Wall clock time and date at job start Mon Mar 30 2020 01:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99829 * 2 1 4 4 O 1.20824 * 120.00446 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99952 * 179.97438 * 3 2 1 6 6 O 1.42896 * 110.27302 * 327.09232 * 5 3 2 7 7 C 1.54594 * 110.30676 * 89.28552 * 5 3 2 8 8 C 1.54934 * 102.92015 * 140.87485 * 7 5 3 9 9 N 1.48532 * 103.22759 * 322.58179 * 8 7 5 10 10 C 1.46907 * 111.00290 * 159.72064 * 9 8 7 11 11 C 1.52998 * 109.46929 * 57.94716 * 10 9 8 12 12 C 1.50702 * 115.55123 * 54.79402 * 11 10 9 13 13 H 1.08003 * 120.00025 * 264.80280 * 12 11 10 14 14 C 1.37880 * 120.00160 * 84.79242 * 12 11 10 15 15 N 1.31520 * 119.99679 * 353.50690 * 14 12 11 16 16 Si 1.86798 * 120.00172 * 173.50573 * 14 12 11 17 17 H 1.48497 * 109.47143 * 60.00176 * 16 14 12 18 18 H 1.48498 * 109.46665 * 300.00107 * 16 14 12 19 19 H 1.48501 * 109.47124 * 180.02562 * 16 14 12 20 20 C 1.52993 * 117.50095 * 200.46363 * 11 10 9 21 21 C 1.52998 * 117.50082 * 269.12438 * 11 10 9 22 22 C 1.47901 * 105.81724 * 39.21133 * 9 8 7 23 23 H 1.08999 * 109.46610 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47234 * 299.99874 * 1 2 3 25 25 H 1.09000 * 109.47087 * 59.99982 * 1 2 3 26 26 H 0.96698 * 114.00703 * 57.91065 * 6 5 3 27 27 H 1.08998 * 110.72352 * 259.22873 * 7 5 3 28 28 H 1.08999 * 110.72342 * 22.33920 * 7 5 3 29 29 H 1.09006 * 110.66853 * 204.15083 * 8 7 5 30 30 H 1.08998 * 110.67114 * 81.02281 * 8 7 5 31 31 H 1.08998 * 109.46779 * 297.95245 * 10 9 8 32 32 H 1.08996 * 109.47450 * 177.94762 * 10 9 8 33 33 H 0.97003 * 119.99864 * 2.73199 * 15 14 12 34 34 H 1.09003 * 117.50182 * 215.00225 * 20 11 10 35 35 H 1.08997 * 117.50176 * 0.02769 * 20 11 10 36 36 H 1.09000 * 117.49813 * 359.97438 * 21 11 10 37 37 H 1.09005 * 117.50076 * 144.96967 * 21 11 10 38 38 H 1.09005 * 109.91956 * 94.02371 * 22 9 8 39 39 H 1.09001 * 109.91754 * 215.31221 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 8 4.1194 0.1772 0.7293 7 6 4.1036 1.2847 -1.4489 8 6 5.2709 2.3010 -1.3789 9 7 4.7613 3.3403 -0.4481 10 6 5.8653 4.1260 0.1194 11 6 6.6658 4.7724 -1.0129 12 6 5.8675 5.6130 -1.9757 13 1 5.5045 5.1814 -2.8968 14 6 5.6002 6.9331 -1.6807 15 7 5.9296 7.4240 -0.5059 16 14 4.7703 8.0242 -2.9496 17 1 3.4420 7.4581 -3.2963 18 1 5.6131 8.0929 -4.1703 19 1 4.5967 9.3892 -2.3910 20 6 8.0950 5.2206 -0.7011 21 6 7.8527 3.9882 -1.5760 22 6 4.0313 2.6101 0.6109 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.8607 -0.6906 0.3899 27 1 4.4685 0.2972 -1.7317 28 1 3.3346 1.6236 -2.1431 29 1 5.4683 2.7286 -2.3620 30 1 6.1675 1.8301 -0.9760 31 1 6.5173 3.4713 0.6976 32 1 5.4620 4.9029 0.7688 33 1 6.3961 6.8687 0.1383 34 1 8.4579 6.1235 -1.1923 35 1 8.4652 5.0545 0.3106 36 1 8.0635 3.0119 -1.1396 37 1 8.0559 4.0799 -2.6430 38 1 4.6935 2.4215 1.4559 39 1 3.1678 3.1910 0.9348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880566788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:25 Heat of formation + Delta-G solvation = -97.056647 kcal Electronic energy + Delta-G solvation = -21710.439277 eV Core-core repulsion = 18426.382332 eV Total energy + Delta-G solvation = -3284.056945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94215 -38.87841 -37.04406 -36.58717 -35.15213 -31.73720 -30.82414 -28.87800 -27.87430 -25.59925 -24.56621 -22.81088 -21.48630 -21.02105 -20.08029 -19.26388 -18.53689 -17.19161 -16.71648 -16.39053 -15.78824 -15.17155 -14.64719 -14.03364 -13.86695 -13.63226 -13.59408 -13.38372 -13.21391 -12.49817 -12.32188 -12.15605 -12.00639 -11.91760 -11.58056 -11.24526 -10.95115 -10.88785 -10.72877 -10.65628 -10.60205 -10.38680 -10.01309 -9.95020 -9.44584 -8.42740 -8.37102 -8.18424 -7.67067 -6.19988 -3.89516 2.05106 2.47616 3.52228 3.55671 3.72645 3.90873 4.35800 4.52196 4.59616 4.65247 4.83246 4.92370 5.00570 5.20306 5.30827 5.40229 5.47112 5.53571 5.72357 5.76383 5.93936 6.05082 6.13996 6.20996 6.23957 6.31659 6.36062 6.40503 6.58054 6.71762 6.90458 7.26051 7.28753 7.29968 7.51340 7.65045 7.77912 8.40423 8.57099 9.02673 9.81953 11.20143 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.005745 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.399054 B = 4872.518230 C = 5621.383997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.443 3.557 4 O -0.482 6.482 5 C 0.141 3.859 6 O -0.540 6.540 7 C -0.141 4.141 8 C 0.051 3.949 9 N -0.478 5.478 10 C 0.089 3.911 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.026 3.974 15 N -0.911 5.911 16 Si 1.065 2.935 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.180 4.180 21 C -0.200 4.200 22 C 0.051 3.949 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.384 0.616 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.007 0.993 32 H 0.073 0.927 33 H 0.272 0.728 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -16.242 0.654 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.284 3.716 4 O -0.367 6.367 5 C 0.098 3.902 6 O -0.346 6.346 7 C -0.179 4.179 8 C -0.077 4.077 9 N -0.201 5.201 10 C -0.038 4.038 11 C 0.029 3.971 12 C -0.583 4.583 13 H 0.069 0.931 14 C -0.178 4.178 15 N -0.547 5.547 16 Si 0.894 3.106 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.211 1.211 20 C -0.218 4.218 21 C -0.237 4.237 22 C -0.077 4.077 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.233 0.767 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.755 -13.528 0.498 15.129 hybrid contribution 0.639 -2.587 0.431 2.699 sum -6.116 -16.115 0.929 17.262 Atomic orbital electron populations 1.23267 0.76315 1.03555 1.02747 1.86459 1.23611 1.33736 1.84300 1.24615 0.92628 0.81665 0.72734 1.90721 1.66348 1.36093 1.43511 1.22076 0.83204 0.90211 0.94750 1.86629 1.73600 1.16452 1.57907 1.23218 1.00063 1.01201 0.93460 1.23135 0.94051 0.90698 0.99803 1.64876 1.24502 1.18533 1.12232 1.21974 0.90421 0.95096 0.96357 1.19076 0.85943 0.96809 0.95254 1.21038 1.36410 0.96115 1.04758 0.93114 1.25648 0.96552 0.96419 0.99221 1.70748 1.37337 1.41042 1.05539 0.83601 0.76145 0.76100 0.74750 1.21478 1.21771 1.21059 1.22778 1.03467 0.97649 0.97937 1.22948 1.08441 0.93850 0.98473 1.22959 1.00790 0.88858 0.95119 0.88128 0.91843 0.91783 0.76713 0.89617 0.89616 0.88559 0.93869 0.97504 0.90842 0.91727 0.89724 0.91778 0.91886 0.90218 0.92128 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.36 9.98 -44.34 -0.44 -4.80 16 3 C 0.44 6.67 6.76 36.01 0.24 6.92 16 4 O -0.48 -8.82 15.35 -18.75 -0.29 -9.10 16 5 C 0.14 2.09 1.34 -90.42 -0.12 1.97 16 6 O -0.54 -6.94 12.87 -48.78 -0.63 -7.57 16 7 C -0.14 -2.01 6.35 -24.87 -0.16 -2.17 16 8 C 0.05 0.90 5.05 -1.90 -0.01 0.89 16 9 N -0.48 -9.88 5.05 -230.45 -1.16 -11.04 16 10 C 0.09 2.00 4.70 -3.82 -0.02 1.98 16 11 C 0.03 0.72 0.40 -155.66 -0.06 0.66 16 12 C -0.55 -14.90 8.52 -34.44 -0.29 -15.20 16 13 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 14 C 0.03 0.74 5.39 -17.82 -0.10 0.65 16 15 N -0.91 -27.11 13.56 55.43 0.75 -26.36 16 16 Si 1.06 25.64 29.91 -169.99 -5.08 20.55 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.18 -4.13 8.76 -26.70 -0.23 -4.37 16 21 C -0.20 -4.24 8.77 -26.70 -0.23 -4.47 16 22 C 0.05 0.92 6.05 -2.76 -0.02 0.91 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.38 3.30 8.65 45.56 0.39 3.70 16 27 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 29 H 0.10 1.84 7.79 -51.93 -0.40 1.44 16 30 H 0.04 0.74 7.39 -51.93 -0.38 0.36 16 31 H 0.01 0.14 7.91 -51.93 -0.41 -0.27 16 32 H 0.07 1.81 7.71 -51.93 -0.40 1.41 16 33 H 0.27 7.98 6.11 -40.82 -0.25 7.73 16 34 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.21 7.61 -51.93 -0.40 0.81 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.06 1.07 7.48 -51.93 -0.39 0.68 16 39 H 0.10 1.95 6.76 -51.93 -0.35 1.60 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -32.21 320.66 -7.11 -39.33 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.16 Total: 5.01 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.41 Total: -37.40 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.36 Total: -21.48 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.21 -7.11 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880566788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.730 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds