Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47101 * 2 1 4 4 C 1.46503 * 119.99640 * 270.00209 * 3 2 1 5 5 C 1.50704 * 109.46737 * 269.99433 * 4 3 2 6 6 H 1.07990 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99342 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00610 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99557 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46980 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46909 * 209.99851 * 9 7 5 12 12 H 1.48496 * 109.47165 * 330.00197 * 9 7 5 13 13 C 1.34772 * 120.00233 * 89.99509 * 3 2 1 14 14 O 1.21277 * 120.00379 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00096 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47386 * 179.97438 * 15 13 3 17 17 C 1.34222 * 116.99913 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00567 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99780 * 179.97438 * 17 16 15 20 20 H 1.09004 * 115.55360 * 34.33038 * 19 17 16 21 21 C 1.52999 * 117.51964 * 248.62470 * 19 17 16 22 22 C 1.53001 * 60.00190 * 252.51996 * 21 19 17 23 23 H 1.09002 * 117.49822 * 252.51020 * 22 21 19 24 24 C 1.53003 * 117.51964 * 107.47982 * 22 21 19 25 25 H 1.09002 * 109.46685 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47263 * 299.99693 * 1 2 3 27 27 H 1.08993 * 109.46949 * 60.00381 * 1 2 3 28 28 H 1.08997 * 109.47304 * 239.99757 * 2 1 3 29 29 H 1.09006 * 109.47248 * 119.99637 * 2 1 3 30 30 H 1.09000 * 109.47408 * 29.99812 * 4 3 2 31 31 H 1.09002 * 109.46840 * 149.99991 * 4 3 2 32 32 H 0.97000 * 119.99880 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46859 * 59.99490 * 15 13 3 34 34 H 1.09003 * 109.46960 * 299.99751 * 15 13 3 35 35 H 1.09001 * 117.50150 * 145.03255 * 21 19 17 36 36 H 1.08995 * 117.49529 * 0.02562 * 21 19 17 37 37 H 1.09005 * 109.46643 * 351.28298 * 24 22 21 38 38 H 1.08996 * 109.47432 * 111.28196 * 24 22 21 39 39 H 1.09000 * 109.47232 * 231.28796 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9134 2.0965 -3.4170 10 1 5.9761 0.8759 -4.2606 11 1 6.3928 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2201 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 8 2.3071 2.1956 3.5760 17 6 2.1370 1.7116 4.8163 18 8 1.7378 0.5822 4.9747 19 6 2.4440 2.5768 6.0114 20 1 2.2312 3.6389 5.8900 21 6 3.6487 2.1915 6.8722 22 6 2.2296 1.9675 7.3984 23 1 1.8759 2.6287 8.1894 24 6 1.7200 0.5264 7.4659 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 3.6757 3.5177 -4.4431 33 1 2.6227 0.4189 2.5299 34 1 0.9443 1.0116 2.5302 35 1 4.2286 3.0002 7.3171 36 1 4.2198 1.3124 6.5740 37 1 2.4294 -0.1336 6.9664 38 1 1.6164 0.2261 8.5085 39 1 0.7513 0.4600 6.9706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918866274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -96.173628 kcal Electronic energy + Delta-G solvation = -20685.653731 eV Core-core repulsion = 17401.635077 eV Total energy + Delta-G solvation = -3284.018654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77404 -39.10843 -37.63027 -35.95395 -35.29383 -32.84896 -30.19677 -29.53299 -28.67554 -26.68558 -24.71487 -23.08282 -22.52797 -21.46240 -20.16462 -18.61018 -17.89387 -16.72771 -16.49176 -16.34019 -16.07200 -15.32168 -15.15304 -14.44900 -14.23546 -13.56903 -13.44186 -13.38215 -12.98677 -12.82564 -12.61228 -12.28398 -12.12254 -12.06245 -11.76877 -11.63056 -11.23867 -10.94795 -10.88044 -10.61441 -10.58973 -10.52873 -10.43774 -10.15399 -10.12450 -9.66832 -8.99421 -8.45510 -7.75893 -6.06454 -4.11420 2.03875 2.43209 3.24870 3.29563 3.36410 3.41367 3.47072 3.85777 4.31589 4.42837 4.50901 4.61728 4.86954 4.90226 5.06603 5.15731 5.21746 5.28229 5.36029 5.43351 5.53946 5.57985 5.63994 5.72411 5.73830 5.84204 5.98816 6.17732 6.18478 6.43260 6.45854 6.99234 7.39052 7.46769 7.75030 7.89747 8.19714 8.29285 8.84147 8.98943 9.53702 11.01704 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.004087 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.696175 B = 6849.579240 C = 7467.392456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.326 6.326 17 C 0.490 3.510 18 O -0.508 6.508 19 C -0.168 4.168 20 H 0.137 0.863 21 C -0.146 4.146 22 C -0.118 4.118 23 H 0.117 0.883 24 C -0.117 4.117 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -5.839 18.320 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.240 6.240 17 C 0.334 3.666 18 O -0.397 6.397 19 C -0.187 4.187 20 H 0.155 0.845 21 C -0.183 4.183 22 C -0.137 4.137 23 H 0.135 0.865 24 C -0.173 4.173 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.423 -5.448 18.121 19.433 hybrid contribution 0.877 -0.258 -0.601 1.095 sum -3.546 -5.706 17.520 18.764 Atomic orbital electron populations 1.22232 0.96536 1.01682 1.02412 1.21507 0.93754 0.83965 1.03003 1.48210 1.63851 1.13391 1.07136 1.19330 0.96462 0.93713 0.77565 1.21432 0.96875 1.32067 1.06389 0.92389 1.24932 0.97931 0.94830 0.96359 1.69930 1.35747 1.33298 1.14330 0.86482 0.84577 0.77688 0.78599 1.20621 1.21045 1.19871 1.19722 0.79720 0.87159 0.84315 1.90716 1.44442 1.17542 1.86739 1.22960 1.02631 0.92637 0.84473 1.86558 1.78228 1.44978 1.14270 1.22656 0.73975 0.85994 0.83972 1.90651 1.42694 1.19929 1.86452 1.21806 1.07971 1.00550 0.88368 0.84512 1.23178 0.90612 1.03952 1.00574 1.22526 0.98604 0.99148 0.93382 0.86474 1.21435 1.02539 0.92685 1.00686 0.91901 0.93149 0.91777 0.89419 0.91779 0.94636 0.93710 0.92664 0.88758 0.88782 0.87133 0.87933 0.91684 0.92841 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.51 2.46 -175.05 -0.43 -12.94 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.88 7.75 -10.98 -0.09 10.80 16 14 O -0.52 -13.58 16.08 -14.10 -0.23 -13.80 16 15 C 0.05 0.84 4.50 36.01 0.16 1.00 16 16 O -0.33 -5.60 9.75 -45.88 -0.45 -6.04 16 17 C 0.49 7.04 7.72 36.01 0.28 7.32 16 18 O -0.51 -7.68 12.86 -18.75 -0.24 -7.92 16 19 C -0.17 -1.81 6.30 -91.77 -0.58 -2.39 16 20 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 21 C -0.15 -1.27 9.88 -26.73 -0.26 -1.53 16 22 C -0.12 -1.02 6.41 -90.61 -0.58 -1.60 16 23 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.12 -1.11 8.43 37.16 0.31 -0.79 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.42 7.39 -51.93 -0.38 1.03 16 34 H 0.09 1.36 7.18 -51.93 -0.37 0.99 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.06 0.70 7.02 -51.93 -0.36 0.34 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -33.84 331.57 -7.41 -41.25 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.93 Total: -1.91 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.85 Total: 5.29 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.31 Total: -38.69 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.92 Total: -27.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.84 -7.41 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918866274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.919 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds