Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52996 * 109.46923 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47412 * 65.00228 * 4 3 2 6 6 C 1.35773 * 117.00176 * 180.02562 * 5 4 3 7 7 C 1.35120 * 125.84195 * 179.97438 * 6 5 4 8 8 C 1.41455 * 106.79238 * 180.02562 * 7 6 5 9 9 C 1.34441 * 106.89523 * 359.97438 * 8 7 6 10 10 C 1.50699 * 125.73864 * 179.97438 * 9 8 7 11 11 N 1.46909 * 109.46766 * 90.00355 * 10 9 8 12 12 C 1.46893 * 110.99966 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47432 * 325.00490 * 12 11 10 14 14 C 1.53006 * 109.46630 * 85.00200 * 12 11 10 15 15 C 1.50697 * 109.47486 * 204.99800 * 12 11 10 16 16 H 1.08000 * 119.99617 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00092 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00225 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99820 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46934 * 120.00639 * 19 17 15 22 22 H 1.48501 * 109.46900 * 240.00570 * 19 17 15 23 23 O 1.34332 * 125.83965 * 0.02562 * 6 5 4 24 24 H 1.09002 * 109.46940 * 299.99780 * 1 2 3 25 25 H 1.08995 * 109.47506 * 60.00130 * 1 2 3 26 26 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00068 * 3 2 1 28 28 H 1.09001 * 109.46768 * 300.00008 * 3 2 1 29 29 H 1.08995 * 109.47570 * 304.99601 * 4 3 2 30 30 H 1.09002 * 109.47152 * 184.99624 * 4 3 2 31 31 H 1.08003 * 126.60680 * 0.02562 * 7 6 5 32 32 H 1.07997 * 126.55147 * 179.73843 * 8 7 6 33 33 H 1.09001 * 109.46972 * 210.00243 * 10 9 8 34 34 H 1.08991 * 109.47298 * 330.00646 * 10 9 8 35 35 H 1.00898 * 110.99430 * 303.95688 * 11 10 9 36 36 H 1.09000 * 109.47205 * 299.99185 * 14 12 11 37 37 H 1.08994 * 109.47527 * 60.00089 * 14 12 11 38 38 H 1.09006 * 109.46835 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00123 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3006 0.3978 -1.3836 7 6 5.8993 -0.1542 -2.4618 8 6 7.2905 -0.1457 -2.2058 9 6 7.4612 0.4086 -0.9929 10 6 8.7830 0.6255 -0.3025 11 7 9.3132 1.9471 -0.6639 12 6 10.6037 2.1942 -0.0073 13 1 10.6015 1.7367 0.9821 14 6 11.7282 1.5859 -0.8478 15 6 10.8233 3.6791 0.1263 16 1 10.0784 4.3701 -0.2397 17 6 11.9747 4.1554 0.7166 18 7 12.8815 3.3138 1.1627 19 14 12.2465 5.9960 0.8827 20 1 11.0858 6.7217 0.3070 21 1 12.3872 6.3480 2.3185 22 1 13.4823 6.3815 0.1551 23 8 6.2531 0.7353 -0.4984 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 5.4100 -0.5297 -3.3483 32 1 8.0668 -0.5172 -2.8583 33 1 8.6419 0.5735 0.7771 34 1 9.4869 -0.1460 -0.6145 35 1 9.3921 2.0434 -1.6652 36 1 11.5695 0.5119 -0.9443 37 1 11.7305 2.0433 -1.8371 38 1 12.6860 1.7697 -0.3608 39 1 13.6917 3.6489 1.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658516890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = -66.789226 kcal Electronic energy + Delta-G solvation = -19995.720802 eV Core-core repulsion = 16712.976351 eV Total energy + Delta-G solvation = -3282.744451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.39801 -38.92777 -37.64190 -36.11766 -33.08368 -32.54506 -31.08578 -29.82269 -27.31340 -26.60455 -25.17888 -24.10244 -23.00209 -21.60801 -20.28567 -20.19716 -18.62961 -17.26381 -16.59759 -16.35040 -16.00057 -15.77850 -15.16830 -14.82852 -14.49228 -14.18434 -13.76504 -13.28761 -13.18953 -13.03783 -12.69035 -12.47139 -12.16865 -11.92931 -11.80610 -11.67749 -11.28995 -11.18051 -10.93728 -10.79588 -10.49298 -10.16827 -10.07625 -9.96167 -9.60615 -9.04347 -8.37929 -7.73849 -7.29426 -5.99850 -4.03089 2.01832 2.55258 2.86037 3.31472 3.32296 3.37096 3.39191 3.45041 4.44075 4.55882 4.76211 4.91951 4.98393 5.03823 5.10517 5.14615 5.19102 5.31912 5.33508 5.33780 5.51199 5.74517 5.81817 6.02187 6.09439 6.25094 6.64418 6.71423 6.74800 6.81002 7.01234 7.04384 7.29484 7.50265 7.71839 7.86021 8.22746 8.47748 8.55998 9.04319 9.62290 11.07208 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.003264 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.856415 B = 8576.661402 C = 9353.038537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.064 3.936 4 C 0.056 3.944 5 O -0.262 6.262 6 C 0.171 3.829 7 C -0.231 4.231 8 C -0.190 4.190 9 C 0.006 3.994 10 C 0.136 3.864 11 N -0.681 5.681 12 C 0.211 3.789 13 H 0.036 0.964 14 C -0.171 4.171 15 C -0.494 4.494 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 O -0.195 6.195 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.330 0.670 36 H 0.006 0.994 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.372 -6.693 -3.423 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.019 4.019 5 O -0.177 6.177 6 C 0.078 3.922 7 C -0.251 4.251 8 C -0.210 4.210 9 C -0.043 4.043 10 C 0.007 3.993 11 N -0.312 5.312 12 C 0.104 3.896 13 H 0.054 0.946 14 C -0.230 4.230 15 C -0.533 4.533 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 O -0.095 6.095 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.657 -6.428 -2.675 20.853 hybrid contribution 0.564 0.663 -0.355 0.940 sum -19.092 -5.766 -3.030 20.173 Atomic orbital electron populations 1.22762 0.80789 1.02999 1.00007 1.87974 1.19875 1.27164 1.95436 1.22586 0.91247 0.85750 1.01719 1.22847 0.93772 0.99191 0.86077 1.86470 1.13498 1.78465 1.39274 1.20281 0.80290 1.01495 0.90178 1.20681 0.93088 1.11688 0.99603 1.21348 0.95803 1.06675 0.97171 1.22396 0.83946 1.02563 0.95353 1.20379 0.85949 0.93368 0.99635 1.60856 1.31913 1.24857 1.13538 1.19228 0.81153 0.96404 0.92859 0.94617 1.22453 1.05510 0.95246 0.99790 1.21177 1.03313 0.91155 1.37647 0.91841 1.24950 0.95979 0.97987 0.95656 1.69887 1.09397 1.33673 1.40792 0.86437 0.77972 0.85359 0.77613 1.19731 1.21140 1.21176 1.83951 1.15626 1.66823 1.43140 0.94010 0.93894 0.89463 0.90716 0.91856 0.90601 0.89598 0.83291 0.83197 0.90034 0.92614 0.85285 0.97467 0.95159 0.89095 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.16 10.67 -40.08 -0.43 -4.59 16 3 C 0.06 0.57 6.32 37.16 0.23 0.80 16 4 C 0.06 0.64 6.07 37.16 0.23 0.86 16 5 O -0.26 -3.78 10.17 -45.72 -0.47 -4.24 16 6 C 0.17 2.74 7.87 29.62 0.23 2.97 16 7 C -0.23 -3.47 10.94 -39.47 -0.43 -3.90 16 8 C -0.19 -2.92 10.80 -39.70 -0.43 -3.35 16 9 C 0.01 0.11 6.83 -35.65 -0.24 -0.13 16 10 C 0.14 2.47 6.01 -4.97 -0.03 2.45 16 11 N -0.68 -14.59 6.22 -109.22 -0.68 -15.27 16 12 C 0.21 5.24 2.57 -68.87 -0.18 5.06 16 13 H 0.04 0.96 7.80 -51.93 -0.40 0.56 16 14 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 15 C -0.49 -13.66 8.84 -34.44 -0.30 -13.97 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 O -0.20 -3.41 10.16 -18.24 -0.19 -3.60 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 34 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 35 H 0.33 6.76 8.46 -39.29 -0.33 6.42 16 36 H 0.01 0.13 7.45 -51.93 -0.39 -0.25 16 37 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -30.74 333.56 -6.71 -37.45 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.02 Total: 3.79 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.43 Total: -10.15 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.05 Total: -40.15 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.08 Total: -12.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.74 -6.71 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658516890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.338 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds