Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52996 * 109.46923 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.47412 * 65.00228 * 4 3 2 6 6 C 1.35773 * 117.00176 * 180.02562 * 5 4 3 7 7 C 1.35120 * 125.84195 * 179.97438 * 6 5 4 8 8 C 1.41455 * 106.79238 * 180.02562 * 7 6 5 9 9 C 1.34441 * 106.89523 * 359.97438 * 8 7 6 10 10 C 1.50699 * 125.73864 * 179.97438 * 9 8 7 11 11 N 1.46909 * 109.46766 * 90.00355 * 10 9 8 12 12 C 1.46893 * 110.99966 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46933 * 35.00106 * 12 11 10 14 14 C 1.52993 * 109.47535 * 275.00476 * 12 11 10 15 15 C 1.50696 * 109.47069 * 155.00006 * 12 11 10 16 16 H 1.08003 * 120.00137 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99985 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00039 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99956 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46998 * 60.00143 * 19 17 15 21 21 H 1.48501 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47531 * 300.00208 * 19 17 15 23 23 O 1.34332 * 125.83965 * 0.02562 * 6 5 4 24 24 H 1.08995 * 109.47506 * 60.00130 * 1 2 3 25 25 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46940 * 299.99780 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00068 * 3 2 1 28 28 H 1.09001 * 109.46768 * 300.00008 * 3 2 1 29 29 H 1.08995 * 109.47570 * 304.99601 * 4 3 2 30 30 H 1.09002 * 109.47152 * 184.99624 * 4 3 2 31 31 H 1.08003 * 126.60680 * 0.02562 * 7 6 5 32 32 H 1.07997 * 126.55147 * 179.73843 * 8 7 6 33 33 H 1.09001 * 109.46972 * 210.00243 * 10 9 8 34 34 H 1.08991 * 109.47298 * 330.00646 * 10 9 8 35 35 H 1.00905 * 110.99583 * 56.04812 * 11 10 9 36 36 H 1.09006 * 109.47324 * 180.02562 * 14 12 11 37 37 H 1.09008 * 109.47187 * 299.99755 * 14 12 11 38 38 H 1.09001 * 109.47383 * 59.99925 * 14 12 11 39 39 H 0.97005 * 119.99636 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3006 0.3978 -1.3836 7 6 5.8993 -0.1542 -2.4618 8 6 7.2905 -0.1457 -2.2058 9 6 7.4612 0.4086 -0.9929 10 6 8.7830 0.6255 -0.3025 11 7 9.3132 1.9471 -0.6639 12 6 10.6037 2.1942 -0.0073 13 1 11.1615 1.2601 0.0608 14 6 10.3630 2.7478 1.3985 15 6 11.3937 3.1935 -0.8123 16 1 10.9784 3.6044 -1.7207 17 6 12.6467 3.5834 -0.3892 18 7 13.1526 3.0828 0.7167 19 14 13.6263 4.8217 -1.3875 20 1 12.8668 6.0944 -1.4802 21 1 14.9309 5.0716 -0.7236 22 1 13.8596 4.2840 -2.7519 23 8 6.2531 0.7353 -0.4984 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1764 0.0889 31 1 5.4100 -0.5297 -3.3483 32 1 8.0668 -0.5172 -2.8583 33 1 8.6419 0.5735 0.7771 34 1 9.4869 -0.1460 -0.6145 35 1 8.6503 2.6752 -0.4434 36 1 11.3207 2.9316 1.8856 37 1 9.8052 3.6819 1.3306 38 1 9.7916 2.0249 1.9808 39 1 14.0344 3.3568 1.0141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658516891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -86.572123 kcal Electronic energy + Delta-G solvation = -20002.220128 eV Core-core repulsion = 16718.617826 eV Total energy + Delta-G solvation = -3283.602302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.64841 -39.88580 -38.48424 -37.86507 -34.76783 -34.02704 -32.20449 -31.25786 -28.80097 -27.28390 -27.20834 -25.45755 -23.99406 -22.78097 -22.15035 -21.49201 -19.77421 -18.47936 -18.19340 -17.39004 -16.95694 -16.74017 -16.57624 -16.27226 -16.00728 -15.53488 -15.15927 -14.88961 -14.59718 -14.13718 -13.76962 -13.59607 -13.35711 -13.35396 -13.15968 -12.83052 -12.68529 -12.60663 -12.55974 -12.43472 -12.15588 -12.04336 -11.89828 -11.08413 -10.81256 -10.71992 -10.46916 -9.12244 -8.87966 -8.08306 -6.19448 0.74203 1.36732 1.45826 1.47163 1.54981 1.67962 2.21907 2.46299 2.72072 3.20050 3.70265 3.79963 3.89776 3.98919 4.03079 4.23748 4.30202 4.39602 4.47493 4.53803 4.58164 4.59652 4.73765 4.77968 4.85532 4.85964 4.91398 5.05162 5.08078 5.37100 5.52885 5.69450 5.79695 5.83168 6.12697 6.25073 6.30715 6.58962 6.70785 6.92794 7.49992 8.96793 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.003021 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.934504 B = 9266.766862 C = 9485.638698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.065 3.935 4 C 0.048 3.952 5 O -0.268 6.268 6 C 0.167 3.833 7 C -0.236 4.236 8 C -0.162 4.162 9 C -0.030 4.030 10 C 0.148 3.852 11 N -0.682 5.682 12 C 0.216 3.784 13 H 0.013 0.987 14 C -0.159 4.159 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.215 6.215 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.331 0.669 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.026 0.974 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.494 -4.747 -0.910 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.011 4.011 4 C -0.027 4.027 5 O -0.183 6.183 6 C 0.074 3.926 7 C -0.256 4.256 8 C -0.182 4.182 9 C -0.078 4.078 10 C 0.019 3.981 11 N -0.312 5.312 12 C 0.108 3.892 13 H 0.030 0.970 14 C -0.218 4.218 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 O -0.116 6.116 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.189 0.811 32 H 0.185 0.815 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.141 -5.047 -1.232 22.743 hybrid contribution 0.246 1.000 0.746 1.271 sum -21.896 -4.048 -0.486 22.272 Atomic orbital electron populations 1.22946 0.78971 1.03914 1.01215 1.87921 1.21968 1.28247 1.95719 1.22683 0.89384 0.85548 1.03452 1.23135 0.95677 0.99119 0.84758 1.86494 1.12455 1.78668 1.40710 1.20562 0.80676 1.01293 0.90086 1.21060 0.92987 1.11339 1.00231 1.21616 0.96331 1.04037 0.96224 1.22173 0.83143 1.05832 0.96616 1.20311 0.87283 0.94203 0.96333 1.60811 1.05527 1.02130 1.62717 1.18981 0.85605 0.94986 0.89641 0.96952 1.22269 1.01275 0.98312 0.99952 1.21389 1.01032 1.24475 1.08576 0.92754 1.25696 0.98525 0.98413 0.96212 1.69991 1.17662 1.45115 1.23379 0.85572 0.77592 0.79388 0.78796 1.19818 1.20983 1.19866 1.83863 1.15964 1.67796 1.44026 0.93017 0.88856 0.92407 0.87929 0.91014 0.91248 0.88798 0.81113 0.81523 0.94454 0.87940 0.85251 0.91630 0.95058 0.95470 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.21 10.67 -144.34 -1.54 -9.75 16 3 C 0.07 1.00 6.32 71.98 0.45 1.45 16 4 C 0.05 0.97 6.07 71.98 0.44 1.41 16 5 O -0.27 -7.26 10.17 -65.49 -0.67 -7.92 16 6 C 0.17 5.08 7.87 67.10 0.53 5.61 16 7 C -0.24 -6.83 10.94 22.34 0.24 -6.58 16 8 C -0.16 -4.97 10.80 22.19 0.24 -4.73 16 9 C -0.03 -1.00 6.83 24.82 0.17 -0.83 16 10 C 0.15 5.32 6.01 85.55 0.51 5.84 16 11 N -0.68 -29.11 6.22 -499.48 -3.11 -32.22 16 12 C 0.22 10.81 2.57 44.17 0.11 10.93 16 13 H 0.01 0.68 7.80 -2.39 -0.02 0.66 16 14 C -0.16 -7.57 8.94 71.98 0.64 -6.92 16 15 C -0.52 -28.58 8.84 25.60 0.23 -28.36 16 16 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.54 5.30 84.66 0.45 0.99 16 18 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 19 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 O -0.21 -7.08 10.16 16.72 0.17 -6.91 16 24 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.04 1.32 7.44 -2.39 -0.02 1.31 16 34 H 0.10 3.57 8.05 -2.39 -0.02 3.55 16 35 H 0.33 13.77 8.46 -89.69 -0.76 13.01 16 36 H 0.06 3.48 6.07 -2.38 -0.01 3.47 16 37 H 0.03 1.43 8.13 -2.38 -0.02 1.41 16 38 H 0.03 1.13 7.45 -2.39 -0.02 1.12 16 39 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -64.11 333.55 2.67 -61.44 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.28 Total: 21.52 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 5.27 Total: -19.65 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.86 Total: -84.60 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.04 Total: -24.58 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.11 2.67 -61.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658516891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.133 kcal (2) G-P(sol) polarization free energy of solvation -64.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds