Wall clock time and date at job start Mon Mar 30 2020 00:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47287 * 59.99728 * 9 7 5 11 11 H 1.48508 * 109.47446 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47209 * 299.99931 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 H 1.09001 * 115.54860 * 33.99743 * 19 17 16 21 21 C 1.52999 * 117.49887 * 248.32997 * 19 17 16 22 22 C 1.52996 * 60.00050 * 252.50533 * 21 19 17 23 23 H 1.08997 * 117.49575 * 107.48691 * 22 21 19 24 24 C 1.52995 * 117.50179 * 252.50942 * 22 21 19 25 25 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 26 26 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 27 27 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 29 29 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 30 30 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 31 31 H 1.08992 * 109.47426 * 150.00343 * 4 3 2 32 32 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 34 34 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 35 35 H 1.08998 * 117.50016 * 359.97438 * 21 19 17 36 36 H 1.09005 * 117.49667 * 145.01244 * 21 19 17 37 37 H 1.09005 * 109.47559 * 128.61736 * 24 22 21 38 38 H 1.09002 * 109.47231 * 248.62364 * 24 22 21 39 39 H 1.09006 * 109.47338 * 8.62297 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 6.1417 0.6407 -3.5942 11 1 6.1614 2.7972 -4.7026 12 1 6.8410 2.6206 -2.3811 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 1 2.2220 3.6422 5.8864 21 6 3.6346 2.1972 6.8793 22 6 2.2128 1.9736 7.3983 23 1 1.8503 0.9469 7.4463 24 6 1.7100 2.9037 8.5041 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1386 32 1 3.6755 3.5168 -4.4436 33 1 2.6212 0.4188 2.5302 34 1 0.9432 1.0128 2.5298 35 1 4.2072 1.3174 6.5861 36 1 4.2118 3.0071 7.3256 37 1 0.7460 3.3231 8.2159 38 1 1.5987 2.3399 9.4304 39 1 2.4271 3.7109 8.6541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060834856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:24 Heat of formation + Delta-G solvation = -100.604818 kcal Electronic energy + Delta-G solvation = -20478.881523 eV Core-core repulsion = 17194.670718 eV Total energy + Delta-G solvation = -3284.210805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70826 -39.08114 -37.66160 -36.09230 -35.29932 -32.84755 -30.19801 -29.63362 -28.82691 -26.67167 -24.64885 -23.08162 -22.53065 -21.34734 -20.21125 -18.66437 -17.99824 -16.80443 -16.68181 -16.34105 -16.03412 -15.37766 -14.77056 -14.44369 -14.27428 -13.87912 -13.48514 -13.36229 -13.26316 -12.82258 -12.58583 -12.20938 -12.12376 -12.05808 -11.76980 -11.62894 -11.23750 -10.96170 -10.87694 -10.76265 -10.60045 -10.54528 -10.50827 -10.38967 -10.15379 -9.68551 -8.99863 -8.44963 -7.76083 -6.06236 -4.11298 2.01393 2.40746 3.24512 3.31646 3.35928 3.39828 3.46077 3.84395 4.37917 4.42361 4.44225 4.54734 4.86718 4.90203 4.97169 5.14793 5.21270 5.28315 5.33678 5.36952 5.41555 5.43938 5.58109 5.66160 5.70995 5.72609 5.96910 5.99124 6.18419 6.37124 6.44216 6.99169 7.39037 7.46512 7.71892 7.89745 8.19810 8.29110 8.83891 8.98677 9.53702 11.01926 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.003912 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.067574 B = 7154.876955 C = 7797.478746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.324 6.324 17 C 0.491 3.509 18 O -0.514 6.514 19 C -0.166 4.166 20 H 0.138 0.862 21 C -0.144 4.144 22 C -0.121 4.121 23 H 0.119 0.881 24 C -0.125 4.125 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -4.831 18.784 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.238 6.238 17 C 0.335 3.665 18 O -0.403 6.403 19 C -0.185 4.185 20 H 0.156 0.844 21 C -0.181 4.181 22 C -0.139 4.139 23 H 0.137 0.863 24 C -0.182 4.182 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.405 -4.432 18.581 19.604 hybrid contribution 0.878 -0.381 -0.626 1.143 sum -3.527 -4.814 17.955 18.921 Atomic orbital electron populations 1.22232 0.96529 1.01695 1.02417 1.21509 0.93764 0.83956 1.03015 1.48214 1.63836 1.13407 1.07132 1.19326 0.96452 0.93707 0.77549 1.21397 0.96865 1.32189 1.06405 0.92440 1.24931 0.97929 0.94831 0.96333 1.69918 1.35776 1.33270 1.14359 0.86541 0.84691 0.78258 0.77833 1.20234 1.21146 1.20130 1.19707 0.79730 0.87158 0.84294 1.90715 1.44470 1.17495 1.86730 1.22983 1.02682 0.92657 0.84473 1.86558 1.78234 1.44853 1.14202 1.22655 0.73790 0.86004 0.84083 1.90642 1.42846 1.20080 1.86761 1.21824 1.08018 1.00593 0.88081 0.84443 1.23209 0.90646 1.03847 1.00384 1.22515 0.98680 1.01339 0.91390 0.86301 1.21420 1.01465 0.98457 0.96810 0.93149 0.91765 0.91888 0.89400 0.91779 0.94622 0.93710 0.92599 0.88714 0.88749 0.87949 0.87056 0.91685 0.91464 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.56 2.46 -175.06 -0.43 -12.99 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.51 10.93 7.75 -10.99 -0.09 10.84 16 14 O -0.52 -13.58 16.08 -14.10 -0.23 -13.81 16 15 C 0.05 0.83 4.50 36.01 0.16 0.99 16 16 O -0.32 -5.63 9.75 -45.90 -0.45 -6.07 16 17 C 0.49 7.23 7.74 36.00 0.28 7.51 16 18 O -0.51 -8.24 16.01 -18.76 -0.30 -8.54 16 19 C -0.17 -1.82 6.02 -91.77 -0.55 -2.37 16 20 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 21 C -0.14 -1.26 9.88 -26.73 -0.26 -1.52 16 22 C -0.12 -1.06 5.92 -90.62 -0.54 -1.60 16 23 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 24 C -0.12 -0.80 10.19 37.16 0.38 -0.42 16 25 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.43 8.07 -51.93 -0.42 1.02 16 29 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.44 7.39 -51.93 -0.38 1.06 16 34 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -34.19 337.00 -7.32 -41.51 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.00 Total: -2.14 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.71 Total: 5.90 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.31 Total: -38.76 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.97 Total: -28.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.19 -7.32 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060834856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.094 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds