Wall clock time and date at job start Mon Mar 30 2020 01:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 5 5 C 1.46900 * 110.99922 * 85.00294 * 4 2 1 6 6 C 1.53004 * 109.46707 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46674 * 179.97438 * 6 5 4 8 8 S 1.81004 * 109.46972 * 179.97438 * 7 6 5 9 9 C 1.76195 * 100.00191 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99989 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31630 * 119.99951 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00250 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47069 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47440 * 119.99245 * 13 11 9 16 16 H 1.48507 * 109.47164 * 239.99792 * 13 11 9 17 17 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 18 18 C 1.39870 * 125.89830 * 274.99830 * 17 2 1 19 19 C 1.35318 * 107.92082 * 179.97438 * 18 17 2 20 20 N 1.34950 * 107.74465 * 0.02562 * 19 18 17 21 21 C 1.46497 * 126.03461 * 179.97438 * 20 19 18 22 22 N 1.30835 * 125.89862 * 94.69193 * 17 2 1 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 1.00899 * 110.99606 * 208.95885 * 4 2 1 27 27 H 1.08996 * 109.46839 * 299.99510 * 5 4 2 28 28 H 1.09003 * 109.47177 * 60.00055 * 5 4 2 29 29 H 1.08999 * 109.46901 * 299.99864 * 6 5 4 30 30 H 1.09003 * 109.47117 * 60.00189 * 6 5 4 31 31 H 1.08999 * 109.47459 * 299.99661 * 7 6 5 32 32 H 1.09003 * 109.47080 * 60.00307 * 7 6 5 33 33 H 0.96996 * 120.00130 * 180.02562 * 12 11 9 34 34 H 1.07999 * 126.04152 * 359.97438 * 18 17 2 35 35 H 1.08004 * 126.12761 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47163 * 90.00847 * 21 20 19 37 37 H 1.09007 * 109.47446 * 210.00028 * 21 20 19 38 38 H 1.09000 * 109.47719 * 330.00283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 6 2.6611 0.4200 -4.7694 8 16 3.2696 -0.4736 -6.2211 9 6 3.2450 0.8247 -7.4121 10 1 2.9155 1.8129 -7.1269 11 6 3.6481 0.5772 -8.7169 12 7 4.0492 -0.6273 -9.0646 13 14 3.6227 1.9537 -9.9794 14 1 3.1348 3.2024 -9.3405 15 1 4.9949 2.1694 -10.5044 16 1 2.7174 1.5837 -11.0970 17 6 2.0323 -0.7104 1.2305 18 6 2.2126 -0.1360 2.4930 19 6 2.6753 -1.0971 3.3255 20 7 2.7846 -2.2391 2.6149 21 6 3.2495 -3.5310 3.1259 22 7 2.3698 -1.9724 1.3037 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.9173 -1.1206 -1.0286 27 1 1.0872 0.6163 -2.5525 28 1 2.7590 1.0462 -2.1182 29 1 3.5917 -0.9263 -3.3681 30 1 1.9202 -1.3568 -3.8030 31 1 1.6655 0.8130 -4.9752 32 1 3.3370 1.2441 -4.5408 33 1 4.3313 -0.8002 -9.9764 34 1 2.0170 0.8929 2.7567 35 1 2.9152 -0.9724 4.3712 36 1 2.3996 -4.0997 3.5030 37 1 3.7311 -4.0878 2.3219 38 1 3.9638 -3.3669 3.9327 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643375081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:32 Heat of formation + Delta-G solvation = 40.484904 kcal Electronic energy + Delta-G solvation = -17304.521659 eV Core-core repulsion = 14501.474585 eV Total energy + Delta-G solvation = -2803.047073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11153 -38.29368 -35.22033 -34.59693 -33.31884 -30.95765 -30.66657 -27.85106 -27.49082 -26.15135 -23.45283 -22.49083 -21.82330 -20.29941 -19.52153 -17.95819 -17.00719 -16.89662 -16.47388 -16.34110 -15.97700 -15.56137 -15.05033 -14.79792 -14.56310 -14.12719 -13.76869 -13.67750 -13.42541 -13.27918 -13.17479 -12.94938 -12.87401 -12.76477 -12.43903 -12.26858 -12.19011 -11.71685 -11.54890 -11.31000 -11.15064 -10.31139 -10.20931 -9.49548 -9.35369 -8.66793 -8.36967 -6.13577 1.00015 1.31785 1.38957 1.50115 1.70977 1.74773 1.83953 2.28759 2.97135 3.08518 3.34762 3.55165 3.94394 4.04171 4.14251 4.21685 4.30884 4.35132 4.44917 4.47661 4.55360 4.70621 4.75216 4.76686 4.79545 4.86648 4.93693 4.96384 5.11172 5.19638 5.32352 5.35878 5.40328 5.68424 6.07176 6.18912 6.21799 6.36696 6.83910 7.05028 8.72931 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.041915 B = 0.002694 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.858767 B =10390.411434 C =10782.692414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.072 0.928 4 N -0.687 5.687 5 C 0.076 3.924 6 C -0.083 4.083 7 C -0.085 4.085 8 S -0.204 6.204 9 C -0.536 4.536 10 H 0.074 0.926 11 C 0.012 3.988 12 N -0.909 5.909 13 Si 0.997 3.003 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.054 3.946 18 C -0.287 4.287 19 C 0.061 3.939 20 N -0.386 5.386 21 C 0.093 3.907 22 N -0.321 5.321 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.342 0.658 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.164 0.836 35 H 0.215 0.785 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 0.847 28.227 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.090 0.910 4 N -0.320 5.320 5 C -0.055 4.055 6 C -0.122 4.122 7 C -0.235 4.235 8 S 0.025 5.975 9 C -0.683 4.683 10 H 0.092 0.908 11 C -0.192 4.192 12 N -0.546 5.546 13 Si 0.819 3.181 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.112 4.112 18 C -0.317 4.317 19 C -0.086 4.086 20 N -0.168 5.168 21 C -0.047 4.047 22 N -0.144 5.144 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.160 0.840 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.181 0.819 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.574 -1.873 27.246 27.543 hybrid contribution 0.462 2.805 -0.225 2.851 sum -3.112 0.931 27.021 27.216 Atomic orbital electron populations 1.21711 0.92623 1.01849 1.02437 1.19979 0.96391 0.94605 0.83618 0.90994 1.60447 1.34057 1.33251 1.04196 1.21904 1.01074 0.93315 0.89215 1.21108 1.01389 0.97569 0.92161 1.23135 1.02485 1.01034 0.96802 1.84707 1.86296 1.21297 1.05196 1.23072 1.51215 0.97019 0.97041 0.90816 1.26116 0.93818 0.99268 1.00015 1.70173 1.42225 1.22370 1.19787 0.84929 0.78354 0.77616 0.77225 1.18543 1.19640 1.19652 1.22515 0.99797 0.91927 0.96935 1.21671 1.15114 1.02478 0.92407 1.23186 0.99769 0.85411 1.00196 1.48956 1.50346 1.10694 1.06807 1.22154 1.01292 0.80455 1.00758 1.77367 1.21584 1.16990 0.98461 0.91657 0.93640 0.90683 0.83967 0.90169 0.94427 0.92358 0.91797 0.91639 0.91833 0.91978 0.81880 0.76883 0.89790 0.90004 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.40 71.98 0.68 -1.98 16 2 C 0.17 3.76 3.09 44.17 0.14 3.90 16 3 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 4 N -0.69 -18.65 6.20 -495.44 -3.07 -21.72 16 5 C 0.08 2.09 5.48 86.30 0.47 2.56 16 6 C -0.08 -2.90 5.48 30.60 0.17 -2.73 16 7 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 8 S -0.20 -11.27 21.44 -56.49 -1.21 -12.48 16 9 C -0.54 -31.73 9.50 67.95 0.65 -31.08 16 10 H 0.07 4.20 7.80 -2.91 -0.02 4.17 16 11 C 0.01 0.72 5.49 84.86 0.47 1.19 16 12 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 13 Si 1.00 44.75 29.55 68.60 2.03 46.78 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 C 0.05 1.28 5.95 43.10 0.26 1.53 16 18 C -0.29 -5.11 10.74 21.99 0.24 -4.87 16 19 C 0.06 0.85 11.49 83.54 0.96 1.81 16 20 N -0.39 -7.05 4.01 -369.56 -1.48 -8.53 16 21 C 0.09 0.90 11.47 127.77 1.47 2.36 16 22 N -0.32 -8.38 12.05 -47.39 -0.57 -8.95 16 23 H 0.06 1.31 7.45 -2.39 -0.02 1.30 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.34 9.83 8.06 -89.69 -0.72 9.11 16 27 H 0.08 2.11 7.44 -2.39 -0.02 2.10 16 28 H 0.04 0.98 8.06 -2.39 -0.02 0.96 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.67 8.14 -2.40 -0.02 2.65 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -75.34 335.88 2.18 -73.16 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.31 Total: 18.08 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 5.89 Total: -30.46 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -4.84 Total: -95.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -1.21 Total: -12.48 kcal Total: -75.34 2.18 -73.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643375081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.646 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds