Wall clock time and date at job start Mon Mar 30 2020 01:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00134 * 2 1 4 4 C 1.50697 * 109.47006 * 270.00373 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.34772 * 120.00280 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00509 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99552 * 0.02562 * 12 2 1 15 15 H 1.09007 * 109.47358 * 299.99386 * 14 12 2 16 16 C 1.52991 * 109.47632 * 59.99998 * 14 12 2 17 17 C 1.53002 * 109.47148 * 59.99668 * 16 14 12 18 18 C 1.52998 * 109.46974 * 60.00622 * 17 16 14 19 19 C 1.53003 * 109.47009 * 300.00043 * 18 17 16 20 20 H 1.09006 * 109.46876 * 299.99794 * 19 18 17 21 21 C 1.50698 * 109.47559 * 180.02562 * 19 18 17 22 22 O 1.20830 * 119.99756 * 240.00397 * 21 19 18 23 23 O 1.34225 * 120.00341 * 59.99321 * 21 19 18 24 24 C 1.52997 * 109.47424 * 59.99828 * 19 18 17 25 25 H 1.09005 * 109.47477 * 89.99576 * 1 2 3 26 26 H 1.08993 * 109.47146 * 209.99880 * 1 2 3 27 27 H 1.09008 * 109.47223 * 329.99803 * 1 2 3 28 28 H 1.08998 * 109.47049 * 149.99802 * 3 2 1 29 29 H 1.09001 * 109.46896 * 30.00073 * 3 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47879 * 179.97438 * 16 14 12 32 32 H 1.09003 * 109.47230 * 300.00296 * 16 14 12 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.47377 * 300.00548 * 17 16 14 35 35 H 1.08996 * 109.47655 * 59.99777 * 18 17 16 36 36 H 1.08999 * 109.47459 * 180.02562 * 18 17 16 37 37 H 0.96700 * 117.00605 * 180.02562 * 23 21 19 38 38 H 1.09002 * 109.47289 * 180.02562 * 24 19 18 39 39 H 1.09006 * 109.47122 * 60.00116 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.1016 1.0939 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5481 3.6212 -0.6730 8 14 3.4439 3.4135 -3.4338 9 1 2.3149 4.2539 -3.9073 10 1 4.7036 4.1979 -3.4929 11 1 3.5663 2.2145 -4.3013 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4722 -0.0017 15 1 0.7584 -2.5306 0.8881 16 6 0.5062 -2.5525 -1.2512 17 6 1.3863 -2.4706 -2.5001 18 6 2.3804 -3.6336 -2.5006 19 6 3.2596 -3.5534 -1.2509 20 1 3.8047 -2.6094 -1.2501 21 6 4.2393 -4.6984 -1.2516 22 8 4.2341 -5.4984 -0.3460 23 8 5.1176 -4.8298 -2.2581 24 6 2.3796 -3.6352 -0.0020 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.1499 1.1384 0.5139 29 1 1.6084 2.0284 0.5139 30 1 4.0243 4.4474 -0.8503 31 1 -0.0385 -3.4966 -1.2523 32 1 -0.2021 -1.7240 -1.2510 33 1 0.7599 -2.5274 -3.3904 34 1 1.9313 -1.5267 -2.4993 35 1 1.8355 -4.5775 -2.5014 36 1 3.0077 -3.5750 -3.3900 37 1 5.7259 -5.5802 -2.2149 38 1 3.0059 -3.5776 0.8882 39 1 1.8346 -4.5792 -0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111471120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:07 Heat of formation + Delta-G solvation = -164.690784 kcal Electronic energy + Delta-G solvation = -21940.032114 eV Core-core repulsion = 18653.042333 eV Total energy + Delta-G solvation = -3286.989781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96073 -40.85476 -38.07845 -37.09460 -36.61761 -34.76539 -32.55153 -31.80968 -29.62428 -27.45055 -25.61136 -25.37357 -23.57633 -22.25568 -21.40689 -19.57733 -18.97792 -18.66366 -17.98082 -17.27218 -16.92519 -16.83660 -16.17265 -16.08757 -15.83720 -14.77268 -14.65001 -14.52657 -14.19321 -13.88125 -13.62549 -13.41901 -13.33083 -13.19556 -13.01741 -12.87274 -12.73879 -12.54532 -12.44368 -12.20420 -12.11124 -11.79051 -11.75476 -11.54069 -11.12526 -11.05935 -10.62209 -10.25788 -9.34345 -8.20281 -6.34304 1.17987 1.36554 1.39532 1.49463 1.91006 2.14661 2.35143 2.50947 3.09387 3.63630 3.66309 3.74351 4.05421 4.15463 4.24552 4.33802 4.44540 4.49391 4.55984 4.69622 4.72645 4.80663 4.95020 4.97332 5.02783 5.05660 5.15467 5.21456 5.26615 5.30135 5.37369 5.46337 5.57932 5.63413 5.88928 6.09321 6.73892 6.86372 6.99113 7.31870 7.56454 8.86622 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.006147 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.957131 B = 4554.120757 C = 5091.533802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.258 3.742 4 C -0.533 4.533 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.501 3.499 13 O -0.594 6.594 14 C -0.098 4.098 15 H 0.129 0.871 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.098 4.098 19 C -0.099 4.099 20 H 0.102 0.898 21 C 0.493 3.507 22 O -0.548 6.548 23 O -0.513 6.513 24 C -0.073 4.073 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.065 0.935 28 H -0.006 1.006 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.028 0.972 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.425 0.575 38 H 0.049 0.951 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -15.910 -3.413 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.338 5.338 3 C 0.137 3.863 4 C -0.572 4.572 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.788 3.212 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.196 1.196 12 C 0.291 3.709 13 O -0.476 6.476 14 C -0.119 4.119 15 H 0.146 0.854 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.136 4.136 19 C -0.118 4.118 20 H 0.120 0.880 21 C 0.337 3.663 22 O -0.439 6.439 23 O -0.326 6.326 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.286 0.714 38 H 0.068 0.932 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.536 -15.605 -3.146 18.063 hybrid contribution 1.404 0.517 -0.431 1.557 sum -7.132 -15.088 -3.577 17.068 Atomic orbital electron populations 1.22105 0.78154 1.03817 1.02463 1.48122 1.08241 1.06253 1.71162 1.18752 0.91020 0.80565 0.95996 1.21684 1.36337 1.06131 0.93044 0.92583 1.25851 0.95127 0.96620 1.01702 1.70059 1.39376 1.14710 1.32990 0.85467 0.77958 0.78286 0.79451 1.18811 1.21000 1.19556 1.21338 0.87742 0.86471 0.75349 1.90558 1.16716 1.87843 1.52473 1.21445 0.97642 0.89795 1.03035 0.85360 1.21876 0.97175 1.05595 0.90809 1.21571 0.97774 0.97017 0.99794 1.21476 0.97058 1.00290 0.94739 1.21397 0.95188 0.95708 0.99509 0.88043 1.23684 0.79503 0.85064 0.78010 1.90654 1.71171 1.44681 1.37348 1.84545 1.46657 1.53902 1.47529 1.21143 0.96264 0.98218 0.95504 0.91676 0.87970 0.91583 0.98752 0.96119 0.92570 0.87158 0.88995 0.88941 0.95271 0.89013 0.91168 0.71393 0.93172 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 8.85 127.77 1.13 3.25 16 2 N -0.61 -24.75 2.86 -851.12 -2.43 -27.18 16 3 C 0.26 13.82 5.20 85.63 0.45 14.26 16 4 C -0.53 -30.31 9.39 25.60 0.24 -30.07 16 5 H 0.06 3.12 7.81 -2.92 -0.02 3.10 16 6 C 0.01 0.32 5.46 84.66 0.46 0.78 16 7 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.50 19.87 5.56 87.66 0.49 20.36 16 13 O -0.59 -29.77 13.24 -3.04 -0.04 -29.81 16 14 C -0.10 -2.56 2.21 -11.54 -0.03 -2.58 16 15 H 0.13 2.54 7.40 -2.38 -0.02 2.52 16 16 C -0.12 -2.35 5.09 30.59 0.16 -2.19 16 17 C -0.12 -3.07 5.70 30.59 0.17 -2.89 16 18 C -0.10 -2.34 5.14 30.59 0.16 -2.18 16 19 C -0.10 -3.00 2.33 -11.54 -0.03 -3.03 16 20 H 0.10 4.05 5.51 -2.38 -0.01 4.03 16 21 C 0.49 14.44 7.63 71.24 0.54 14.99 16 22 O -0.55 -18.07 16.74 21.95 0.37 -17.70 16 23 O -0.51 -12.20 13.33 -51.37 -0.68 -12.89 16 24 C -0.07 -2.03 3.66 30.60 0.11 -1.92 16 25 H 0.06 1.67 6.95 -2.38 -0.02 1.65 16 26 H 0.10 1.92 6.01 -2.39 -0.01 1.91 16 27 H 0.07 1.83 7.89 -2.38 -0.02 1.81 16 28 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 29 H 0.02 1.13 7.89 -2.39 -0.02 1.11 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.71 4.53 -2.39 -0.01 1.69 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.03 1.00 7.22 -2.39 -0.02 0.99 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 37 H 0.42 5.80 9.10 -74.06 -0.67 5.13 16 38 H 0.05 1.63 8.06 -2.39 -0.02 1.61 16 39 H 0.10 2.20 8.10 -2.38 -0.02 2.18 16 Total: -1.00 -78.53 311.27 3.77 -74.76 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.39 Total: 13.56 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 3.86 Total: 8.78 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.15 Total: -83.49 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -0.36 Total: -60.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -78.53 3.77 -74.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111471120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.929 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds