Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52996 * 109.46923 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47412 * 65.00228 * 4 3 2 6 6 C 1.35773 * 117.00176 * 180.02562 * 5 4 3 7 7 C 1.35120 * 125.84195 * 179.97438 * 6 5 4 8 8 C 1.41455 * 106.79238 * 180.02562 * 7 6 5 9 9 C 1.34441 * 106.89523 * 359.97438 * 8 7 6 10 10 C 1.50699 * 125.73864 * 179.97438 * 9 8 7 11 11 N 1.46909 * 109.46766 * 90.00355 * 10 9 8 12 12 C 1.46893 * 110.99966 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46933 * 35.00106 * 12 11 10 14 14 C 1.52993 * 109.47535 * 275.00476 * 12 11 10 15 15 C 1.50696 * 109.47069 * 155.00006 * 12 11 10 16 16 H 1.08003 * 120.00137 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99985 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00039 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99956 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46998 * 60.00143 * 19 17 15 21 21 H 1.48501 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47531 * 300.00208 * 19 17 15 23 23 O 1.34332 * 125.83965 * 0.02562 * 6 5 4 24 24 H 1.08995 * 109.47506 * 60.00130 * 1 2 3 25 25 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46940 * 299.99780 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00068 * 3 2 1 28 28 H 1.09001 * 109.46768 * 300.00008 * 3 2 1 29 29 H 1.08995 * 109.47570 * 304.99601 * 4 3 2 30 30 H 1.09002 * 109.47152 * 184.99624 * 4 3 2 31 31 H 1.08003 * 126.60680 * 0.02562 * 7 6 5 32 32 H 1.07997 * 126.55147 * 179.73843 * 8 7 6 33 33 H 1.09001 * 109.46972 * 210.00243 * 10 9 8 34 34 H 1.08991 * 109.47298 * 330.00646 * 10 9 8 35 35 H 1.00905 * 110.99583 * 56.04812 * 11 10 9 36 36 H 1.09006 * 109.47324 * 180.02562 * 14 12 11 37 37 H 1.09008 * 109.47187 * 299.99755 * 14 12 11 38 38 H 1.09001 * 109.47383 * 59.99925 * 14 12 11 39 39 H 0.97005 * 119.99636 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3006 0.3978 -1.3836 7 6 5.8993 -0.1542 -2.4618 8 6 7.2905 -0.1457 -2.2058 9 6 7.4612 0.4086 -0.9929 10 6 8.7830 0.6255 -0.3025 11 7 9.3132 1.9471 -0.6639 12 6 10.6037 2.1942 -0.0073 13 1 11.1615 1.2601 0.0608 14 6 10.3630 2.7478 1.3985 15 6 11.3937 3.1935 -0.8123 16 1 10.9784 3.6044 -1.7207 17 6 12.6467 3.5834 -0.3892 18 7 13.1526 3.0828 0.7167 19 14 13.6263 4.8217 -1.3875 20 1 12.8668 6.0944 -1.4802 21 1 14.9309 5.0716 -0.7236 22 1 13.8596 4.2840 -2.7519 23 8 6.2531 0.7353 -0.4984 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 5.4100 -0.5297 -3.3483 32 1 8.0668 -0.5172 -2.8583 33 1 8.6419 0.5735 0.7771 34 1 9.4869 -0.1460 -0.6145 35 1 8.6503 2.6752 -0.4434 36 1 11.3207 2.9316 1.8856 37 1 9.8052 3.6819 1.3306 38 1 9.7916 2.0249 1.9808 39 1 14.0344 3.3568 1.0141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658516891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -66.714020 kcal Electronic energy + Delta-G solvation = -20001.359016 eV Core-core repulsion = 16718.617826 eV Total energy + Delta-G solvation = -3282.741190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.40895 -38.96101 -37.67238 -36.09587 -33.05710 -32.57311 -31.11906 -29.82633 -27.31851 -26.63239 -25.17873 -24.07592 -23.04808 -21.59698 -20.26884 -20.21850 -18.65193 -17.30207 -16.58168 -16.36883 -16.02872 -15.80884 -15.05590 -14.81254 -14.55975 -14.27927 -14.04888 -13.37074 -13.15385 -12.74806 -12.66344 -12.49519 -12.01217 -11.84016 -11.74847 -11.65983 -11.59267 -11.24540 -10.91665 -10.77146 -10.57877 -10.16361 -10.11037 -9.95090 -9.57616 -9.05438 -8.36731 -7.72479 -7.29642 -5.99157 -4.02570 2.01082 2.52089 2.90815 3.29562 3.33455 3.35326 3.38946 3.42872 4.44539 4.51239 4.71775 4.87619 4.94907 5.00604 5.06179 5.15351 5.22399 5.30948 5.31193 5.32384 5.44989 5.78510 5.89107 6.05045 6.12068 6.27618 6.65003 6.70125 6.75497 6.81542 7.01002 7.05435 7.28870 7.48962 7.71201 7.85966 8.22537 8.46120 8.55999 9.04179 9.62652 11.07836 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.003021 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.934504 B = 9266.766862 C = 9485.638698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.064 3.936 4 C 0.057 3.943 5 O -0.261 6.261 6 C 0.168 3.832 7 C -0.229 4.229 8 C -0.169 4.169 9 C -0.006 4.006 10 C 0.141 3.859 11 N -0.678 5.678 12 C 0.211 3.789 13 H 0.037 0.963 14 C -0.171 4.171 15 C -0.496 4.496 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 O -0.206 6.206 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.329 0.671 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.006 0.994 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 -5.118 -0.374 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.018 4.018 5 O -0.177 6.177 6 C 0.075 3.925 7 C -0.249 4.249 8 C -0.189 4.189 9 C -0.055 4.055 10 C 0.012 3.988 11 N -0.309 5.309 12 C 0.104 3.896 13 H 0.054 0.946 14 C -0.230 4.230 15 C -0.534 4.534 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.202 1.202 23 O -0.108 6.108 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.025 0.975 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.841 -5.413 -0.696 21.544 hybrid contribution -0.023 1.159 0.565 1.289 sum -20.864 -4.255 -0.131 21.294 Atomic orbital electron populations 1.22766 0.80741 1.03041 1.00012 1.87976 1.19914 1.27105 1.95433 1.22580 0.91225 0.85802 1.01705 1.22825 0.93835 0.99005 0.86180 1.86481 1.13543 1.78488 1.39146 1.20251 0.80144 1.01843 0.90226 1.20755 0.93265 1.11391 0.99519 1.21347 0.95461 1.05329 0.96746 1.22418 0.83356 1.03802 0.95887 1.20414 0.86454 0.95928 0.96014 1.60949 1.06494 1.00540 1.62908 1.19214 0.84421 0.96751 0.89218 0.94559 1.22453 1.02401 0.97698 1.00441 1.21099 1.00201 1.23696 1.08444 0.91888 1.24951 0.97586 0.96748 0.95248 1.69871 1.17415 1.44190 1.22292 0.86538 0.78941 0.81548 0.80212 1.20389 1.21471 1.20229 1.83899 1.15873 1.67487 1.43500 0.93865 0.89425 0.94016 0.90764 0.91831 0.90679 0.89812 0.83237 0.82846 0.94696 0.88349 0.85497 0.89075 0.95271 0.97544 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.05 10.67 -40.08 -0.43 -4.48 16 3 C 0.06 0.54 6.32 37.16 0.23 0.78 16 4 C 0.06 0.61 6.07 37.16 0.23 0.84 16 5 O -0.26 -3.69 10.17 -45.72 -0.47 -4.15 16 6 C 0.17 2.65 7.87 29.62 0.23 2.89 16 7 C -0.23 -3.49 10.94 -39.47 -0.43 -3.92 16 8 C -0.17 -2.70 10.80 -39.70 -0.43 -3.13 16 9 C -0.01 -0.11 6.83 -35.65 -0.24 -0.35 16 10 C 0.14 2.57 6.01 -4.97 -0.03 2.54 16 11 N -0.68 -14.56 6.22 -109.23 -0.68 -15.23 16 12 C 0.21 5.25 2.57 -68.87 -0.18 5.07 16 13 H 0.04 0.97 7.80 -51.93 -0.41 0.57 16 14 C -0.17 -4.07 8.94 37.15 0.33 -3.74 16 15 C -0.50 -13.67 8.84 -34.44 -0.30 -13.97 16 16 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 17 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 18 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 O -0.21 -3.48 10.16 -18.24 -0.19 -3.66 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 34 H 0.10 1.73 8.05 -51.93 -0.42 1.31 16 35 H 0.33 6.89 8.46 -39.29 -0.33 6.56 16 36 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 37 H 0.03 0.67 8.13 -51.92 -0.42 0.24 16 38 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -30.50 333.55 -6.71 -37.21 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.02 Total: 3.95 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.43 Total: -10.24 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.05 Total: -40.11 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.08 Total: -12.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.50 -6.71 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658516891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.503 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds