Wall clock time and date at job start Mon Mar 30 2020 01:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00134 * 2 1 4 4 C 1.50697 * 109.47006 * 270.00373 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.34772 * 120.00280 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00509 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99552 * 0.02562 * 12 2 1 15 15 H 1.09007 * 109.47358 * 299.99386 * 14 12 2 16 16 C 1.52991 * 109.47632 * 59.99998 * 14 12 2 17 17 C 1.53002 * 109.47148 * 59.99668 * 16 14 12 18 18 C 1.52998 * 109.46974 * 60.00622 * 17 16 14 19 19 C 1.53003 * 109.47009 * 300.00043 * 18 17 16 20 20 H 1.09006 * 109.46876 * 299.99794 * 19 18 17 21 21 C 1.50698 * 109.47559 * 180.02562 * 19 18 17 22 22 O 1.20830 * 119.99756 * 240.00397 * 21 19 18 23 23 O 1.34225 * 120.00341 * 59.99321 * 21 19 18 24 24 C 1.52997 * 109.47424 * 59.99828 * 19 18 17 25 25 H 1.09005 * 109.47477 * 89.99576 * 1 2 3 26 26 H 1.08993 * 109.47146 * 209.99880 * 1 2 3 27 27 H 1.09008 * 109.47223 * 329.99803 * 1 2 3 28 28 H 1.08998 * 109.47049 * 149.99802 * 3 2 1 29 29 H 1.09001 * 109.46896 * 30.00073 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47879 * 179.97438 * 16 14 12 32 32 H 1.09003 * 109.47230 * 300.00296 * 16 14 12 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.47377 * 300.00548 * 17 16 14 35 35 H 1.08996 * 109.47655 * 59.99777 * 18 17 16 36 36 H 1.08999 * 109.47459 * 180.02562 * 18 17 16 37 37 H 0.96700 * 117.00605 * 180.02562 * 23 21 19 38 38 H 1.09002 * 109.47289 * 180.02562 * 24 19 18 39 39 H 1.09006 * 109.47122 * 60.00116 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.1016 1.0939 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5481 3.6212 -0.6730 8 14 3.4439 3.4135 -3.4338 9 1 2.3149 4.2539 -3.9073 10 1 4.7036 4.1979 -3.4929 11 1 3.5663 2.2145 -4.3013 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0017 15 1 0.7584 -2.5306 0.8881 16 6 0.5062 -2.5525 -1.2512 17 6 1.3863 -2.4706 -2.5001 18 6 2.3804 -3.6336 -2.5006 19 6 3.2596 -3.5534 -1.2509 20 1 3.8047 -2.6094 -1.2501 21 6 4.2393 -4.6984 -1.2516 22 8 4.2341 -5.4984 -0.3460 23 8 5.1176 -4.8298 -2.2581 24 6 2.3796 -3.6352 -0.0020 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.1499 1.1384 0.5139 29 1 1.6084 2.0284 0.5139 30 1 4.0243 4.4474 -0.8503 31 1 -0.0385 -3.4966 -1.2523 32 1 -0.2021 -1.7240 -1.2510 33 1 0.7599 -2.5274 -3.3904 34 1 1.9313 -1.5267 -2.4993 35 1 1.8355 -4.5775 -2.5014 36 1 3.0077 -3.5750 -3.3900 37 1 5.7259 -5.5802 -2.2149 38 1 3.0059 -3.5776 0.8882 39 1 1.8346 -4.5792 -0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111471120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:08 Heat of formation + Delta-G solvation = -141.055938 kcal Electronic energy + Delta-G solvation = -21939.007230 eV Core-core repulsion = 18653.042333 eV Total energy + Delta-G solvation = -3285.964897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72545 -39.54035 -36.78297 -35.95833 -34.96627 -32.74194 -31.27099 -30.70061 -27.77239 -26.01279 -24.36373 -23.77839 -22.16113 -21.12627 -20.12047 -18.19333 -17.76344 -16.83358 -16.52025 -15.84300 -15.67407 -15.23298 -14.84110 -14.68748 -14.24476 -13.51377 -13.45054 -13.05737 -12.84020 -12.49380 -12.21429 -12.10177 -11.98346 -11.87653 -11.61298 -11.40961 -11.18560 -11.01570 -10.92515 -10.68287 -10.55980 -10.48802 -10.14598 -10.06373 -9.96137 -9.62259 -8.72010 -8.44502 -7.64773 -6.05380 -4.09997 2.35986 3.18452 3.28796 3.35175 3.37289 3.42901 3.95717 4.43306 4.73158 4.82026 4.85579 5.15244 5.24419 5.28421 5.36995 5.41908 5.50921 5.54081 5.65988 5.74409 5.82547 5.93474 5.96299 6.06087 6.08919 6.20655 6.34931 6.36114 6.39550 6.52932 6.62615 7.04820 7.43248 7.53620 7.90910 8.01990 8.22197 8.40716 8.88966 9.08485 9.55125 11.02735 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.006147 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.957131 B = 4554.120757 C = 5091.533802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.511 3.489 13 O -0.541 6.541 14 C -0.110 4.110 15 H 0.095 0.905 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.095 4.095 20 H 0.144 0.856 21 C 0.488 3.512 22 O -0.526 6.526 23 O -0.515 6.515 24 C -0.076 4.076 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 -14.013 -1.963 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.331 5.331 3 C 0.125 3.875 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.298 3.702 13 O -0.420 6.420 14 C -0.132 4.132 15 H 0.113 0.887 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.113 4.113 20 H 0.162 0.838 21 C 0.332 3.668 22 O -0.414 6.414 23 O -0.326 6.326 24 C -0.114 4.114 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.261 0.739 38 H 0.094 0.906 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.089 -13.685 -1.684 15.073 hybrid contribution 0.577 -0.049 -0.898 1.069 sum -5.512 -13.734 -2.583 15.023 Atomic orbital electron populations 1.21780 0.81702 1.01576 1.01021 1.48127 1.06049 1.07859 1.71042 1.19314 0.92573 0.78090 0.97530 1.21403 1.36470 1.06123 0.92246 0.92435 1.24937 0.95406 0.96458 0.97326 1.69932 1.38559 1.14205 1.30707 0.86525 0.77689 0.78630 0.84758 1.20679 1.21128 1.19842 1.20249 0.87970 0.84972 0.77011 1.90572 1.13992 1.86935 1.50494 1.21392 0.97754 0.93896 1.00145 0.88676 1.21802 0.97855 1.02966 0.93350 1.21573 0.97551 0.99355 0.97643 1.21481 0.97362 0.99091 0.96310 1.21458 0.94685 0.97571 0.97621 0.83833 1.23784 0.79423 0.85541 0.78083 1.90666 1.70437 1.43772 1.36571 1.84595 1.46701 1.52720 1.48622 1.21139 0.96392 0.96860 0.97038 0.92840 0.92352 0.91582 0.93871 0.95103 0.92735 0.91360 0.89925 0.91383 0.90379 0.92039 0.90820 0.73898 0.90579 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.85 59.85 0.53 1.77 16 2 N -0.60 -12.08 2.86 -182.95 -0.52 -12.60 16 3 C 0.24 6.22 5.20 -5.19 -0.03 6.19 16 4 C -0.52 -14.42 9.39 -34.44 -0.32 -14.74 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.51 9.98 5.56 -10.99 -0.06 9.92 16 13 O -0.54 -12.76 13.24 5.55 0.07 -12.69 16 14 C -0.11 -1.57 2.21 -91.77 -0.20 -1.77 16 15 H 0.10 1.15 7.40 -51.93 -0.38 0.76 16 16 C -0.12 -1.48 5.09 -26.73 -0.14 -1.61 16 17 C -0.12 -1.67 5.70 -26.73 -0.15 -1.83 16 18 C -0.10 -1.36 5.14 -26.73 -0.14 -1.50 16 19 C -0.09 -1.46 2.33 -91.77 -0.21 -1.67 16 20 H 0.14 2.70 5.51 -51.93 -0.29 2.42 16 21 C 0.49 7.32 7.63 36.00 0.27 7.60 16 22 O -0.53 -8.91 16.74 -18.75 -0.31 -9.23 16 23 O -0.52 -6.39 13.33 -39.25 -0.52 -6.91 16 24 C -0.08 -1.12 3.66 -26.73 -0.10 -1.21 16 25 H 0.05 0.76 6.95 -51.93 -0.36 0.40 16 26 H 0.06 0.67 6.01 -51.93 -0.31 0.36 16 27 H 0.07 0.96 7.89 -51.92 -0.41 0.55 16 28 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 29 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.96 4.53 -51.93 -0.24 0.72 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.35 7.22 -51.93 -0.37 0.98 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.40 3.05 9.10 45.56 0.41 3.47 16 38 H 0.08 1.23 8.06 -51.93 -0.42 0.82 16 39 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -33.68 311.27 -6.34 -40.02 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.82 Total: 3.04 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.64 Total: 2.75 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.21 Total: -38.20 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.76 Total: -28.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.68 -6.34 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111471120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.033 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds