Wall clock time and date at job start Mon Mar 30 2020 01:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 5 5 C 1.46900 * 110.99922 * 85.00294 * 4 2 1 6 6 C 1.53004 * 109.46707 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46674 * 179.97438 * 6 5 4 8 8 S 1.81004 * 109.46972 * 179.97438 * 7 6 5 9 9 C 1.76195 * 100.00191 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99989 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31630 * 119.99951 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00250 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47069 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47440 * 119.99245 * 13 11 9 16 16 H 1.48507 * 109.47164 * 239.99792 * 13 11 9 17 17 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 18 18 C 1.39870 * 125.89830 * 274.99830 * 17 2 1 19 19 C 1.35318 * 107.92082 * 179.97438 * 18 17 2 20 20 N 1.34950 * 107.74465 * 0.02562 * 19 18 17 21 21 C 1.46497 * 126.03461 * 179.97438 * 20 19 18 22 22 N 1.30835 * 125.89862 * 94.69193 * 17 2 1 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 1.00899 * 110.99606 * 208.95885 * 4 2 1 27 27 H 1.08996 * 109.46839 * 299.99510 * 5 4 2 28 28 H 1.09003 * 109.47177 * 60.00055 * 5 4 2 29 29 H 1.08999 * 109.46901 * 299.99864 * 6 5 4 30 30 H 1.09003 * 109.47117 * 60.00189 * 6 5 4 31 31 H 1.08999 * 109.47459 * 299.99661 * 7 6 5 32 32 H 1.09003 * 109.47080 * 60.00307 * 7 6 5 33 33 H 0.96996 * 120.00130 * 180.02562 * 12 11 9 34 34 H 1.07999 * 126.04152 * 359.97438 * 18 17 2 35 35 H 1.08004 * 126.12761 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47163 * 90.00847 * 21 20 19 37 37 H 1.09007 * 109.47446 * 210.00028 * 21 20 19 38 38 H 1.09000 * 109.47719 * 330.00283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 6 2.6611 0.4200 -4.7694 8 16 3.2696 -0.4736 -6.2211 9 6 3.2450 0.8247 -7.4121 10 1 2.9155 1.8129 -7.1269 11 6 3.6481 0.5772 -8.7169 12 7 4.0492 -0.6273 -9.0646 13 14 3.6227 1.9537 -9.9794 14 1 3.1348 3.2024 -9.3405 15 1 4.9949 2.1694 -10.5044 16 1 2.7174 1.5837 -11.0970 17 6 2.0323 -0.7104 1.2305 18 6 2.2126 -0.1360 2.4930 19 6 2.6753 -1.0971 3.3255 20 7 2.7846 -2.2391 2.6149 21 6 3.2495 -3.5310 3.1259 22 7 2.3698 -1.9724 1.3037 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.9173 -1.1206 -1.0286 27 1 1.0872 0.6163 -2.5525 28 1 2.7590 1.0462 -2.1182 29 1 3.5917 -0.9263 -3.3681 30 1 1.9202 -1.3568 -3.8030 31 1 1.6655 0.8130 -4.9752 32 1 3.3370 1.2441 -4.5408 33 1 4.3313 -0.8002 -9.9764 34 1 2.0170 0.8929 2.7567 35 1 2.9152 -0.9724 4.3712 36 1 2.3996 -4.0997 3.5030 37 1 3.7311 -4.0878 2.3219 38 1 3.9638 -3.3669 3.9327 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643375081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:32 Heat of formation + Delta-G solvation = 63.602992 kcal Electronic energy + Delta-G solvation = -17303.519183 eV Core-core repulsion = 14501.474585 eV Total energy + Delta-G solvation = -2802.044598 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39718 -37.25173 -34.12961 -32.45249 -32.33222 -30.23690 -29.57044 -26.85432 -25.70013 -24.81113 -22.48981 -21.42206 -20.86393 -19.43688 -17.41990 -17.24090 -15.96317 -15.67492 -15.09066 -14.78468 -14.75931 -14.21257 -13.96798 -13.80505 -13.43284 -12.97866 -12.89189 -12.73576 -12.38477 -12.15536 -12.00804 -11.48268 -11.28363 -11.16190 -11.04000 -10.80170 -10.68844 -10.54900 -10.30312 -9.51003 -9.40251 -9.01993 -8.78383 -8.32805 -8.22702 -6.46551 -6.18025 -3.87530 1.68585 2.29127 2.58380 3.24177 3.25817 3.33258 3.61652 4.12776 4.23500 4.28257 4.58592 4.65968 4.83264 5.06550 5.11372 5.17833 5.25972 5.39109 5.41523 5.47362 5.53134 5.61257 5.68162 5.73713 5.86204 5.88927 6.00576 6.18419 6.25335 6.42579 6.43583 6.69883 6.77338 6.83533 7.11598 7.44862 7.62133 7.65568 8.41808 9.28259 10.90278 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.041915 B = 0.002694 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.858767 B =10390.411434 C =10782.692414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 H 0.061 0.939 4 N -0.679 5.679 5 C 0.062 3.938 6 C -0.095 4.095 7 C -0.111 4.111 8 S -0.134 6.134 9 C -0.514 4.514 10 H 0.072 0.928 11 C 0.069 3.931 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.071 3.929 18 C -0.268 4.268 19 C 0.050 3.950 20 N -0.380 5.380 21 C 0.102 3.898 22 N -0.271 5.271 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.347 0.653 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 -0.725 26.513 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.054 3.946 3 H 0.079 0.921 4 N -0.312 5.312 5 C -0.068 4.068 6 C -0.134 4.134 7 C -0.260 4.260 8 S 0.094 5.906 9 C -0.662 4.662 10 H 0.091 0.909 11 C -0.139 4.139 12 N -0.506 5.506 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.097 4.097 18 C -0.298 4.298 19 C -0.096 4.096 20 N -0.162 5.162 21 C -0.040 4.040 22 N -0.093 5.093 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.166 0.834 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.189 0.811 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.402 -3.433 25.518 25.972 hybrid contribution 0.407 3.367 0.158 3.396 sum -2.995 -0.066 25.676 25.850 Atomic orbital electron populations 1.21754 0.93173 1.02813 1.01469 1.19911 0.96030 0.94292 0.84341 0.92102 1.60476 1.34278 1.32963 1.03444 1.22103 1.00696 0.93615 0.90377 1.21231 1.01648 0.98353 0.92130 1.23222 1.02793 1.01127 0.98903 1.84653 1.85350 1.18887 1.01690 1.22740 1.50685 0.96771 0.96052 0.90943 1.25020 0.94717 0.96405 0.97759 1.70038 1.41554 1.20032 1.18965 0.86116 0.77886 0.81106 0.80426 1.19622 1.20618 1.20587 1.22396 0.99356 0.91791 0.96121 1.21355 1.14283 1.01149 0.93030 1.22504 1.01838 0.86551 0.98714 1.48620 1.50935 1.09106 1.07585 1.21845 1.00167 0.81738 1.00210 1.77467 1.19707 1.16090 0.96010 0.91791 0.91784 0.92529 0.83420 0.90935 0.95410 0.91908 0.90679 0.92091 0.92377 0.92413 0.83599 0.81069 0.90833 0.89111 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.40 37.16 0.35 -1.10 16 2 C 0.17 1.96 3.09 -68.86 -0.21 1.75 16 3 H 0.06 0.67 7.80 -51.93 -0.40 0.26 16 4 N -0.68 -9.33 6.20 -107.95 -0.67 -10.00 16 5 C 0.06 0.90 5.48 -3.82 -0.02 0.87 16 6 C -0.09 -1.65 5.48 -26.73 -0.15 -1.80 16 7 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 8 S -0.13 -3.63 21.44 -107.50 -2.30 -5.93 16 9 C -0.51 -15.09 9.50 30.94 0.29 -14.80 16 10 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 12 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 13 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 C 0.07 0.86 5.95 -82.41 -0.49 0.37 16 18 C -0.27 -2.64 10.74 -40.01 -0.43 -3.07 16 19 C 0.05 0.41 11.49 -17.22 -0.20 0.22 16 20 N -0.38 -3.76 4.01 -68.16 -0.27 -4.03 16 21 C 0.10 0.57 11.47 59.85 0.69 1.26 16 22 N -0.27 -3.56 12.05 33.67 0.41 -3.16 16 23 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.35 4.94 8.06 -39.29 -0.32 4.63 16 27 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 28 H 0.03 0.38 8.06 -51.93 -0.42 -0.03 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -34.26 335.88 -8.23 -42.49 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.11 Total: 0.95 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.20 Total: -42.98 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.30 Total: -5.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.26 -8.23 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643375081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.095 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds