Wall clock time and date at job start Mon Mar 30 2020 01:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99869 * 2 1 4 4 C 1.50702 * 112.84862 * 302.33772 * 3 2 1 5 5 O 1.21277 * 119.99686 * 141.86622 * 4 3 2 6 6 N 1.34771 * 120.00149 * 321.86503 * 4 3 2 7 7 C 1.47027 * 125.64576 * 354.69814 * 6 4 3 8 8 C 1.54329 * 107.26976 * 178.90964 * 7 6 4 9 9 C 1.55163 * 102.93924 * 337.80651 * 8 7 6 10 10 O 1.42902 * 111.00333 * 277.42746 * 9 8 7 11 11 C 1.50700 * 111.00068 * 153.61778 * 9 8 7 12 12 H 1.07994 * 119.99915 * 244.57898 * 11 9 8 13 13 C 1.37873 * 120.00252 * 64.58141 * 11 9 8 14 14 N 1.31515 * 120.00123 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00204 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47384 * 89.99764 * 15 13 11 17 17 H 1.48505 * 109.47158 * 210.00093 * 15 13 11 18 18 H 1.48502 * 109.47093 * 329.99541 * 15 13 11 19 19 C 1.47529 * 125.64010 * 174.66007 * 6 4 3 20 20 C 1.53778 * 113.61455 * 73.53629 * 3 2 1 21 21 C 1.53951 * 87.02343 * 89.23099 * 20 3 2 22 22 C 1.53780 * 87.11219 * 25.36084 * 21 20 3 23 23 H 1.08998 * 109.46816 * 294.74822 * 1 2 3 24 24 H 1.08998 * 109.46875 * 54.75316 * 1 2 3 25 25 H 1.09004 * 109.46753 * 174.74892 * 1 2 3 26 26 H 1.08992 * 109.88479 * 59.48830 * 7 6 4 27 27 H 1.09003 * 109.88290 * 298.32228 * 7 6 4 28 28 H 1.09000 * 110.72103 * 219.44645 * 8 7 6 29 29 H 1.08998 * 110.71882 * 96.16955 * 8 7 6 30 30 H 0.96705 * 114.00051 * 295.41888 * 10 9 8 31 31 H 0.97003 * 120.00063 * 180.02562 * 14 13 11 32 32 H 1.08994 * 110.36865 * 85.33898 * 19 6 4 33 33 H 1.09000 * 110.40715 * 322.98599 * 19 6 4 34 34 H 1.09004 * 113.61240 * 203.75197 * 20 3 2 35 35 H 1.09005 * 113.61733 * 334.64683 * 20 3 2 36 36 H 1.09005 * 113.53428 * 270.81373 * 21 20 3 37 37 H 1.08994 * 113.74558 * 139.94597 * 21 20 3 38 38 H 1.08996 * 113.61573 * 220.09639 * 22 21 20 39 39 H 1.08994 * 113.61395 * 89.18775 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5696 2.1422 -1.1734 5 8 1.3581 3.3274 -1.0275 6 7 1.4106 1.5733 -2.3848 7 6 1.7356 0.1808 -2.7269 8 6 1.3634 -0.0254 -4.2103 9 6 0.3244 1.0980 -4.4672 10 8 -0.9771 0.7018 -4.0300 11 6 0.3054 1.4938 -5.9212 12 1 0.6053 2.4892 -6.2138 13 6 -0.0949 0.5853 -6.8779 14 7 -0.4597 -0.6270 -6.5216 15 14 -0.1178 1.0757 -8.6802 16 1 1.1985 0.7666 -9.2941 17 1 -1.1830 0.3188 -9.3857 18 1 -0.3873 2.5317 -8.7937 19 6 0.8808 2.2447 -3.5869 20 6 1.8960 2.0306 1.3512 21 6 3.2389 1.3770 1.7246 22 6 3.5327 1.3019 0.2170 23 1 -0.3633 0.4302 0.9333 24 1 -0.3633 0.5931 -0.8393 25 1 -0.3633 -1.0234 -0.0941 26 1 1.1573 -0.4992 -2.1015 27 1 2.8015 0.0032 -2.5840 28 1 0.9152 -1.0073 -4.3626 29 1 2.2373 0.1041 -4.8488 30 1 -1.3460 -0.0457 -4.5202 31 1 -0.7409 -1.2663 -7.1947 32 1 1.6788 2.7716 -4.1099 33 1 0.0828 2.9360 -3.3156 34 1 1.9466 3.1164 1.2697 35 1 1.0589 1.6895 1.9605 36 1 3.1312 0.4008 2.1975 37 1 3.9129 2.0387 2.2684 38 1 4.0150 0.3734 -0.0882 39 1 4.0316 2.1881 -0.1752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:08 Heat of formation + Delta-G solvation = -119.390581 kcal Electronic energy + Delta-G solvation = -22250.701571 eV Core-core repulsion = 18965.676154 eV Total energy + Delta-G solvation = -3285.025417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96222 -39.86818 -38.61557 -36.82173 -35.93354 -34.18914 -31.62876 -30.11774 -28.41298 -27.55350 -26.69300 -25.98470 -23.82784 -21.80620 -21.07015 -20.23376 -19.20650 -18.63767 -17.33541 -17.02949 -16.88041 -16.71179 -16.29897 -16.02899 -15.37749 -15.22986 -15.04857 -14.80191 -14.04322 -13.90874 -13.63544 -13.38911 -13.25193 -13.02754 -12.92414 -12.72344 -12.58559 -12.48913 -12.35445 -12.26260 -11.89451 -11.81914 -11.73281 -11.31807 -11.08108 -10.68406 -10.32635 -10.16436 -9.60405 -8.25637 -6.40476 1.38348 1.41604 1.44809 1.53577 1.96209 2.39224 2.49514 2.99123 3.36622 3.48511 3.62015 3.78771 3.80725 4.02001 4.25752 4.29989 4.33882 4.39648 4.43149 4.54857 4.66023 4.69000 4.77422 4.80319 4.90353 4.95362 5.02464 5.06916 5.15090 5.21864 5.33249 5.43632 5.50180 5.75540 5.94468 6.05257 6.55530 6.63208 7.01252 7.30330 7.40251 8.80647 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038337 B = 0.005252 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.182319 B = 5329.626221 C = 5507.915184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.065 3.935 4 C 0.505 3.495 5 O -0.585 6.585 6 N -0.600 5.600 7 C 0.111 3.889 8 C -0.128 4.128 9 C 0.239 3.761 10 O -0.592 6.592 11 C -0.564 4.564 12 H 0.054 0.946 13 C 0.039 3.961 14 N -0.907 5.907 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.277 1.277 19 C 0.122 3.878 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.113 4.113 23 H 0.058 0.942 24 H 0.021 0.979 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.380 0.620 31 H 0.272 0.728 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -2.394 12.644 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.267 6.267 3 C 0.022 3.978 4 C 0.294 3.706 5 O -0.467 6.467 6 N -0.332 5.332 7 C -0.010 4.010 8 C -0.167 4.167 9 C 0.198 3.802 10 O -0.401 6.401 11 C -0.602 4.602 12 H 0.072 0.928 13 C -0.163 4.163 14 N -0.546 5.546 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.202 1.202 19 C 0.000 4.000 20 C -0.183 4.183 21 C -0.148 4.148 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.130 0.870 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.491 -1.618 13.140 14.745 hybrid contribution -0.748 0.118 -1.893 2.039 sum 5.743 -1.500 11.246 12.716 Atomic orbital electron populations 1.22920 0.80035 1.04135 1.00229 1.87899 1.20619 1.23796 1.94381 1.23077 0.98672 0.84151 0.91902 1.21482 0.77100 0.88108 0.83892 1.90617 1.53774 1.17446 1.84850 1.48767 1.61392 1.13737 1.09269 1.22240 1.00479 0.81407 0.96909 1.23009 0.99714 1.01077 0.92915 1.19710 0.80712 0.89329 0.90412 1.86093 1.34543 1.55724 1.63756 1.21671 1.47005 0.99379 0.92127 0.92754 1.25588 0.93231 0.94556 1.02923 1.69709 1.44202 1.04995 1.35686 0.85524 0.78064 0.78138 0.79671 1.19742 1.20475 1.20191 1.22199 0.96713 0.95885 0.85250 1.23434 1.00633 1.00824 0.93405 1.22752 0.95305 1.02168 0.94590 1.23021 0.89473 1.04142 0.98418 0.92324 0.96000 0.87039 0.90276 0.90589 0.90766 0.92045 0.77007 0.91834 0.91132 0.93655 0.89241 0.89828 0.88164 0.88700 0.88548 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.44 113.37 1.07 1.70 16 2 O -0.35 -9.83 8.54 -148.98 -1.27 -11.10 16 3 C 0.07 1.89 0.78 -11.01 -0.01 1.88 16 4 C 0.50 19.51 5.97 87.66 0.52 20.03 16 5 O -0.59 -26.22 16.19 -3.02 -0.05 -26.27 16 6 N -0.60 -24.38 2.86 -811.54 -2.32 -26.71 16 7 C 0.11 4.11 5.86 86.73 0.51 4.62 16 8 C -0.13 -5.56 5.51 31.79 0.18 -5.38 16 9 C 0.24 11.68 0.88 -10.15 -0.01 11.67 16 10 O -0.59 -30.43 13.17 -148.98 -1.96 -32.39 16 11 C -0.56 -29.71 8.25 25.60 0.21 -29.50 16 12 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 13 C 0.04 1.96 5.29 84.65 0.45 2.41 16 14 N -0.91 -46.12 10.76 21.45 0.23 -45.89 16 15 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.12 5.69 6.07 86.83 0.53 6.21 16 20 C -0.14 -3.51 7.11 31.18 0.22 -3.29 16 21 C -0.11 -1.98 8.02 31.18 0.25 -1.73 16 22 C -0.11 -2.54 7.46 31.12 0.23 -2.31 16 23 H 0.06 1.39 7.30 -2.39 -0.02 1.37 16 24 H 0.02 0.75 6.56 -2.39 -0.02 0.74 16 25 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 26 H 0.08 2.81 5.50 -2.39 -0.01 2.80 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 3.35 7.68 -2.39 -0.02 3.33 16 29 H 0.06 2.68 8.03 -2.39 -0.02 2.66 16 30 H 0.38 19.57 7.25 -74.05 -0.54 19.03 16 31 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 32 H 0.07 3.22 8.03 -2.39 -0.02 3.20 16 33 H 0.04 2.27 8.09 -2.39 -0.02 2.25 16 34 H 0.09 2.43 7.35 -2.39 -0.02 2.41 16 35 H 0.08 1.85 7.30 -2.38 -0.02 1.83 16 36 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 Total: -1.00 -60.30 311.01 1.32 -58.99 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.52 Total: 34.02 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.15 Total: 6.30 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -2.09 Total: -72.59 kcal Atomic # 8 Polarization: -66.48 SS G_CDS: -3.28 Total: -69.76 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -60.30 1.32 -58.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.403 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds