Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47101 * 2 1 4 4 C 1.46503 * 119.99640 * 270.00209 * 3 2 1 5 5 C 1.50704 * 109.46737 * 269.99433 * 4 3 2 6 6 H 1.07990 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99342 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00610 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99557 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46980 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46909 * 209.99851 * 9 7 5 12 12 H 1.48496 * 109.47165 * 330.00197 * 9 7 5 13 13 C 1.34772 * 120.00233 * 89.99509 * 3 2 1 14 14 O 1.21277 * 120.00379 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00096 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47386 * 179.97438 * 15 13 3 17 17 C 1.34222 * 116.99913 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00567 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99780 * 179.97438 * 17 16 15 20 20 H 1.09004 * 115.55360 * 34.33038 * 19 17 16 21 21 C 1.52999 * 117.51964 * 248.62470 * 19 17 16 22 22 C 1.53001 * 60.00190 * 252.51996 * 21 19 17 23 23 H 1.09002 * 117.49822 * 252.51020 * 22 21 19 24 24 C 1.53003 * 117.51964 * 107.47982 * 22 21 19 25 25 H 1.09002 * 109.46685 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47263 * 299.99693 * 1 2 3 27 27 H 1.08993 * 109.46949 * 60.00381 * 1 2 3 28 28 H 1.08997 * 109.47304 * 239.99757 * 2 1 3 29 29 H 1.09006 * 109.47248 * 119.99637 * 2 1 3 30 30 H 1.09000 * 109.47408 * 29.99812 * 4 3 2 31 31 H 1.09002 * 109.46840 * 149.99991 * 4 3 2 32 32 H 0.97000 * 119.99880 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46859 * 59.99490 * 15 13 3 34 34 H 1.09003 * 109.46960 * 299.99751 * 15 13 3 35 35 H 1.09001 * 117.50150 * 145.03255 * 21 19 17 36 36 H 1.08995 * 117.49529 * 0.02562 * 21 19 17 37 37 H 1.09005 * 109.46643 * 351.28298 * 24 22 21 38 38 H 1.08996 * 109.47432 * 111.28196 * 24 22 21 39 39 H 1.09000 * 109.47232 * 231.28796 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9134 2.0965 -3.4170 10 1 5.9761 0.8759 -4.2606 11 1 6.3928 3.2641 -4.1994 12 1 6.7735 1.9156 -2.2201 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 8 2.3071 2.1956 3.5760 17 6 2.1370 1.7116 4.8163 18 8 1.7378 0.5822 4.9747 19 6 2.4440 2.5768 6.0114 20 1 2.2312 3.6389 5.8900 21 6 3.6487 2.1915 6.8722 22 6 2.2296 1.9675 7.3984 23 1 1.8759 2.6287 8.1894 24 6 1.7200 0.5264 7.4659 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 3.6757 3.5177 -4.4431 33 1 2.6227 0.4189 2.5299 34 1 0.9443 1.0116 2.5302 35 1 4.2286 3.0002 7.3171 36 1 4.2198 1.3124 6.5740 37 1 2.4294 -0.1336 6.9664 38 1 1.6164 0.2261 8.5085 39 1 0.7513 0.4600 6.9706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918866274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -116.224458 kcal Electronic energy + Delta-G solvation = -20686.523201 eV Core-core repulsion = 17401.635077 eV Total energy + Delta-G solvation = -3284.888123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.92258 -40.69573 -38.64896 -37.16816 -36.88366 -34.95274 -31.78301 -30.86807 -29.62224 -28.46120 -25.85606 -24.74752 -24.06974 -22.24931 -21.16444 -20.22360 -18.99654 -18.66556 -17.96286 -17.76667 -17.47654 -16.80622 -16.28977 -16.15887 -15.67170 -14.89474 -14.74888 -14.55838 -14.23843 -14.00945 -13.84056 -13.60644 -13.50494 -13.29958 -13.22404 -13.06748 -12.69319 -12.51986 -12.42527 -12.23863 -12.06786 -11.80542 -11.73119 -11.41659 -11.27631 -10.99780 -10.73051 -10.65352 -9.56845 -8.24425 -6.39224 0.98639 1.24210 1.36450 1.39539 1.49701 1.59389 2.30521 2.43418 2.72832 3.05614 3.40655 3.53598 3.64312 3.81858 3.90363 3.95031 4.10927 4.13512 4.36003 4.43888 4.56768 4.75961 4.85170 4.86460 4.92517 4.95731 5.00513 5.01113 5.14237 5.17532 5.25919 5.34158 5.52163 5.54956 5.78112 6.02653 6.53587 6.66735 6.69934 7.19242 7.34915 8.83100 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.004087 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.696175 B = 6849.579240 C = 7467.392456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.498 3.502 14 O -0.579 6.579 15 C 0.063 3.937 16 O -0.351 6.351 17 C 0.487 3.513 18 O -0.519 6.519 19 C -0.191 4.191 20 H 0.147 0.853 21 C -0.137 4.137 22 C -0.105 4.105 23 H 0.147 0.853 24 C -0.117 4.117 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.030 0.970 31 H -0.001 1.001 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -7.337 20.161 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.013 4.013 16 O -0.267 6.267 17 C 0.332 3.668 18 O -0.408 6.408 19 C -0.210 4.210 20 H 0.165 0.835 21 C -0.174 4.174 22 C -0.123 4.123 23 H 0.165 0.835 24 C -0.174 4.174 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.996 -7.007 19.979 21.546 hybrid contribution 0.686 0.179 -1.134 1.337 sum -3.310 -6.828 18.845 20.315 Atomic orbital electron populations 1.22173 0.94292 1.03810 1.01817 1.21868 0.95585 0.80957 1.04384 1.48212 1.63556 1.15255 1.05669 1.18793 0.95621 0.91637 0.79737 1.21706 0.97830 1.32291 1.06728 0.92770 1.25855 1.02472 0.94345 0.96363 1.70046 1.37831 1.33994 1.14789 0.85397 0.78849 0.78257 0.78194 1.18699 1.20573 1.19849 1.20574 0.78333 0.86653 0.85899 1.90675 1.47153 1.20247 1.87774 1.22790 1.04546 0.91996 0.81998 1.86570 1.78888 1.45842 1.15365 1.23371 0.73377 0.86411 0.83662 1.90640 1.43279 1.20535 1.86356 1.22007 1.10542 1.00681 0.87776 0.83504 1.23335 0.90549 1.04342 0.99180 1.22708 0.98340 0.98841 0.92366 0.83542 1.21417 1.01160 0.93142 1.01691 0.88327 0.92506 0.93651 0.89929 0.88488 0.95206 0.98292 0.92312 0.86673 0.86161 0.84628 0.88703 0.93406 0.90612 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.86 5.93 86.38 0.51 3.37 16 3 N -0.59 -25.56 2.46 -826.12 -2.03 -27.59 16 4 C 0.26 14.27 5.16 85.63 0.44 14.72 16 5 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 6 H 0.05 3.11 7.81 -2.92 -0.02 3.08 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.50 21.83 7.75 87.66 0.68 22.51 16 14 O -0.58 -31.71 16.08 15.78 0.25 -31.46 16 15 C 0.06 2.05 4.50 71.24 0.32 2.37 16 16 O -0.35 -11.97 9.75 -44.98 -0.44 -12.40 16 17 C 0.49 13.53 7.72 71.24 0.55 14.08 16 18 O -0.52 -15.01 12.86 21.96 0.28 -14.73 16 19 C -0.19 -3.81 6.30 -11.54 -0.07 -3.88 16 20 H 0.15 2.58 8.14 -2.38 -0.02 2.56 16 21 C -0.14 -2.05 9.88 30.59 0.30 -1.75 16 22 C -0.10 -1.52 6.41 -10.79 -0.07 -1.59 16 23 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 24 C -0.12 -1.99 8.43 71.98 0.61 -1.39 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 29 H 0.10 2.33 6.44 -2.38 -0.02 2.31 16 30 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 31 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.12 3.22 7.39 -2.39 -0.02 3.21 16 34 H 0.12 3.23 7.18 -2.39 -0.02 3.21 16 35 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 37 H 0.05 0.97 7.02 -2.38 -0.02 0.95 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.08 7.27 -2.39 -0.02 1.06 16 Total: -1.00 -76.78 331.57 6.12 -70.66 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.03 Total: 9.74 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 4.71 Total: 14.61 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.74 Total: -83.47 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: 0.10 Total: -58.60 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -76.78 6.12 -70.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918866274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.566 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds