Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47393 * 240.00384 * 3 2 1 5 5 H 1.48508 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 120.00073 * 3 2 1 7 7 C 1.37872 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00015 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00203 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99549 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00434 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00270 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47194 * 155.00206 * 14 13 11 16 16 C 1.52997 * 109.47441 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47000 * 299.99819 * 16 15 14 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 15 19 19 N 1.34777 * 119.99675 * 180.27843 * 18 17 16 20 20 O 1.21283 * 119.99803 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.46876 * 59.99835 * 17 16 15 22 22 C 1.52996 * 109.46959 * 274.99991 * 14 13 11 23 23 H 0.97006 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47419 * 60.00447 * 9 7 2 25 25 H 1.09000 * 109.47205 * 299.99811 * 9 7 2 26 26 H 0.97007 * 119.99816 * 359.97438 * 10 9 7 27 27 H 0.97007 * 119.99585 * 359.97438 * 13 11 10 28 28 H 1.08998 * 109.47023 * 35.00181 * 14 13 11 29 29 H 1.09001 * 109.47857 * 59.99462 * 15 14 13 30 30 H 1.09004 * 109.47239 * 299.99932 * 15 14 13 31 31 H 1.09000 * 109.47849 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47443 * 59.99604 * 16 15 14 33 33 H 1.08998 * 109.46846 * 300.00150 * 17 16 15 34 34 H 0.97004 * 119.99652 * 179.72868 * 19 18 17 35 35 H 0.97000 * 119.99894 * 359.71837 * 19 18 17 36 36 H 1.09006 * 109.47458 * 59.99925 * 21 17 16 37 37 H 1.09004 * 109.47239 * 180.02562 * 21 17 16 38 38 H 1.09006 * 109.47262 * 299.99674 * 22 14 13 39 39 H 1.08994 * 109.47190 * 60.00266 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0020 13 7 2.6294 -5.9077 -0.0016 14 6 2.1411 -7.2889 -0.0027 15 6 3.2038 -8.2051 -0.6127 16 6 2.6936 -9.6475 -0.6145 17 6 2.4043 -10.0879 0.8220 18 6 1.9011 -11.5084 0.8202 19 7 1.5745 -12.1090 1.9817 20 8 1.7849 -12.1093 -0.2269 21 6 1.3415 -9.1717 1.4319 22 6 1.8522 -7.7289 1.4339 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4354 -0.0009 27 1 3.5832 -5.7305 -0.0020 28 1 1.2265 -7.3504 -0.5925 29 1 4.1185 -8.1436 -0.0231 30 1 3.4097 -7.8917 -1.6362 31 1 3.4505 -10.3002 -1.0494 32 1 1.7792 -9.7088 -1.2044 33 1 3.3188 -10.0267 1.4119 34 1 1.2469 -13.0221 1.9802 35 1 1.6671 -11.6283 2.8191 36 1 0.4270 -9.2329 0.8419 37 1 1.1357 -9.4851 2.4554 38 1 2.7669 -7.6674 2.0236 39 1 1.0951 -7.0762 1.8684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320942686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -129.956774 kcal Electronic energy + Delta-G solvation = -20363.506955 eV Core-core repulsion = 17110.316105 eV Total energy + Delta-G solvation = -3253.190850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35318 -40.63902 -38.60509 -36.10530 -35.19590 -34.56101 -34.18210 -31.69369 -30.76614 -28.83795 -25.19364 -24.04109 -23.68992 -21.84211 -21.54338 -20.72242 -19.63998 -18.41663 -18.02117 -17.54043 -17.48322 -16.55856 -16.47134 -16.05872 -15.59944 -15.24791 -15.08387 -14.97553 -14.47613 -14.07991 -13.99425 -13.93461 -13.39387 -13.16205 -12.91380 -12.66625 -12.54599 -12.25681 -12.20771 -12.09411 -11.49230 -11.46377 -11.28463 -11.17754 -10.81230 -10.77308 -10.60355 -10.16444 -9.53782 -8.26664 -6.43242 1.44499 1.49085 1.57037 1.66277 1.93265 2.30202 2.41223 2.66328 3.08205 3.55670 3.66755 3.71058 3.93647 4.09126 4.21504 4.37668 4.40541 4.50851 4.53146 4.74486 4.88534 5.00625 5.10963 5.12491 5.20051 5.22623 5.29239 5.36940 5.42191 5.52021 5.67641 5.74048 5.87682 5.94276 6.33856 6.49939 6.68915 7.26530 7.38619 7.39005 7.79232 8.85562 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057589 B = 0.002942 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.090830 B = 9513.843053 C = 9674.379180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.690 3.310 12 O -0.650 6.650 13 N -0.727 5.727 14 C 0.158 3.842 15 C -0.111 4.111 16 C -0.094 4.094 17 C -0.101 4.101 18 C 0.519 3.481 19 N -0.838 5.838 20 O -0.595 6.595 21 C -0.099 4.099 22 C -0.123 4.123 23 H 0.269 0.731 24 H -0.018 1.018 25 H -0.015 1.015 26 H 0.405 0.595 27 H 0.411 0.589 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.405 0.595 35 H 0.418 0.582 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 -21.000 6.324 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.378 5.378 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.384 5.384 14 C 0.052 3.948 15 C -0.149 4.149 16 C -0.133 4.133 17 C -0.122 4.122 18 C 0.304 3.696 19 N -0.402 5.402 20 O -0.476 6.476 21 C -0.138 4.138 22 C -0.161 4.161 23 H 0.077 0.923 24 H 0.000 1.000 25 H 0.002 0.998 26 H 0.240 0.760 27 H 0.248 0.752 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.237 0.763 35 H 0.249 0.751 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.284 -21.289 5.589 24.294 hybrid contribution 0.162 0.945 0.194 0.978 sum 10.445 -20.344 5.783 23.589 Atomic orbital electron populations 1.70144 1.08317 1.28609 1.49982 1.26079 0.95777 1.03920 0.93896 0.85188 0.77871 0.76508 0.79508 1.18688 1.21174 1.18544 1.21583 0.94329 0.90477 1.52881 0.89756 1.18369 0.88120 0.83444 0.93772 1.45298 1.10832 1.03872 1.77799 1.16370 0.85233 0.81649 0.77795 1.90837 1.16888 1.84941 1.60644 1.45002 1.08943 1.04358 1.80049 1.20917 0.97736 0.79078 0.97028 1.21740 0.98085 0.93056 1.02051 1.21248 1.01705 0.95238 0.95089 1.21391 1.01474 0.89824 0.99476 1.20986 0.75855 0.89254 0.83465 1.43785 1.68203 1.19036 1.09128 1.90732 1.55645 1.67793 1.33386 1.21451 0.97033 0.93200 1.02089 1.21882 1.02122 0.95769 0.96375 0.92265 0.99973 0.99752 0.75995 0.75243 0.93255 0.88167 0.90889 0.90243 0.93366 0.84847 0.76344 0.75087 0.93288 0.88486 0.88896 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.29 29.54 68.60 2.03 44.31 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.55 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.05 5.43 85.63 0.46 16.51 16 10 N -0.72 -31.28 5.55 -482.29 -2.68 -33.96 16 11 C 0.69 28.77 8.53 179.06 1.53 30.30 16 12 O -0.65 -34.03 16.01 -4.01 -0.06 -34.10 16 13 N -0.73 -20.24 5.08 -457.83 -2.33 -22.57 16 14 C 0.16 3.83 2.45 44.99 0.11 3.94 16 15 C -0.11 -1.80 5.39 30.59 0.16 -1.63 16 16 C -0.09 -1.63 4.49 30.59 0.14 -1.49 16 17 C -0.10 -1.35 2.53 -11.54 -0.03 -1.38 16 18 C 0.52 8.81 7.43 87.66 0.65 9.47 16 19 N -0.84 -7.28 8.76 -173.53 -1.52 -8.80 16 20 O -0.59 -16.13 16.82 -3.04 -0.05 -16.18 16 21 C -0.10 -1.54 5.10 30.61 0.16 -1.39 16 22 C -0.12 -2.52 5.50 30.61 0.17 -2.35 16 23 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 24 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 26 H 0.40 14.19 8.34 -92.70 -0.77 13.41 16 27 H 0.41 8.21 8.62 -92.70 -0.80 7.41 16 28 H 0.05 1.59 7.58 -2.39 -0.02 1.57 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 32 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 33 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.41 3.04 8.93 -92.71 -0.83 2.21 16 35 H 0.42 1.00 8.24 -92.71 -0.76 0.23 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.10 0.95 7.55 -2.38 -0.02 0.94 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -82.89 324.44 -2.34 -85.23 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -2.07 Total: 20.03 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 4.05 Total: 22.48 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.24 Total: -121.78 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.12 Total: -50.28 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -82.89 -2.34 -85.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320942686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.722 kcal (2) G-P(sol) polarization free energy of solvation -82.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds