Wall clock time and date at job start Mon Mar 30 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52996 * 109.46923 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47412 * 65.00228 * 4 3 2 6 6 C 1.35773 * 117.00176 * 180.02562 * 5 4 3 7 7 C 1.35120 * 125.84195 * 179.97438 * 6 5 4 8 8 C 1.41455 * 106.79238 * 180.02562 * 7 6 5 9 9 C 1.34441 * 106.89523 * 359.97438 * 8 7 6 10 10 C 1.50699 * 125.73864 * 179.97438 * 9 8 7 11 11 N 1.46909 * 109.46766 * 90.00355 * 10 9 8 12 12 C 1.46893 * 110.99966 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47432 * 325.00490 * 12 11 10 14 14 C 1.53006 * 109.46630 * 85.00200 * 12 11 10 15 15 C 1.50697 * 109.47486 * 204.99800 * 12 11 10 16 16 H 1.08000 * 119.99617 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00092 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00225 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99820 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46997 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46934 * 120.00639 * 19 17 15 22 22 H 1.48501 * 109.46900 * 240.00570 * 19 17 15 23 23 O 1.34332 * 125.83965 * 0.02562 * 6 5 4 24 24 H 1.09002 * 109.46940 * 299.99780 * 1 2 3 25 25 H 1.08995 * 109.47506 * 60.00130 * 1 2 3 26 26 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00068 * 3 2 1 28 28 H 1.09001 * 109.46768 * 300.00008 * 3 2 1 29 29 H 1.08995 * 109.47570 * 304.99601 * 4 3 2 30 30 H 1.09002 * 109.47152 * 184.99624 * 4 3 2 31 31 H 1.08003 * 126.60680 * 0.02562 * 7 6 5 32 32 H 1.07997 * 126.55147 * 179.73843 * 8 7 6 33 33 H 1.09001 * 109.46972 * 210.00243 * 10 9 8 34 34 H 1.08991 * 109.47298 * 330.00646 * 10 9 8 35 35 H 1.00898 * 110.99430 * 303.95688 * 11 10 9 36 36 H 1.09000 * 109.47205 * 299.99185 * 14 12 11 37 37 H 1.08994 * 109.47527 * 60.00089 * 14 12 11 38 38 H 1.09006 * 109.46835 * 179.97438 * 14 12 11 39 39 H 0.96998 * 120.00123 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3006 0.3978 -1.3836 7 6 5.8993 -0.1542 -2.4618 8 6 7.2905 -0.1457 -2.2058 9 6 7.4612 0.4086 -0.9929 10 6 8.7830 0.6255 -0.3025 11 7 9.3132 1.9471 -0.6639 12 6 10.6037 2.1942 -0.0073 13 1 10.6015 1.7367 0.9821 14 6 11.7282 1.5859 -0.8478 15 6 10.8233 3.6791 0.1263 16 1 10.0784 4.3701 -0.2397 17 6 11.9747 4.1554 0.7166 18 7 12.8815 3.3138 1.1627 19 14 12.2465 5.9960 0.8827 20 1 11.0858 6.7217 0.3070 21 1 12.3872 6.3480 2.3185 22 1 13.4823 6.3815 0.1551 23 8 6.2531 0.7353 -0.4984 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 5.4100 -0.5297 -3.3483 32 1 8.0668 -0.5172 -2.8583 33 1 8.6419 0.5735 0.7771 34 1 9.4869 -0.1460 -0.6145 35 1 9.3921 2.0434 -1.6652 36 1 11.5695 0.5119 -0.9443 37 1 11.7305 2.0433 -1.8371 38 1 12.6860 1.7697 -0.3608 39 1 13.6917 3.6489 1.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658516890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:15 Heat of formation + Delta-G solvation = -87.019101 kcal Electronic energy + Delta-G solvation = -19996.598035 eV Core-core repulsion = 16712.976351 eV Total energy + Delta-G solvation = -3283.621684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.63636 -39.87790 -38.47937 -37.87395 -34.79968 -33.99178 -32.19920 -31.25027 -28.78683 -27.27413 -27.20726 -25.47970 -23.97524 -22.78268 -22.15951 -21.47588 -19.76186 -18.50100 -18.18401 -17.38027 -17.00480 -16.74327 -16.60284 -16.39460 -15.78936 -15.35379 -15.05279 -14.84333 -14.74469 -14.17065 -13.89901 -13.74872 -13.56303 -13.25318 -13.00397 -12.79343 -12.72845 -12.65601 -12.55149 -12.25826 -12.14245 -12.03866 -11.89302 -11.06196 -10.83021 -10.71731 -10.48363 -9.11826 -8.86664 -8.09260 -6.20404 0.75119 1.40513 1.42474 1.44522 1.56678 1.66400 2.23250 2.45215 2.72165 3.18936 3.67444 3.80007 3.98628 3.99950 4.02506 4.24434 4.29666 4.36594 4.47365 4.54223 4.55529 4.59594 4.74762 4.77144 4.85786 4.90522 4.92910 5.02928 5.09356 5.40001 5.53007 5.70564 5.81551 5.83087 6.12912 6.26262 6.32033 6.60229 6.76565 6.93258 7.49337 8.95994 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.003264 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.856415 B = 8576.661402 C = 9353.038537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.066 3.934 4 C 0.048 3.952 5 O -0.268 6.268 6 C 0.164 3.836 7 C -0.235 4.235 8 C -0.173 4.173 9 C -0.023 4.023 10 C 0.143 3.857 11 N -0.688 5.688 12 C 0.216 3.784 13 H 0.008 0.992 14 C -0.158 4.158 15 C -0.515 4.515 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.960 3.040 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.279 1.279 23 O -0.213 6.213 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.336 0.664 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.464 -6.555 -4.290 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.010 4.010 4 C -0.026 4.026 5 O -0.184 6.184 6 C 0.070 3.930 7 C -0.255 4.255 8 C -0.193 4.193 9 C -0.071 4.071 10 C 0.014 3.986 11 N -0.320 5.320 12 C 0.108 3.892 13 H 0.026 0.974 14 C -0.218 4.218 15 C -0.554 4.554 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.205 1.205 23 O -0.114 6.114 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.190 0.810 32 H 0.192 0.808 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.768 -6.299 -3.548 21.990 hybrid contribution 0.786 0.573 -0.079 0.976 sum -19.982 -5.725 -3.627 21.100 Atomic orbital electron populations 1.22949 0.78963 1.03928 1.01212 1.87919 1.21974 1.28184 1.95718 1.22669 0.89293 0.85563 1.03440 1.23112 0.95707 0.99030 0.84787 1.86476 1.12606 1.78648 1.40652 1.20665 0.80744 1.01348 0.90215 1.21050 0.93034 1.11275 1.00108 1.21670 0.96606 1.04689 0.96291 1.22220 0.83519 1.04969 0.96411 1.20262 0.87012 0.92105 0.99206 1.60681 1.30083 1.27444 1.13744 1.18982 0.83213 0.94919 0.92112 0.97444 1.22255 1.03389 0.96890 0.99223 1.21454 1.03309 0.92616 1.38037 0.93001 1.25688 0.95744 1.02118 0.95311 1.70001 1.09683 1.35341 1.41086 0.85476 0.77920 0.80405 0.77609 1.19527 1.20755 1.20454 1.83909 1.16068 1.67394 1.44023 0.92453 0.92993 0.88801 0.88007 0.90963 0.91315 0.89084 0.80983 0.80837 0.91165 0.90922 0.84585 0.94858 0.94731 0.91835 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.52 10.67 -144.34 -1.54 -10.06 16 3 C 0.07 1.09 6.32 71.98 0.45 1.55 16 4 C 0.05 1.07 6.07 71.98 0.44 1.50 16 5 O -0.27 -7.55 10.17 -65.49 -0.67 -8.22 16 6 C 0.16 5.11 7.87 67.10 0.53 5.63 16 7 C -0.23 -6.63 10.94 22.34 0.24 -6.38 16 8 C -0.17 -4.96 10.80 22.19 0.24 -4.72 16 9 C -0.02 -0.76 6.83 24.82 0.17 -0.60 16 10 C 0.14 5.15 6.01 85.55 0.51 5.67 16 11 N -0.69 -29.41 6.22 -499.46 -3.11 -32.52 16 12 C 0.22 10.82 2.57 44.17 0.11 10.93 16 13 H 0.01 0.42 7.80 -2.39 -0.02 0.40 16 14 C -0.16 -7.37 8.94 71.98 0.64 -6.73 16 15 C -0.52 -28.76 8.84 25.60 0.23 -28.54 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.53 5.30 84.65 0.45 0.98 16 18 N -0.92 -52.69 11.32 21.45 0.24 -52.44 16 19 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 O -0.21 -7.40 10.16 16.72 0.17 -7.23 16 24 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.07 2.65 8.05 -2.39 -0.02 2.63 16 34 H 0.07 2.36 7.44 -2.39 -0.02 2.34 16 35 H 0.34 13.51 8.46 -89.70 -0.76 12.75 16 36 H 0.03 1.33 7.45 -2.39 -0.02 1.31 16 37 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.06 3.33 6.07 -2.38 -0.01 3.32 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.39 333.56 2.67 -62.72 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.28 Total: 20.81 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 5.27 Total: -19.14 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.86 Total: -84.96 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -2.04 Total: -25.51 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.39 2.67 -62.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658516890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.299 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds