Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47287 * 59.99728 * 9 7 5 11 11 H 1.48508 * 109.47446 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47209 * 299.99931 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 H 1.09001 * 115.54860 * 33.99743 * 19 17 16 21 21 C 1.52999 * 117.49887 * 248.32997 * 19 17 16 22 22 C 1.52996 * 60.00050 * 252.50533 * 21 19 17 23 23 H 1.08997 * 117.49575 * 107.48691 * 22 21 19 24 24 C 1.52995 * 117.50179 * 252.50942 * 22 21 19 25 25 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 26 26 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 27 27 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 29 29 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 30 30 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 31 31 H 1.08992 * 109.47426 * 150.00343 * 4 3 2 32 32 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 34 34 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 35 35 H 1.08998 * 117.50016 * 359.97438 * 21 19 17 36 36 H 1.09005 * 117.49667 * 145.01244 * 21 19 17 37 37 H 1.09005 * 109.47559 * 128.61736 * 24 22 21 38 38 H 1.09002 * 109.47231 * 248.62364 * 24 22 21 39 39 H 1.09006 * 109.47338 * 8.62297 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 6.1417 0.6407 -3.5942 11 1 6.1614 2.7972 -4.7026 12 1 6.8410 2.6206 -2.3811 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 1 2.2220 3.6422 5.8864 21 6 3.6346 2.1972 6.8793 22 6 2.2128 1.9736 7.3983 23 1 1.8503 0.9469 7.4463 24 6 1.7100 2.9037 8.5041 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1386 32 1 3.6755 3.5168 -4.4436 33 1 2.6212 0.4188 2.5302 34 1 0.9432 1.0128 2.5298 35 1 4.2072 1.3174 6.5861 36 1 4.2118 3.0071 7.3256 37 1 0.7460 3.3231 8.2159 38 1 1.5987 2.3399 9.4304 39 1 2.4271 3.7109 8.6541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060834856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = -120.789222 kcal Electronic energy + Delta-G solvation = -20479.756784 eV Core-core repulsion = 17194.670718 eV Total energy + Delta-G solvation = -3285.086066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90891 -40.67993 -38.63135 -37.30130 -36.96401 -34.95260 -31.78741 -30.89583 -29.70884 -28.45113 -25.79079 -24.74570 -24.07621 -22.16878 -21.13753 -20.26998 -19.14638 -18.65875 -18.10781 -17.84313 -17.52979 -16.99978 -16.27660 -16.07235 -15.23107 -15.07208 -14.76115 -14.60359 -14.39751 -13.99996 -13.90486 -13.63345 -13.51166 -13.30100 -13.10640 -12.95725 -12.67186 -12.53535 -12.38945 -12.23907 -12.07932 -11.83192 -11.75204 -11.73661 -11.35843 -11.11212 -10.75520 -10.65372 -9.57346 -8.24300 -6.39178 0.92474 1.20096 1.36766 1.41055 1.48192 1.58424 2.29266 2.42704 2.70856 3.05719 3.39354 3.53862 3.61930 3.75909 3.86865 3.92798 4.10718 4.12736 4.35677 4.37625 4.56482 4.68642 4.83778 4.86225 4.92246 4.93612 4.99420 5.00871 5.15242 5.18355 5.25067 5.33933 5.41161 5.52203 5.77744 6.02593 6.50109 6.62506 6.69640 7.18553 7.34578 8.83104 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.003912 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.067574 B = 7154.876955 C = 7797.478746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.061 3.939 16 O -0.348 6.348 17 C 0.490 3.510 18 O -0.530 6.530 19 C -0.188 4.188 20 H 0.147 0.853 21 C -0.134 4.134 22 C -0.109 4.109 23 H 0.109 0.891 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.030 0.970 31 H -0.001 1.001 32 H 0.268 0.732 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 -6.345 20.512 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.263 6.263 17 C 0.335 3.665 18 O -0.420 6.420 19 C -0.207 4.207 20 H 0.165 0.835 21 C -0.171 4.171 22 C -0.127 4.127 23 H 0.127 0.873 24 C -0.179 4.179 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.930 -6.004 20.327 21.557 hybrid contribution 0.674 0.072 -1.129 1.317 sum -3.256 -5.932 19.198 20.356 Atomic orbital electron populations 1.22175 0.94290 1.03825 1.01830 1.21871 0.95594 0.80954 1.04401 1.48216 1.63535 1.15268 1.05665 1.18792 0.95631 0.91638 0.79706 1.21685 0.97824 1.32408 1.06746 0.92727 1.25857 1.02477 0.94346 0.96340 1.70037 1.37864 1.33975 1.14796 0.85458 0.78871 0.79066 0.77360 1.18396 1.20270 1.20346 1.20536 0.78362 0.86650 0.85848 1.90676 1.47162 1.20175 1.87753 1.22831 1.04624 0.92047 0.82015 1.86570 1.78810 1.45672 1.15248 1.23357 0.73001 0.86315 0.83812 1.90620 1.43731 1.20900 1.86744 1.22015 1.10668 1.00609 0.87424 0.83529 1.23382 0.90540 1.04309 0.98871 1.22611 0.98563 1.01145 0.90396 0.87314 1.21458 1.01699 0.98464 0.96299 0.92518 0.93614 0.88315 0.89896 0.88492 0.95183 0.98279 0.92296 0.86572 0.86127 0.88430 0.84650 0.91642 0.90156 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.33 16 2 C 0.09 2.86 5.93 86.38 0.51 3.37 16 3 N -0.59 -25.57 2.46 -826.15 -2.03 -27.60 16 4 C 0.26 14.28 5.16 85.63 0.44 14.72 16 5 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.05 3.12 7.81 -2.92 -0.02 3.09 16 7 C 0.01 0.52 5.46 84.66 0.46 0.99 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 9 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.50 21.88 7.75 87.66 0.68 22.56 16 14 O -0.58 -31.64 16.08 15.79 0.25 -31.39 16 15 C 0.06 2.00 4.50 71.24 0.32 2.32 16 16 O -0.35 -11.95 9.75 -45.06 -0.44 -12.39 16 17 C 0.49 13.97 7.74 71.23 0.55 14.53 16 18 O -0.53 -16.25 16.01 21.94 0.35 -15.90 16 19 C -0.19 -3.86 6.02 -11.54 -0.07 -3.93 16 20 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 21 C -0.13 -2.07 9.88 30.59 0.30 -1.76 16 22 C -0.11 -1.69 5.92 -10.80 -0.06 -1.75 16 23 H 0.11 1.93 7.67 -2.39 -0.02 1.91 16 24 C -0.12 -1.25 10.19 71.98 0.73 -0.51 16 25 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 29 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 30 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 31 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.12 3.28 7.39 -2.39 -0.02 3.26 16 34 H 0.12 3.28 7.18 -2.38 -0.02 3.26 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.14 1.42 8.05 -2.38 -0.02 1.40 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.59 7.90 -2.38 -0.02 0.57 16 Total: -1.00 -77.03 337.00 6.33 -70.70 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.03 Total: 9.84 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 4.85 Total: 15.66 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.74 Total: -83.52 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: 0.17 Total: -59.68 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.03 6.33 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060834856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.087 kcal (2) G-P(sol) polarization free energy of solvation -77.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds