Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47393 * 240.00384 * 3 2 1 5 5 H 1.48508 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 120.00073 * 3 2 1 7 7 C 1.37872 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00015 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00203 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99549 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00434 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00270 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47194 * 155.00206 * 14 13 11 16 16 C 1.52997 * 109.47441 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47000 * 299.99819 * 16 15 14 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 15 19 19 N 1.34777 * 119.99675 * 180.27843 * 18 17 16 20 20 O 1.21283 * 119.99803 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.46876 * 59.99835 * 17 16 15 22 22 C 1.52996 * 109.46959 * 274.99991 * 14 13 11 23 23 H 0.97006 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47419 * 60.00447 * 9 7 2 25 25 H 1.09000 * 109.47205 * 299.99811 * 9 7 2 26 26 H 0.97007 * 119.99816 * 359.97438 * 10 9 7 27 27 H 0.97007 * 119.99585 * 359.97438 * 13 11 10 28 28 H 1.08998 * 109.47023 * 35.00181 * 14 13 11 29 29 H 1.09001 * 109.47857 * 59.99462 * 15 14 13 30 30 H 1.09004 * 109.47239 * 299.99932 * 15 14 13 31 31 H 1.09000 * 109.47849 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47443 * 59.99604 * 16 15 14 33 33 H 1.08998 * 109.46846 * 300.00150 * 17 16 15 34 34 H 0.97004 * 119.99652 * 179.72868 * 19 18 17 35 35 H 0.97000 * 119.99894 * 359.71837 * 19 18 17 36 36 H 1.09006 * 109.47458 * 59.99925 * 21 17 16 37 37 H 1.09004 * 109.47239 * 180.02562 * 21 17 16 38 38 H 1.09006 * 109.47262 * 299.99674 * 22 14 13 39 39 H 1.08994 * 109.47190 * 60.00266 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0020 13 7 2.6294 -5.9077 -0.0016 14 6 2.1411 -7.2889 -0.0027 15 6 3.2038 -8.2051 -0.6127 16 6 2.6936 -9.6475 -0.6145 17 6 2.4043 -10.0879 0.8220 18 6 1.9011 -11.5084 0.8202 19 7 1.5745 -12.1090 1.9817 20 8 1.7849 -12.1093 -0.2269 21 6 1.3415 -9.1717 1.4319 22 6 1.8522 -7.7289 1.4339 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0009 27 1 3.5832 -5.7305 -0.0020 28 1 1.2265 -7.3504 -0.5925 29 1 4.1185 -8.1436 -0.0231 30 1 3.4097 -7.8917 -1.6362 31 1 3.4505 -10.3002 -1.0494 32 1 1.7792 -9.7088 -1.2044 33 1 3.3188 -10.0267 1.4119 34 1 1.2469 -13.0221 1.9802 35 1 1.6671 -11.6283 2.8191 36 1 0.4270 -9.2329 0.8419 37 1 1.1357 -9.4851 2.4554 38 1 2.7669 -7.6674 2.0236 39 1 1.0951 -7.0762 1.8684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320942686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -99.680580 kcal Electronic energy + Delta-G solvation = -20362.194080 eV Core-core repulsion = 17110.316105 eV Total energy + Delta-G solvation = -3251.877976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41282 -39.28411 -37.52413 -34.30601 -34.01910 -33.54238 -32.25096 -30.89783 -29.60023 -26.92510 -23.88801 -22.87884 -22.38135 -20.74532 -20.18989 -19.80307 -17.99894 -17.77102 -16.85240 -16.37133 -15.80678 -15.38223 -14.78349 -14.74109 -14.52897 -14.13190 -13.96077 -13.59069 -13.19813 -12.95664 -12.63503 -12.38174 -11.94315 -11.81507 -11.65613 -11.38781 -11.29876 -10.95923 -10.87364 -10.63648 -10.38535 -10.28206 -10.04736 -9.98365 -9.36811 -9.34248 -8.73744 -8.64405 -7.73104 -6.13609 -4.20175 2.37517 3.21650 3.26699 3.30788 3.32428 3.42778 3.97745 4.33812 4.40138 4.51063 4.54392 4.91702 5.01899 5.06389 5.14673 5.22312 5.24339 5.29458 5.34349 5.55107 5.67155 5.85950 5.90400 6.00367 6.01953 6.23634 6.32021 6.46504 6.95247 7.01130 7.16383 7.54631 7.58091 7.59812 7.94216 7.97978 8.07515 8.78852 8.98434 9.36831 9.51236 10.96623 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057589 B = 0.002942 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.090830 B = 9513.843053 C = 9674.379180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.754 5.754 14 C 0.164 3.836 15 C -0.126 4.126 16 C -0.095 4.095 17 C -0.109 4.109 18 C 0.522 3.478 19 N -0.858 5.858 20 O -0.544 6.544 21 C -0.106 4.106 22 C -0.129 4.129 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.386 0.614 27 H 0.390 0.610 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -20.674 5.038 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.410 5.410 14 C 0.058 3.942 15 C -0.164 4.164 16 C -0.133 4.133 17 C -0.131 4.131 18 C 0.307 3.693 19 N -0.421 5.421 20 O -0.420 6.420 21 C -0.145 4.145 22 C -0.168 4.168 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.223 0.777 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.230 0.770 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.938 -20.906 4.252 22.434 hybrid contribution 1.229 0.951 0.573 1.656 sum 8.168 -19.955 4.824 22.095 Atomic orbital electron populations 1.69970 1.06089 1.27354 1.48911 1.24943 0.94911 0.99380 0.94799 0.86476 0.79399 0.82369 0.78639 1.20097 1.21090 1.20117 1.21196 0.93215 0.90496 1.53153 0.92033 1.18955 0.87781 0.81083 0.97540 1.45727 1.10723 1.04503 1.77301 1.16182 0.85288 0.81076 0.78248 1.90867 1.14246 1.84219 1.58683 1.45238 1.08678 1.04959 1.82125 1.20691 0.97819 0.79803 0.95860 1.21833 0.98354 0.94375 1.01835 1.21288 1.02697 0.95147 0.94208 1.21428 1.00523 0.91013 1.00094 1.20774 0.76253 0.88891 0.83404 1.43929 1.70014 1.18762 1.09401 1.90745 1.53237 1.66597 1.31445 1.21512 0.97827 0.94491 1.00643 1.21968 1.01893 0.95161 0.97755 0.92419 0.95799 0.95818 0.78231 0.77706 0.89513 0.91433 0.90774 0.90858 0.90737 0.88319 0.77039 0.76992 0.90933 0.91427 0.91770 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.60 5.55 -66.41 -0.37 -15.97 16 11 C 0.69 14.14 8.53 -86.93 -0.74 13.39 16 12 O -0.60 -14.90 16.01 5.28 0.08 -14.81 16 13 N -0.75 -10.86 5.08 -58.68 -0.30 -11.16 16 14 C 0.16 2.04 2.45 -67.93 -0.17 1.88 16 15 C -0.13 -1.16 5.39 -26.73 -0.14 -1.30 16 16 C -0.09 -0.89 4.49 -26.73 -0.12 -1.01 16 17 C -0.11 -0.87 2.53 -91.77 -0.23 -1.10 16 18 C 0.52 4.88 7.43 -10.98 -0.08 4.80 16 19 N -0.86 -4.79 8.76 31.22 0.27 -4.52 16 20 O -0.54 -7.46 16.82 5.55 0.09 -7.37 16 21 C -0.11 -0.91 5.10 -26.70 -0.14 -1.05 16 22 C -0.13 -1.41 5.50 -26.70 -0.15 -1.56 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 27 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 28 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 1.91 8.93 -40.82 -0.36 1.54 16 35 H 0.40 1.18 8.24 -40.82 -0.34 0.84 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.44 7.55 -51.93 -0.39 0.04 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -35.63 324.44 -7.76 -43.39 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.94 Total: 7.44 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.21 Total: 7.77 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.34 Total: -57.18 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.18 Total: -22.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.63 -7.76 -43.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320942686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.293 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds