14.62866 -14.59753 -14.37370 -14.09679 -13.69713 -13.27033 -13.17932 -12.94073 -12.88124 -12.72620 -12.58493 -12.30248 -12.19830 -12.13966 -12.13767 -11.87539 -11.74976 -11.66167 -11.39148 -11.09584 -10.65154 -10.50761 -9.71960 -8.17033 -6.35062 1.13269 1.45347 1.46462 1.57045 1.71905 1.86580 2.36889 2.67486 3.13327 3.36028 3.45342 3.82623 4.12756 4.20779 4.30853 4.31523 4.33195 4.38058 4.48527 4.55011 4.66992 4.71261 4.76939 4.91607 4.92753 5.08300 5.10073 5.22923 5.30755 5.32892 5.38660 5.45056 5.62966 5.70487 5.92597 6.10607 6.70787 6.73881 7.01331 7.33443 7.61941 8.89451 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.003702 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.657101 B = 7561.200929 C = 7798.348568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.545 6.545 5 C -0.078 4.078 6 H 0.158 0.842 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.103 4.103 10 H 0.136 0.864 11 C 0.497 3.503 12 O -0.607 6.607 13 N -0.702 5.702 14 C 0.269 3.731 15 H -0.008 1.008 16 C -0.134 4.134 17 C -0.545 4.545 18 H 0.077 0.923 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.261 1.261 25 C -0.100 4.100 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.136 0.864 29 H 0.046 0.954 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.407 0.593 34 H 0.009 0.991 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -19.290 -11.036 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.311 3.689 4 O -0.435 6.435 5 C -0.097 4.097 6 H 0.176 0.824 7 C -0.141 4.141 8 C -0.148 4.148 9 C -0.124 4.124 10 H 0.154 0.846 11 C 0.285 3.715 12 O -0.489 6.489 13 N -0.351 5.351 14 C 0.165 3.835 15 H 0.010 0.990 16 C -0.193 4.193 17 C -0.583 4.583 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.559 5.559 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.185 1.185 25 C -0.138 4.138 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.242 0.758 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.388 -18.242 -10.825 22.153 hybrid contribution 0.204 0.727 0.867 1.150 sum -6.184 -17.515 -9.959 21.076 Atomic orbital electron populations 1.23542 0.75223 1.05771 1.02179 1.86499 1.24618 1.32424 1.83624 1.24178 0.92831 0.81065 0.70869 1.90695 1.68148 1.37909 1.46762 1.22151 0.85426 0.98437 1.03645 0.82422 1.22335 0.95547 1.02506 0.93722 1.22202 0.98775 0.94098 0.99714 1.22003 0.99620 0.92477 0.98309 0.84575 1.21439 0.81558 0.88004 0.80516 1.90640 1.45627 1.47014 1.65646 1.46230 1.15698 1.25875 1.47279 1.18306 0.94541 0.82752 0.87857 0.99031 1.21903 0.97859 1.01489 0.98041 1.21566 1.22401 0.99637 1.14682 0.90494 1.25863 0.98741 0.94584 0.99695 1.70072 1.43772 1.05074 1.36982 0.85303 0.78635 0.78590 0.77560 1.19551 1.21484 1.18511 1.22191 0.94778 0.94848 1.01945 0.92812 0.92049 0.84549 0.93458 0.86407 0.85982 0.92418 0.75751 0.97234 0.91658 0.93776 0.92627 0.89840 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.08 10.56 -51.34 -0.54 -7.62 16 3 C 0.47 11.60 7.26 71.23 0.52 12.12 16 4 O -0.55 -18.41 15.47 21.94 0.34 -18.07 16 5 C -0.08 -1.52 3.40 -10.26 -0.03 -1.55 16 6 H 0.16 1.76 8.14 -2.38 -0.02 1.74 16 7 C -0.10 -1.87 6.26 31.67 0.20 -1.67 16 8 C -0.11 -2.14 6.41 31.32 0.20 -1.94 16 9 C -0.10 -2.64 3.29 -10.82 -0.04 -2.67 16 10 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 11 C 0.50 19.95 6.88 87.66 0.60 20.56 16 12 O -0.61 -31.43 15.07 -3.03 -0.05 -31.47 16 13 N -0.70 -28.87 4.96 -446.12 -2.21 -31.08 16 14 C 0.27 14.21 2.56 44.24 0.11 14.32 16 15 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 16 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 17 C -0.54 -28.85 8.73 25.60 0.22 -28.63 16 18 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 19 C 0.01 0.59 5.30 84.66 0.45 1.04 16 20 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 21 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 C -0.10 -2.73 5.23 31.66 0.17 -2.57 16 26 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 27 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 30 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.42 7.62 -2.39 -0.02 1.40 16 33 H 0.41 13.53 8.54 -92.71 -0.79 12.74 16 34 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.06 3.71 6.07 -2.38 -0.01 3.70 16 36 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.03 6.18 -2.39 -0.01 2.02 16 Total: -1.00 -77.76 324.86 4.33 -73.44 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.26 Total: 20.02 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.26 Total: 4.30 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.97 Total: -84.54 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -0.25 Total: -57.17 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -77.76 4.33 -73.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628808398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.649 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds