Wall clock time and date at job start Mon Mar 30 2020 01:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99829 * 2 1 4 4 O 1.20824 * 120.00446 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99952 * 179.97438 * 3 2 1 6 6 O 1.42896 * 110.27302 * 327.09232 * 5 3 2 7 7 C 1.54594 * 110.30676 * 89.28552 * 5 3 2 8 8 C 1.54934 * 102.92015 * 140.87485 * 7 5 3 9 9 N 1.48532 * 103.22759 * 322.58179 * 8 7 5 10 10 C 1.46907 * 111.00290 * 159.72064 * 9 8 7 11 11 C 1.52998 * 109.46929 * 57.94716 * 10 9 8 12 12 C 1.50702 * 115.55123 * 54.79402 * 11 10 9 13 13 H 1.08003 * 120.00025 * 264.80280 * 12 11 10 14 14 C 1.37880 * 120.00160 * 84.79242 * 12 11 10 15 15 N 1.31520 * 119.99679 * 353.50690 * 14 12 11 16 16 Si 1.86798 * 120.00172 * 173.50573 * 14 12 11 17 17 H 1.48497 * 109.47143 * 60.00176 * 16 14 12 18 18 H 1.48498 * 109.46665 * 300.00107 * 16 14 12 19 19 H 1.48501 * 109.47124 * 180.02562 * 16 14 12 20 20 C 1.52993 * 117.50095 * 200.46363 * 11 10 9 21 21 C 1.52998 * 117.50082 * 269.12438 * 11 10 9 22 22 C 1.47901 * 105.81724 * 39.21133 * 9 8 7 23 23 H 1.08999 * 109.46610 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47234 * 299.99874 * 1 2 3 25 25 H 1.09000 * 109.47087 * 59.99982 * 1 2 3 26 26 H 0.96698 * 114.00703 * 57.91065 * 6 5 3 27 27 H 1.08998 * 110.72352 * 259.22873 * 7 5 3 28 28 H 1.08999 * 110.72342 * 22.33920 * 7 5 3 29 29 H 1.09006 * 110.66853 * 204.15083 * 8 7 5 30 30 H 1.08998 * 110.67114 * 81.02281 * 8 7 5 31 31 H 1.08998 * 109.46779 * 297.95245 * 10 9 8 32 32 H 1.08996 * 109.47450 * 177.94762 * 10 9 8 33 33 H 0.97003 * 119.99864 * 2.73199 * 15 14 12 34 34 H 1.09003 * 117.50182 * 215.00225 * 20 11 10 35 35 H 1.08997 * 117.50176 * 0.02769 * 20 11 10 36 36 H 1.09000 * 117.49813 * 359.97438 * 21 11 10 37 37 H 1.09005 * 117.50076 * 144.96967 * 21 11 10 38 38 H 1.09005 * 109.91956 * 94.02371 * 22 9 8 39 39 H 1.09001 * 109.91754 * 215.31221 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 8 4.1194 0.1772 0.7293 7 6 4.1036 1.2847 -1.4489 8 6 5.2709 2.3010 -1.3789 9 7 4.7613 3.3403 -0.4481 10 6 5.8653 4.1260 0.1194 11 6 6.6658 4.7724 -1.0129 12 6 5.8675 5.6130 -1.9757 13 1 5.5045 5.1814 -2.8968 14 6 5.6002 6.9331 -1.6807 15 7 5.9296 7.4240 -0.5059 16 14 4.7703 8.0242 -2.9496 17 1 3.4420 7.4581 -3.2963 18 1 5.6131 8.0929 -4.1703 19 1 4.5967 9.3892 -2.3910 20 6 8.0950 5.2206 -0.7011 21 6 7.8527 3.9882 -1.5760 22 6 4.0313 2.6101 0.6109 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.8607 -0.6906 0.3899 27 1 4.4685 0.2972 -1.7317 28 1 3.3346 1.6236 -2.1431 29 1 5.4683 2.7286 -2.3620 30 1 6.1675 1.8301 -0.9760 31 1 6.5173 3.4713 0.6976 32 1 5.4620 4.9029 0.7688 33 1 6.3961 6.8687 0.1383 34 1 8.4579 6.1235 -1.1923 35 1 8.4652 5.0545 0.3106 36 1 8.0635 3.0119 -1.1396 37 1 8.0559 4.0799 -2.6430 38 1 4.6935 2.4215 1.4559 39 1 3.1678 3.1910 0.9348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880566788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:25 Heat of formation + Delta-G solvation = -120.503319 kcal Electronic energy + Delta-G solvation = -21711.456001 eV Core-core repulsion = 18426.382332 eV Total energy + Delta-G solvation = -3285.073669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.11326 -40.23628 -38.60495 -37.71131 -36.52945 -33.84328 -32.18175 -30.12142 -28.86762 -27.26664 -26.51677 -24.04359 -23.11655 -22.56320 -21.30428 -21.15600 -19.66411 -18.54754 -18.25983 -17.59252 -17.05478 -16.51205 -15.79815 -15.77626 -15.57989 -15.39572 -15.02192 -14.45440 -14.38312 -14.23700 -14.00565 -13.53042 -13.23423 -13.18461 -12.90400 -12.61939 -12.56844 -12.48373 -12.40046 -12.17545 -11.93693 -11.90915 -11.82641 -11.28666 -11.10010 -10.40168 -10.36417 -10.16687 -9.22959 -8.41608 -6.10162 0.88405 1.45268 1.55674 1.63650 1.81046 2.64155 2.73160 3.11514 3.20450 3.33089 3.36256 3.46122 3.72032 4.12313 4.16578 4.25527 4.26714 4.28326 4.29386 4.48086 4.50958 4.53344 4.65165 4.66637 4.75804 4.80885 4.84892 4.93143 5.03136 5.11733 5.16096 5.44150 5.51554 5.99619 6.11491 6.31413 6.40737 6.42906 6.63590 6.85145 7.66970 8.99624 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.005745 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.399054 B = 4872.518230 C = 5621.383997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.449 3.551 4 O -0.523 6.523 5 C 0.152 3.848 6 O -0.539 6.539 7 C -0.130 4.130 8 C 0.051 3.949 9 N -0.507 5.507 10 C 0.104 3.896 11 C 0.002 3.998 12 C -0.545 4.545 13 H 0.039 0.961 14 C -0.023 4.023 15 N -0.940 5.940 16 Si 1.104 2.896 17 H -0.282 1.282 18 H -0.272 1.272 19 H -0.290 1.290 20 C -0.185 4.185 21 C -0.168 4.168 22 C 0.050 3.950 23 H 0.142 0.858 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.406 0.594 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -19.080 -0.063 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.291 3.709 4 O -0.411 6.411 5 C 0.108 3.892 6 O -0.348 6.348 7 C -0.168 4.168 8 C -0.076 4.076 9 N -0.231 5.231 10 C -0.024 4.024 11 C 0.001 3.999 12 C -0.583 4.583 13 H 0.057 0.943 14 C -0.222 4.222 15 N -0.578 5.578 16 Si 0.929 3.071 17 H -0.208 1.208 18 H -0.198 1.198 19 H -0.215 1.215 20 C -0.223 4.223 21 C -0.205 4.205 22 C -0.079 4.079 23 H 0.159 0.841 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.258 0.742 27 H 0.147 0.853 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.878 -16.432 -0.234 17.815 hybrid contribution 0.638 -1.821 0.671 2.043 sum -6.240 -18.253 0.437 19.295 Atomic orbital electron populations 1.23624 0.74432 1.06144 1.02455 1.86444 1.25305 1.31688 1.83404 1.24616 0.92701 0.81897 0.71708 1.90714 1.67203 1.37624 1.45573 1.21645 0.83281 0.89420 0.94817 1.86599 1.73293 1.17163 1.57782 1.23197 0.98459 1.02306 0.92798 1.23110 0.95870 0.90630 0.98015 1.64708 1.24349 1.20463 1.13591 1.21649 0.90807 0.94675 0.95315 1.19105 0.86451 0.98269 0.96030 1.21279 1.35846 0.96445 1.04743 0.94276 1.26801 0.97090 0.98301 1.00031 1.70842 1.39331 1.41213 1.06392 0.83082 0.75956 0.74464 0.73635 1.20791 1.19751 1.21539 1.22707 1.02760 0.97818 0.99053 1.22922 1.04947 0.94281 0.98312 1.22808 0.99745 0.90444 0.94861 0.84050 0.92273 0.92085 0.74176 0.85348 0.90295 0.90412 0.92797 0.95880 0.94403 0.92696 0.92108 0.90253 0.88937 0.90225 0.91907 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.47 9.98 -46.54 -0.46 -7.93 16 3 C 0.45 12.85 6.76 71.24 0.48 13.33 16 4 O -0.52 -19.14 15.35 21.97 0.34 -18.81 16 5 C 0.15 4.21 1.34 -10.66 -0.01 4.20 16 6 O -0.54 -12.00 12.87 -136.03 -1.75 -13.76 16 7 C -0.13 -3.33 6.35 31.80 0.20 -3.13 16 8 C 0.05 1.71 5.05 86.65 0.44 2.15 16 9 N -0.51 -20.96 5.05 -883.01 -4.46 -25.42 16 10 C 0.10 4.69 4.70 86.30 0.41 5.10 16 11 C 0.00 0.10 0.40 -52.93 -0.02 0.08 16 12 C -0.54 -30.20 8.52 25.60 0.22 -29.98 16 13 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 14 C -0.02 -1.35 5.39 84.65 0.46 -0.90 16 15 N -0.94 -57.56 13.56 21.45 0.29 -57.27 16 16 Si 1.10 52.37 29.91 68.60 2.05 54.42 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 C -0.19 -8.46 8.76 30.61 0.27 -8.19 16 21 C -0.17 -6.81 8.77 30.62 0.27 -6.54 16 22 C 0.05 1.79 6.05 86.45 0.52 2.31 16 23 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.00 8.13 -2.39 -0.02 0.99 16 25 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 26 H 0.41 5.14 8.65 -74.06 -0.64 4.50 16 27 H 0.13 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.08 2.16 7.85 -2.39 -0.02 2.14 16 29 H 0.08 2.89 7.79 -2.38 -0.02 2.87 16 30 H 0.05 1.69 7.39 -2.39 -0.02 1.67 16 31 H 0.02 0.95 7.91 -2.39 -0.02 0.93 16 32 H 0.04 1.94 7.71 -2.39 -0.02 1.92 16 33 H 0.26 16.03 6.11 -92.71 -0.57 15.46 16 34 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.09 3.23 7.61 -2.39 -0.02 3.21 16 37 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.06 2.19 7.48 -2.38 -0.02 2.17 16 39 H 0.08 3.14 6.76 -2.39 -0.02 3.13 16 Total: -1.00 -71.42 320.66 1.04 -70.38 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.61 Total: 18.34 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.42 Total: -19.96 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -4.16 Total: -82.68 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.88 Total: -40.50 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -71.42 1.04 -70.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880566788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.128 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds